{"id":"https://openalex.org/W4392662550","doi":"https://doi.org/10.3390/a17030116","title":"Progressive Multiple Alignment of Graphs","display_name":"Progressive Multiple Alignment of Graphs","publication_year":2024,"publication_date":"2024-03-11","ids":{"openalex":"https://openalex.org/W4392662550","doi":"https://doi.org/10.3390/a17030116"},"language":"en","primary_location":{"id":"doi:10.3390/a17030116","is_oa":true,"landing_page_url":"https://doi.org/10.3390/a17030116","pdf_url":"https://www.mdpi.com/1999-4893/17/3/116/pdf?version=1710159261","source":{"id":"https://openalex.org/S190629608","display_name":"Algorithms","issn_l":"1999-4893","issn":["1999-4893"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/1999-4893/17/3/116/pdf?version=1710159261","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057152287","display_name":"Marcos E. Gonz\u00e1lez Laffitte","orcid":"https://orcid.org/0009-0008-2307-595X"},"institutions":[{"id":"https://openalex.org/I4401726909","display_name":"Center for Scalable Data Analytics and Artificial Intelligence","ror":"https://ror.org/01t4ttr56","country_code":"DE","type":"education","lineage":["https://openalex.org/I4401726909","https://openalex.org/I78650965","https://openalex.org/I926574661"]},{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Marcos E. Gonz\u00e1lez Laffitte","raw_affiliation_strings":["Bioinformatics Group, Department of Computer Science, Interdisciplinary Center for Bioinformatics, Leipzig University, H\u00e4rtelstra\u00dfe 16-18, D-04107 Leipzig, Germany","Center for Scalable Data Analytics and Artificial Intelligence (ScaDS.AI), Leipzig University, D-04103 Leipzig, Germany"],"raw_orcid":"https://orcid.org/0009-0008-2307-595X","affiliations":[{"raw_affiliation_string":"Bioinformatics Group, Department of Computer Science, Interdisciplinary Center for Bioinformatics, Leipzig University, H\u00e4rtelstra\u00dfe 16-18, D-04107 Leipzig, Germany","institution_ids":["https://openalex.org/I926574661"]},{"raw_affiliation_string":"Center for Scalable Data Analytics and Artificial Intelligence (ScaDS.AI), Leipzig University, D-04103 Leipzig, Germany","institution_ids":["https://openalex.org/I926574661","https://openalex.org/I4401726909"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016104736","display_name":"Peter F. Stadler","orcid":"https://orcid.org/0000-0002-5016-5191"},"institutions":[{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]},{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]},{"id":"https://openalex.org/I1308548392","display_name":"Santa Fe Institute","ror":"https://ror.org/01arysc35","country_code":"US","type":"funder","lineage":["https://openalex.org/I1308548392"]},{"id":"https://openalex.org/I36243813","display_name":"Universidad Nacional de Colombia","ror":"https://ror.org/059yx9a68","country_code":"CO","type":"education","lineage":["https://openalex.org/I36243813"]},{"id":"https://openalex.org/I4210091327","display_name":"Max Planck Institute for Mathematics in the Sciences","ror":"https://ror.org/00ez2he07","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210091327"]},{"id":"https://openalex.org/I4401726909","display_name":"Center for Scalable Data Analytics and Artificial Intelligence","ror":"https://ror.org/01t4ttr56","country_code":"DE","type":"education","lineage":["https://openalex.org/I4401726909","https://openalex.org/I78650965","https://openalex.org/I926574661"]},{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["AT","CO","DE","DK","US"],"is_corresponding":true,"raw_author_name":"Peter F. Stadler","raw_affiliation_strings":["Bioinformatics Group, Department of Computer Science, Interdisciplinary Center for Bioinformatics, Leipzig University, H\u00e4rtelstra\u00dfe 16-18, D-04107 Leipzig, Germany","Center for Non-Coding RNA in Technology and Health, University of Copenhagen, DK-1870 Fredriksberg, Denmark","Center for Scalable Data Analytics and Artificial Intelligence (ScaDS.AI), Leipzig University, D-04103 Leipzig, Germany","Department of Theoretical Chemistry, University of Vienna, W\u00e4hringerstra\u00dfe 17, A-1090 Vienna, Austria","Facultad de Ciencias, Universidad National de Colombia, Sede Bogot\u00e1, Bogot\u00e1 CO-111321, Colombia","Max Planck Institute for Mathematics in the Sciences, Inselstra\u00dfe 22, D-04103 Leipzig, Germany","Santa Fe Institute, 1399 Hyde Park Rd., Santa Fe, NM 87501, USA"],"raw_orcid":"https://orcid.org/0000-0002-5016-5191","affiliations":[{"raw_affiliation_string":"Bioinformatics Group, Department of Computer Science, Interdisciplinary Center for Bioinformatics, Leipzig University, H\u00e4rtelstra\u00dfe 16-18, D-04107 Leipzig, Germany","institution_ids":["https://openalex.org/I926574661"]},{"raw_affiliation_string":"Center for Non-Coding RNA in Technology and Health, University of Copenhagen, DK-1870 Fredriksberg, Denmark","institution_ids":["https://openalex.org/I124055696"]},{"raw_affiliation_string":"Center for Scalable Data Analytics and Artificial Intelligence (ScaDS.AI), Leipzig University, D-04103 Leipzig, Germany","institution_ids":["https://openalex.org/I926574661","https://openalex.org/I4401726909"]},{"raw_affiliation_string":"Department of Theoretical Chemistry, University of Vienna, W\u00e4hringerstra\u00dfe 17, A-1090 Vienna, Austria","institution_ids":["https://openalex.org/I129774422"]},{"raw_affiliation_string":"Facultad de Ciencias, Universidad National de Colombia, Sede Bogot\u00e1, Bogot\u00e1 CO-111321, Colombia","institution_ids":["https://openalex.org/I36243813"]},{"raw_affiliation_string":"Max Planck Institute for Mathematics in the Sciences, Inselstra\u00dfe 22, D-04103 Leipzig, Germany","institution_ids":["https://openalex.org/I4210091327"]},{"raw_affiliation_string":"Santa Fe Institute, 1399 Hyde Park Rd., Santa Fe, NM 87501, USA","institution_ids":["https://openalex.org/I1308548392"]}]}],"institutions":[],"countries_distinct_count":5,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5016104736","https://openalex.org/A5057152287"],"corresponding_institution_ids":["https://openalex.org/I124055696","https://openalex.org/I129774422","https://openalex.org/I1308548392","https://openalex.org/I36243813","https://openalex.org/I4210091327","https://openalex.org/I4401726909","https://openalex.org/I926574661"],"apc_list":{"value":1400,"currency":"CHF","value_usd":1515},"apc_paid":{"value":1400,"currency":"CHF","value_usd":1515},"fwci":0.4087,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.55730986,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":95},"biblio":{"volume":"17","issue":"3","first_page":"116","last_page":"116"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12292","display_name":"Graph Theory and Algorithms","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12292","display_name":"Graph Theory and Algorithms","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9872000217437744,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10627","display_name":"Advanced Image and Video Retrieval Techniques","score":0.9793999791145325,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5047858953475952},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.36220836639404297},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.359684556722641},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3529236316680908}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5047858953475952},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.36220836639404297},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.359684556722641},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3529236316680908}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.3390/a17030116","is_oa":true,"landing_page_url":"https://doi.org/10.3390/a17030116","pdf_url":"https://www.mdpi.com/1999-4893/17/3/116/pdf?version=1710159261","source":{"id":"https://openalex.org/S190629608","display_name":"Algorithms","issn_l":"1999-4893","issn":["1999-4893"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:3ff91830126b40098ae2e7f3b081c9e4","is_oa":false,"landing_page_url":"https://doaj.org/article/3ff91830126b40098ae2e7f3b081c9e4","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms, Vol 17, Iss 3, p 116 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3390/a17030116","is_oa":true,"landing_page_url":"https://doi.org/10.3390/a17030116","pdf_url":"https://www.mdpi.com/1999-4893/17/3/116/pdf?version=1710159261","source":{"id":"https://openalex.org/S190629608","display_name":"Algorithms","issn_l":"1999-4893","issn":["1999-4893"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6098565189","display_name":null,"funder_award_id":"57616814","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"}],"funders":[{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4392662550.pdf"},"referenced_works_count":49,"referenced_works":["https://openalex.org/W1543459401","https://openalex.org/W1605991832","https://openalex.org/W1888761835","https://openalex.org/W1969153299","https://openalex.org/W1984220047","https://openalex.org/W2002638840","https://openalex.org/W2011301426","https://openalex.org/W2017822917","https://openalex.org/W2020128083","https://openalex.org/W2022772986","https://openalex.org/W2023119578","https://openalex.org/W2032338144","https://openalex.org/W2053663417","https://openalex.org/W2053841470","https://openalex.org/W2056124433","https://openalex.org/W2068379792","https://openalex.org/W2073585984","https://openalex.org/W2095581275","https://openalex.org/W2103465619","https://openalex.org/W2128356721","https://openalex.org/W2130237248","https://openalex.org/W2131260462","https://openalex.org/W2132022337","https://openalex.org/W2134941776","https://openalex.org/W2147405597","https://openalex.org/W2147996827","https://openalex.org/W2155159930","https://openalex.org/W2229908198","https://openalex.org/W2258865027","https://openalex.org/W2601638040","https://openalex.org/W2604114816","https://openalex.org/W2736007020","https://openalex.org/W2795196889","https://openalex.org/W2807756691","https://openalex.org/W2925177113","https://openalex.org/W2952286916","https://openalex.org/W3103523530","https://openalex.org/W3117892846","https://openalex.org/W3120649834","https://openalex.org/W3169215935","https://openalex.org/W3193453955","https://openalex.org/W4212877087","https://openalex.org/W4230748645","https://openalex.org/W4255049408","https://openalex.org/W4301775964","https://openalex.org/W4382239695","https://openalex.org/W4385284171","https://openalex.org/W6632502718","https://openalex.org/W6689475862"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W1979597421","https://openalex.org/W2007980826","https://openalex.org/W2061531152","https://openalex.org/W3002753104","https://openalex.org/W2077600819","https://openalex.org/W2142036596","https://openalex.org/W2072657027","https://openalex.org/W2600246793","https://openalex.org/W4238204885"],"abstract_inverted_index":{"The":[0,148,182,244],"comparison":[1],"of":[2,17,58,64,114,122,125,129,145,178,184,208,214,247,255],"multiple":[3,26,116,169],"(labeled)":[4],"graphs":[5,257],"with":[6,223],"unrelated":[7],"vertex":[8,44],"sets":[9,254],"is":[10,21,49,90,189,250],"an":[11,88],"important":[12],"task":[13],"in":[14,56,233,260],"diverse":[15],"areas":[16],"applications.":[18],"Conceptually,":[19],"it":[20],"often":[22],"closely":[23],"related":[24],"to":[25,32,50,78,192,199,236,263],"sequence":[27],"alignments":[28,117,124,138,144,146,171,207,210],"since":[29],"one":[30],"aims":[31],"determine":[33],"a":[34,39,71,91,119,229],"correspondence,":[35],"or":[36],"more":[37],"precisely,":[38],"multipartite":[40],"matching":[41,152],"between":[42,220],"the":[43,47,85,95,112,123,130,185,200,212],"sets.":[45],"There,":[46],"goal":[48],"match":[51],"vertices":[52],"that":[53,74,87,137,142,167,217,258],"are":[54,109],"similar":[55],"terms":[57],"labels":[59],"and":[60,66,159],"local":[61],"neighborhoods.":[62],"Alignments":[63],"sequences":[65],"ordered":[67],"forests,":[68],"however,":[69],"have":[70,139],"second":[72],"aspect":[73],"does":[75],"not":[76,155],"seem":[77],"be":[79,100,173],"considered":[80],"for":[81,241],"graph":[82,151,170,209],"comparison,":[83],"namely":[84],"idea":[86,113],"alignment":[89,107,121,180,187,221],"superobject":[92],"from":[93,203],"which":[94],"constituent":[96],"input":[97,131],"objects":[98],"can":[99,172],"recovered":[101],"faithfully":[102],"as":[103,118,238],"well-defined":[104],"projections.":[105],"Progressive":[106],"algorithms":[108],"based":[110],"on":[111,252],"computing":[115,193],"pairwise":[120,186,206],"two":[126],"disjoint":[127],"subsets":[128],"objects.":[132],"Our":[133],"formal":[134],"framework":[135],"guarantees":[136],"compositional":[140],"properties":[141],"make":[143],"well-defined.":[147],"various":[149],"similarity-based":[150],"constructions":[153],"do":[154],"share":[156],"this":[157],"property":[158],"solve":[160],"substantially":[161],"different":[162],"optimization":[163],"problems.":[164],"We":[165,227],"demonstrate":[166],"optimal":[168],"approximated":[174],"well":[175],"by":[176],"means":[177],"progressive":[179],"schemes.":[181],"solution":[183],"problem":[188],"reduced":[190],"formally":[191],"maximal":[194],"common":[195],"induced":[196],"subgraphs.":[197],"Similar":[198],"ambiguities":[201],"arising":[202],"consecutive":[204],"indels,":[205],"require":[211],"consideration":[213],"ambiguous":[215],"edges":[216],"may":[218],"appear":[219],"columns":[222],"complementary":[224],"gap":[225],"patterns.":[226],"report":[228],"simple":[230],"reference":[231],"implementation":[232],"Python/NetworkX":[234],"intended":[235],"serve":[237],"starting":[239],"point":[240],"further":[242],"developments.":[243],"computational":[245],"feasibility":[246],"our":[248],"approach":[249],"demonstrated":[251],"test":[253],"small":[256],"mimimc":[259],"particular":[261],"applications":[262],"molecular":[264],"graphs.":[265]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
