{"id":"https://openalex.org/W4311528900","doi":"https://doi.org/10.3390/a15120458","title":"Global Repeat Map (GRM) Application: Finding All DNA Tandem Repeat Units","display_name":"Global Repeat Map (GRM) Application: Finding All DNA Tandem Repeat Units","publication_year":2022,"publication_date":"2022-12-05","ids":{"openalex":"https://openalex.org/W4311528900","doi":"https://doi.org/10.3390/a15120458"},"language":"en","primary_location":{"id":"doi:10.3390/a15120458","is_oa":true,"landing_page_url":"https://doi.org/10.3390/a15120458","pdf_url":"https://www.mdpi.com/1999-4893/15/12/458/pdf?version=1671678556","source":{"id":"https://openalex.org/S190629608","display_name":"Algorithms","issn_l":"1999-4893","issn":["1999-4893"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/1999-4893/15/12/458/pdf?version=1671678556","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001808519","display_name":"Matko Glun\u010di\u0107","orcid":"https://orcid.org/0000-0003-1802-3641"},"institutions":[{"id":"https://openalex.org/I181343428","display_name":"University of Zagreb","ror":"https://ror.org/00mv6sv71","country_code":"HR","type":"education","lineage":["https://openalex.org/I181343428"]}],"countries":["HR"],"is_corresponding":true,"raw_author_name":"Matko Glun\u010di\u0107","raw_affiliation_strings":["Theoretical Physics Department, Faculty of Science, University of Zagreb, 10000 Zagreb, Croatia"],"affiliations":[{"raw_affiliation_string":"Theoretical Physics Department, Faculty of Science, University of Zagreb, 10000 Zagreb, Croatia","institution_ids":["https://openalex.org/I181343428"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012379376","display_name":"Ines Vlahovi\u0107","orcid":"https://orcid.org/0000-0002-8534-4245"},"institutions":[{"id":"https://openalex.org/I4210102288","display_name":"Algebra University College","ror":"https://ror.org/019m6wk21","country_code":"HR","type":"education","lineage":["https://openalex.org/I4210102288"]}],"countries":["HR"],"is_corresponding":false,"raw_author_name":"Ines Vlahovi\u0107","raw_affiliation_strings":["Algebra LAB, Algebra University College, 10000 Zagreb, Croatia"],"affiliations":[{"raw_affiliation_string":"Algebra LAB, Algebra University College, 10000 Zagreb, Croatia","institution_ids":["https://openalex.org/I4210102288"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021603065","display_name":"Leo Mr\u0161i\u0107","orcid":"https://orcid.org/0000-0002-5093-3453"},"institutions":[{"id":"https://openalex.org/I4210102288","display_name":"Algebra University College","ror":"https://ror.org/019m6wk21","country_code":"HR","type":"education","lineage":["https://openalex.org/I4210102288"]}],"countries":["HR"],"is_corresponding":false,"raw_author_name":"Leo Mr\u0161i\u0107","raw_affiliation_strings":["Algebra LAB, Algebra University College, 10000 Zagreb, Croatia"],"affiliations":[{"raw_affiliation_string":"Algebra LAB, Algebra University College, 10000 Zagreb, Croatia","institution_ids":["https://openalex.org/I4210102288"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057367194","display_name":"V. Paar","orcid":"https://orcid.org/0000-0001-5349-9886"},"institutions":[{"id":"https://openalex.org/I1301669915","display_name":"Croatian Academy of Sciences and Arts","ror":"https://ror.org/03d04qg82","country_code":"HR","type":"government","lineage":["https://openalex.org/I1301669915"]},{"id":"https://openalex.org/I181343428","display_name":"University of Zagreb","ror":"https://ror.org/00mv6sv71","country_code":"HR","type":"education","lineage":["https://openalex.org/I181343428"]}],"countries":["HR"],"is_corresponding":false,"raw_author_name":"Vladimir Paar","raw_affiliation_strings":["Croatian Academy of Sciences and Arts, 10000 Zagreb, Croatia","Theoretical Physics Department, Faculty of Science, University of Zagreb, 10000 Zagreb, Croatia"],"affiliations":[{"raw_affiliation_string":"Croatian Academy of Sciences and Arts, 10000 Zagreb, Croatia","institution_ids":["https://openalex.org/I1301669915"]},{"raw_affiliation_string":"Theoretical Physics Department, Faculty of Science, University of Zagreb, 10000 Zagreb, Croatia","institution_ids":["https://openalex.org/I181343428"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5001808519"],"corresponding_institution_ids":["https://openalex.org/I181343428"],"apc_list":{"value":1400,"currency":"CHF","value_usd":1515},"apc_paid":{"value":1400,"currency":"CHF","value_usd":1515},"fwci":0.6872,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.67477431,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"15","issue":"12","first_page":"458","last_page":"458"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10949","display_name":"Genetic Neurodegenerative Diseases","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/tandem-repeat","display_name":"Tandem repeat","score":0.627129316329956},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5626266598701477},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5434607863426208},{"id":"https://openalex.org/keywords/centromere","display_name":"Centromere","score":0.5307324528694153},{"id":"https://openalex.org/keywords/telomere","display_name":"Telomere","score":0.4936131238937378},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4908057153224945},{"id":"https://openalex.org/keywords/chromatin","display_name":"Chromatin","score":0.4780305325984955},{"id":"https://openalex.org/keywords/chromosome","display_name":"Chromosome","score":0.4649105966091156},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.43951570987701416},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4348596930503845},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.40072762966156006},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3487517237663269},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.29730314016342163},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.27220457792282104}],"concepts":[{"id":"https://openalex.org/C27149982","wikidata":"https://www.wikidata.org/wiki/Q3456514","display_name":"Tandem repeat","level":4,"score":0.627129316329956},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5626266598701477},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5434607863426208},{"id":"https://openalex.org/C63491729","wikidata":"https://www.wikidata.org/wiki/Q14762596","display_name":"Centromere","level":4,"score":0.5307324528694153},{"id":"https://openalex.org/C177336024","wikidata":"https://www.wikidata.org/wiki/Q14872779","display_name":"Telomere","level":3,"score":0.4936131238937378},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4908057153224945},{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.4780305325984955},{"id":"https://openalex.org/C30481170","wikidata":"https://www.wikidata.org/wiki/Q37748","display_name":"Chromosome","level":3,"score":0.4649105966091156},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.43951570987701416},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4348596930503845},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.40072762966156006},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3487517237663269},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.29730314016342163},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.27220457792282104}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3390/a15120458","is_oa":true,"landing_page_url":"https://doi.org/10.3390/a15120458","pdf_url":"https://www.mdpi.com/1999-4893/15/12/458/pdf?version=1671678556","source":{"id":"https://openalex.org/S190629608","display_name":"Algorithms","issn_l":"1999-4893","issn":["1999-4893"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:b5f9b760d68443a29d3b9e5b168f50f5","is_oa":true,"landing_page_url":"https://doaj.org/article/b5f9b760d68443a29d3b9e5b168f50f5","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms, Vol 15, Iss 12, p 458 (2022)","raw_type":"article"},{"id":"pmh:oai:mdpi.com:/1999-4893/15/12/458/","is_oa":true,"landing_page_url":"https://dx.doi.org/10.3390/a15120458","pdf_url":null,"source":{"id":"https://openalex.org/S4306400947","display_name":"MDPI (MDPI AG)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210097602","host_organization_name":"Multidisciplinary Digital Publishing Institute (Switzerland)","host_organization_lineage":["https://openalex.org/I4210097602"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms; Volume 15; Issue 12; Pages: 458","raw_type":"Text"},{"id":"pmh:oai:repozitorij.pmf.unizg.hr:pmf_11399","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S7407055217","display_name":"Repository of the Faculty of Science, University of Zagreb","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms (ISSN 1999-4893), no. 12, vol. 15","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3390/a15120458","is_oa":true,"landing_page_url":"https://doi.org/10.3390/a15120458","pdf_url":"https://www.mdpi.com/1999-4893/15/12/458/pdf?version=1671678556","source":{"id":"https://openalex.org/S190629608","display_name":"Algorithms","issn_l":"1999-4893","issn":["1999-4893"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.46000000834465027}],"awards":[{"id":"https://openalex.org/G285569201","display_name":null,"funder_award_id":"IP-2019-04-2757","funder_id":"https://openalex.org/F4320322674","funder_display_name":"Hrvatska Zaklada za Znanost"}],"funders":[{"id":"https://openalex.org/F4320322674","display_name":"Hrvatska Zaklada za Znanost","ror":"https://ror.org/03n51vw80"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4311528900.pdf","grobid_xml":"https://content.openalex.org/works/W4311528900.grobid-xml"},"referenced_works_count":66,"referenced_works":["https://openalex.org/W1483073028","https://openalex.org/W1519003053","https://openalex.org/W1529475329","https://openalex.org/W1559638359","https://openalex.org/W1711999847","https://openalex.org/W1849542996","https://openalex.org/W1967134681","https://openalex.org/W1971507786","https://openalex.org/W1980973068","https://openalex.org/W1981172427","https://openalex.org/W1991311588","https://openalex.org/W1992076064","https://openalex.org/W1996240289","https://openalex.org/W1997730991","https://openalex.org/W2012359195","https://openalex.org/W2017216895","https://openalex.org/W2019661401","https://openalex.org/W2031340189","https://openalex.org/W2038151125","https://openalex.org/W2047789345","https://openalex.org/W2055466292","https://openalex.org/W2066624398","https://openalex.org/W2072885333","https://openalex.org/W2078291208","https://openalex.org/W2080900438","https://openalex.org/W2083864663","https://openalex.org/W2092524147","https://openalex.org/W2102879534","https://openalex.org/W2103704875","https://openalex.org/W2111921000","https://openalex.org/W2112814753","https://openalex.org/W2113333419","https://openalex.org/W2117723622","https://openalex.org/W2117968685","https://openalex.org/W2121642311","https://openalex.org/W2121886872","https://openalex.org/W2126615487","https://openalex.org/W2128934135","https://openalex.org/W2146683382","https://openalex.org/W2148213390","https://openalex.org/W2148590655","https://openalex.org/W2149919973","https://openalex.org/W2153199777","https://openalex.org/W2154782029","https://openalex.org/W2155508478","https://openalex.org/W2158155007","https://openalex.org/W2160352834","https://openalex.org/W2160676512","https://openalex.org/W2255688436","https://openalex.org/W2315807611","https://openalex.org/W2333358954","https://openalex.org/W2480811611","https://openalex.org/W2580012258","https://openalex.org/W2605592309","https://openalex.org/W2608031946","https://openalex.org/W2754819388","https://openalex.org/W2790208381","https://openalex.org/W2921420820","https://openalex.org/W2970433217","https://openalex.org/W2977428858","https://openalex.org/W2982599786","https://openalex.org/W3004331958","https://openalex.org/W3100260212","https://openalex.org/W3216110585","https://openalex.org/W4220937793","https://openalex.org/W6649876893"],"related_works":["https://openalex.org/W4387492829","https://openalex.org/W2096760656","https://openalex.org/W1990232869","https://openalex.org/W1976587332","https://openalex.org/W2086422260","https://openalex.org/W1813908955","https://openalex.org/W2019196984","https://openalex.org/W4386219590","https://openalex.org/W2991662067","https://openalex.org/W1908751848"],"abstract_inverted_index":{"Tandem":[0],"repeats":[1],"(TRs)":[2],"are":[3,44],"important":[4],"components":[5],"of":[6,68,84,87,111,123,133,151,194,209,218,239,255,291,294],"eukaryotic":[7],"genomes;":[8],"they":[9,17,28],"have":[10],"both":[11],"structural":[12],"and":[13,25,32,40,51,62,78,141,165,172,181,221,260,285],"functional":[14],"roles:":[15],"(i)":[16],"form":[18],"essential":[19,72],"chromosome":[20,57,167],"structures":[21],"such":[22],"as":[23,205,207],"centromeres":[24],"telomeres;":[26],"(ii)":[27],"modify":[29],"chromatin":[30],"structure":[31,220],"affect":[33],"transcription,":[34],"resulting":[35],"in":[36,49,89,244,257,267],"altered":[37],"gene":[38],"expression":[39],"protein":[41],"abundance.":[42],"There":[43],"established":[45],"links":[46],"between":[47,53],"variations":[48],"TRs":[50,88,124,240,263],"incompatibilities":[52],"species,":[54],"evolutionary":[55],"development,":[56],"mis-segregation,":[58],"aging,":[59],"cancer":[60],"outcomes":[61],"different":[63],"diseases.":[64],"Given":[65],"the":[66,82,109,112,126,131,134,148,158,197,202,268,278,289],"importance":[67],"TRs,":[69,102,195],"it":[70,233,249],"seemed":[71],"to":[73,106,201,252],"develop":[74],"an":[75,282],"efficient,":[76,283],"sensitive":[77,284],"automated":[79,286],"application":[80,99,176,280],"for":[81,100,288],"identification":[83,122,290],"all":[85,108,192,253,292],"kinds":[86,293],"various":[90,265],"genomic":[91],"sequences.":[92],"Here,":[93],"we":[94,161,274],"present":[95],"our":[96,175],"new":[97],"GRM":[98,117,159,279],"identifying":[101],"which":[103],"is":[104,250,281],"designed":[105],"overcome":[107],"limitations":[110],"currently":[113],"existing":[114],"algorithms.":[115],"Our":[116],"algorithm":[118],"provides":[119],"a":[120,184,236],"straightforward":[121],"using":[125,142],"frequency":[127],"domain":[128],"but":[129,146],"avoiding":[130,147],"mapping":[132],"symbolic":[135],"DNA":[136],"sequence":[137,219,269],"into":[138],"numerical":[139],"sequence,":[140],"key":[143,155],"string":[144],"matching,":[145],"statistical":[149],"methods":[150],"locally":[152],"optimizing":[153],"individual":[154],"strings.":[156],"Using":[157],"application,":[160],"analyzed":[162],"human,":[163],"chimpanzee":[164],"mouse":[166],"19":[168],"genome":[169],"sequences":[170],"(RefSeqs),":[171],"showed":[173],"that":[174,235,277],"was":[177],"very":[178,203],"fast,":[179],"efficient":[180],"simple,":[182],"with":[183,264],"powerful":[185],"graphical":[186],"user":[187],"interface.":[188],"It":[189,211],"can":[190,241,261,275],"identify":[191,262],"types":[193,254],"from":[196],"smallest":[198],"(2":[199],"bp)":[200],"large,":[204],"large":[206],"tens":[208],"kilobasepairs.":[210],"does":[212,222],"not":[213,223],"require":[214,224],"any":[215,225],"prior":[216],"knowledge":[217],"user-defined":[226],"parameters":[227],"or":[228],"thresholds.":[229],"In":[230],"this":[231,272],"way,":[232],"ensures":[234],"full":[237],"spectrum":[238],"be":[242],"detected":[243],"just":[245],"one":[246],"step.":[247],"Furthermore,":[248],"robust":[251],"mutations":[256],"repeat":[258],"copies":[259],"complexities":[266],"pattern.":[270],"From":[271],"perspective,":[273],"conclude":[276],"method":[287],"TRs.":[295]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":1}],"updated_date":"2026-03-02T08:37:19.008085","created_date":"2025-10-10T00:00:00"}
