{"id":"https://openalex.org/W4384039661","doi":"https://doi.org/10.3390/a16070330","title":"A Bioinformatics Analysis of Ovarian Cancer Data Using Machine Learning","display_name":"A Bioinformatics Analysis of Ovarian Cancer Data Using Machine Learning","publication_year":2023,"publication_date":"2023-07-11","ids":{"openalex":"https://openalex.org/W4384039661","doi":"https://doi.org/10.3390/a16070330"},"language":"en","primary_location":{"id":"doi:10.3390/a16070330","is_oa":true,"landing_page_url":"https://doi.org/10.3390/a16070330","pdf_url":"https://www.mdpi.com/1999-4893/16/7/330/pdf?version=1689068748","source":{"id":"https://openalex.org/S190629608","display_name":"Algorithms","issn_l":"1999-4893","issn":["1999-4893"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/1999-4893/16/7/330/pdf?version=1689068748","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036838307","display_name":"Vincent Schilling","orcid":"https://orcid.org/0009-0001-6992-4805"},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]},{"id":"https://openalex.org/I38517508","display_name":"Technical University of Applied Sciences Wildau","ror":"https://ror.org/00k62pe27","country_code":"DE","type":"education","lineage":["https://openalex.org/I38517508"]}],"countries":["DE","US"],"is_corresponding":true,"raw_author_name":"Vincent Schilling","raw_affiliation_strings":["Department of Biochemistry and Molecular Medicine, University of California, Davis, CA 95817, USA","Department of Engineering and Natural Sciences, Technical University of Applied Sciences Wildau, 15745 Wildau, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Medicine, University of California, Davis, CA 95817, USA","institution_ids":["https://openalex.org/I84218800"]},{"raw_affiliation_string":"Department of Engineering and Natural Sciences, Technical University of Applied Sciences Wildau, 15745 Wildau, Germany","institution_ids":["https://openalex.org/I38517508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080325906","display_name":"Peter Beyerlein","orcid":null},"institutions":[{"id":"https://openalex.org/I2800071178","display_name":"Ibero-American Institute","ror":"https://ror.org/03bc1mz40","country_code":"DE","type":"facility","lineage":["https://openalex.org/I2800071178"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Peter Beyerlein","raw_affiliation_strings":["Ibiomics UG, 14193 Berlin, Germany"],"affiliations":[{"raw_affiliation_string":"Ibiomics UG, 14193 Berlin, Germany","institution_ids":["https://openalex.org/I2800071178"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5001092701","display_name":"Jeremy Chien","orcid":"https://orcid.org/0000-0003-4744-8374"},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jeremy Chien","raw_affiliation_strings":["Department of Biochemistry and Molecular Medicine, University of California, Davis, CA 95817, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Medicine, University of California, Davis, CA 95817, USA","institution_ids":["https://openalex.org/I84218800"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5001092701","https://openalex.org/A5036838307"],"corresponding_institution_ids":["https://openalex.org/I38517508","https://openalex.org/I84218800"],"apc_list":{"value":1400,"currency":"CHF","value_usd":1515},"apc_paid":{"value":1400,"currency":"CHF","value_usd":1515},"fwci":2.7126,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.90229896,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"16","issue":"7","first_page":"330","last_page":"330"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11297","display_name":"Ferroptosis and cancer prognosis","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ovarian-cancer","display_name":"Ovarian cancer","score":0.6307675242424011},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.6290974617004395},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.4987614154815674},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.47968339920043945},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4630676805973053},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.46247589588165283},{"id":"https://openalex.org/keywords/oncology","display_name":"Oncology","score":0.4352501928806305},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.40297752618789673},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3739885687828064},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.30996692180633545},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.27345749735832214},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18817228078842163}],"concepts":[{"id":"https://openalex.org/C2780427987","wikidata":"https://www.wikidata.org/wiki/Q172341","display_name":"Ovarian cancer","level":3,"score":0.6307675242424011},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.6290974617004395},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.4987614154815674},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.47968339920043945},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4630676805973053},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.46247589588165283},{"id":"https://openalex.org/C143998085","wikidata":"https://www.wikidata.org/wiki/Q162555","display_name":"Oncology","level":1,"score":0.4352501928806305},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.40297752618789673},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3739885687828064},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.30996692180633545},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.27345749735832214},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18817228078842163},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.3390/a16070330","is_oa":true,"landing_page_url":"https://doi.org/10.3390/a16070330","pdf_url":"https://www.mdpi.com/1999-4893/16/7/330/pdf?version=1689068748","source":{"id":"https://openalex.org/S190629608","display_name":"Algorithms","issn_l":"1999-4893","issn":["1999-4893"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:7a9a0981f8d3471883871a6727997a1c","is_oa":true,"landing_page_url":"https://doaj.org/article/7a9a0981f8d3471883871a6727997a1c","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms, Vol 16, Iss 7, p 330 (2023)","raw_type":"article"},{"id":"pmh:oai:mdpi.com:/1999-4893/16/7/330/","is_oa":true,"landing_page_url":"https://dx.doi.org/10.3390/a16070330","pdf_url":null,"source":{"id":"https://openalex.org/S4306400947","display_name":"MDPI (MDPI AG)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210097602","host_organization_name":"Multidisciplinary Digital Publishing Institute (Switzerland)","host_organization_lineage":["https://openalex.org/I4210097602"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms; Volume 16; Issue 7; Pages: 330","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3390/a16070330","is_oa":true,"landing_page_url":"https://doi.org/10.3390/a16070330","pdf_url":"https://www.mdpi.com/1999-4893/16/7/330/pdf?version=1689068748","source":{"id":"https://openalex.org/S190629608","display_name":"Algorithms","issn_l":"1999-4893","issn":["1999-4893"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger","score":0.550000011920929}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4384039661.pdf"},"referenced_works_count":66,"referenced_works":["https://openalex.org/W1816896904","https://openalex.org/W1969655626","https://openalex.org/W1981233558","https://openalex.org/W1987572677","https://openalex.org/W1997261348","https://openalex.org/W2015840430","https://openalex.org/W2022767256","https://openalex.org/W2031674672","https://openalex.org/W2067082610","https://openalex.org/W2071128523","https://openalex.org/W2076135471","https://openalex.org/W2086864109","https://openalex.org/W2093680793","https://openalex.org/W2098421558","https://openalex.org/W2103017472","https://openalex.org/W2107018762","https://openalex.org/W2117058881","https://openalex.org/W2123696077","https://openalex.org/W2125445391","https://openalex.org/W2139979747","https://openalex.org/W2148143831","https://openalex.org/W2149078229","https://openalex.org/W2150593711","https://openalex.org/W2158485828","https://openalex.org/W2164786997","https://openalex.org/W2179438025","https://openalex.org/W2276370059","https://openalex.org/W2294798173","https://openalex.org/W2295598076","https://openalex.org/W2517421365","https://openalex.org/W2563554623","https://openalex.org/W2575731723","https://openalex.org/W2607129810","https://openalex.org/W2738176258","https://openalex.org/W2752993654","https://openalex.org/W2766933861","https://openalex.org/W2907120547","https://openalex.org/W2911964244","https://openalex.org/W2928665623","https://openalex.org/W2973160589","https://openalex.org/W2979305272","https://openalex.org/W2984507973","https://openalex.org/W2998931275","https://openalex.org/W3029272205","https://openalex.org/W3031571693","https://openalex.org/W3082529494","https://openalex.org/W3125610934","https://openalex.org/W3140009711","https://openalex.org/W3156922928","https://openalex.org/W3191352195","https://openalex.org/W3197476300","https://openalex.org/W4210507584","https://openalex.org/W4210987384","https://openalex.org/W4214930025","https://openalex.org/W4230900352","https://openalex.org/W4239510810","https://openalex.org/W4285159326","https://openalex.org/W4293241248","https://openalex.org/W4294170474","https://openalex.org/W4307327375","https://openalex.org/W4310117668","https://openalex.org/W4316506442","https://openalex.org/W6638241629","https://openalex.org/W6640462745","https://openalex.org/W6658265455","https://openalex.org/W6682141768"],"related_works":["https://openalex.org/W2056064246","https://openalex.org/W4211208004","https://openalex.org/W3047265282","https://openalex.org/W567261565","https://openalex.org/W2169394819","https://openalex.org/W2017484494","https://openalex.org/W2898732673","https://openalex.org/W2589428929","https://openalex.org/W2995689405","https://openalex.org/W2410053581"],"abstract_inverted_index":{"The":[0,114],"identification":[1],"of":[2,84,100],"biomarkers":[3,124],"is":[4],"crucial":[5],"for":[6],"cancer":[7,30],"diagnosis,":[8],"understanding":[9],"the":[10,55,65,78,85,98,101],"underlying":[11],"biological":[12],"mechanisms,":[13],"and":[14,33,80,87,105,129],"developing":[15],"targeted":[16],"therapies.":[17],"In":[18,93],"this":[19],"study,":[20],"we":[21],"propose":[22],"a":[23],"machine":[24],"learning":[25],"approach":[26],"to":[27,71,95],"predict":[28],"ovarian":[29],"patients\u2019":[31],"outcomes":[32],"platinum":[34,81],"resistance":[35,82],"status":[36,83],"using":[37,64,90,108],"publicly":[38],"available":[39],"gene":[40],"expression":[41],"data.":[42],"Six":[43],"classical":[44],"machine-learning":[45],"algorithms":[46],"are":[47,58,125],"compared":[48],"on":[49],"their":[50,61],"predictive":[51],"performance.":[52],"Those":[53],"with":[54,77],"highest":[56],"score":[57],"analyzed":[59],"by":[60],"feature":[62,109],"importance":[63,110],"SHAP":[66],"algorithm.":[67],"We":[68],"were":[69,112],"able":[70],"select":[72],"multiple":[73],"genes":[74,107,118],"that":[75,119],"correlated":[76],"outcome":[79],"patients":[86],"validated":[88],"those":[89],"Kaplan\u2013Meier":[91],"plots.":[92],"comparison":[94],"similar":[96],"approaches,":[97],"performance":[99],"models":[102],"was":[103],"higher,":[104],"different":[106],"analysis":[111],"identified.":[113],"most":[115],"promising":[116],"identified":[117],"could":[120],"be":[121],"used":[122],"as":[123],"TMEFF2,":[126],"ACSM3,":[127],"SLC4A1,":[128],"ALDH4A1.":[130]},"counts_by_year":[{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2}],"updated_date":"2026-02-28T09:26:25.869077","created_date":"2025-10-10T00:00:00"}
