{"id":"https://openalex.org/W4206496732","doi":"https://doi.org/10.3390/a15010021","title":"Graph Based Feature Selection for Reduction of Dimensionality in Next-Generation RNA Sequencing Datasets","display_name":"Graph Based Feature Selection for Reduction of Dimensionality in Next-Generation RNA Sequencing Datasets","publication_year":2022,"publication_date":"2022-01-10","ids":{"openalex":"https://openalex.org/W4206496732","doi":"https://doi.org/10.3390/a15010021"},"language":"en","primary_location":{"id":"doi:10.3390/a15010021","is_oa":true,"landing_page_url":"https://doi.org/10.3390/a15010021","pdf_url":"https://www.mdpi.com/1999-4893/15/1/21/pdf?version=1641890169","source":{"id":"https://openalex.org/S190629608","display_name":"Algorithms","issn_l":"1999-4893","issn":["1999-4893"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/1999-4893/15/1/21/pdf?version=1641890169","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018693051","display_name":"Consolata Gakii","orcid":"https://orcid.org/0000-0003-2783-9992"},"institutions":[{"id":"https://openalex.org/I3132506069","display_name":"University of Embu","ror":"https://ror.org/00hzs6t60","country_code":"KE","type":"education","lineage":["https://openalex.org/I3132506069"]},{"id":"https://openalex.org/I26805570","display_name":"Jomo Kenyatta University of Agriculture and Technology","ror":"https://ror.org/015h5sy57","country_code":"KE","type":"education","lineage":["https://openalex.org/I26805570"]}],"countries":["KE"],"is_corresponding":true,"raw_author_name":"Consolata Gakii","raw_affiliation_strings":["Department of Computing and Information Technology, University of Embu, P.O. Box 6-60100, Embu 60100, Kenya","School of Computing and Information Technology, Jomo Kenyatta University of Agriculture and Technology, P.O. Box 62000-00200, Nairobi 00200, Kenya"],"affiliations":[{"raw_affiliation_string":"Department of Computing and Information Technology, University of Embu, P.O. Box 6-60100, Embu 60100, Kenya","institution_ids":["https://openalex.org/I3132506069"]},{"raw_affiliation_string":"School of Computing and Information Technology, Jomo Kenyatta University of Agriculture and Technology, P.O. Box 62000-00200, Nairobi 00200, Kenya","institution_ids":["https://openalex.org/I26805570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070478605","display_name":"Paul O. Mireji","orcid":"https://orcid.org/0000-0002-7965-2428"},"institutions":[{"id":"https://openalex.org/I4210098278","display_name":"Kenya Agricultural and Livestock Research Organization","ror":"https://ror.org/00wawdr98","country_code":"KE","type":"facility","lineage":["https://openalex.org/I4210098278"]}],"countries":["KE"],"is_corresponding":false,"raw_author_name":"Paul O. Mireji","raw_affiliation_strings":["Biotechnology Research Institute, Kenya Agricultural and Livestock Research Organization, P.O. Box 362-00902, Kikuyu 00902, Kenya"],"affiliations":[{"raw_affiliation_string":"Biotechnology Research Institute, Kenya Agricultural and Livestock Research Organization, P.O. Box 362-00902, Kikuyu 00902, Kenya","institution_ids":["https://openalex.org/I4210098278"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051388166","display_name":"Richard Rimiru","orcid":"https://orcid.org/0000-0003-3190-1007"},"institutions":[{"id":"https://openalex.org/I26805570","display_name":"Jomo Kenyatta University of Agriculture and Technology","ror":"https://ror.org/015h5sy57","country_code":"KE","type":"education","lineage":["https://openalex.org/I26805570"]}],"countries":["KE"],"is_corresponding":false,"raw_author_name":"Richard Rimiru","raw_affiliation_strings":["School of Computing and Information Technology, Jomo Kenyatta University of Agriculture and Technology, P.O. Box 62000-00200, Nairobi 00200, Kenya"],"affiliations":[{"raw_affiliation_string":"School of Computing and Information Technology, Jomo Kenyatta University of Agriculture and Technology, P.O. Box 62000-00200, Nairobi 00200, Kenya","institution_ids":["https://openalex.org/I26805570"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5018693051"],"corresponding_institution_ids":["https://openalex.org/I26805570","https://openalex.org/I3132506069"],"apc_list":{"value":1400,"currency":"CHF","value_usd":1515},"apc_paid":{"value":1400,"currency":"CHF","value_usd":1515},"fwci":1.0293,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.73830136,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"15","issue":"1","first_page":"21","last_page":"21"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9932000041007996,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/feature-selection","display_name":"Feature selection","score":0.7534679174423218},{"id":"https://openalex.org/keywords/dimensionality-reduction","display_name":"Dimensionality reduction","score":0.6864322423934937},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6033198833465576},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.5427215099334717},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5420989990234375},{"id":"https://openalex.org/keywords/principal-component-analysis","display_name":"Principal component analysis","score":0.5002293586730957},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.49019747972488403},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.487842321395874},{"id":"https://openalex.org/keywords/curse-of-dimensionality","display_name":"Curse of dimensionality","score":0.4278528392314911},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.10786086320877075}],"concepts":[{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.7534679174423218},{"id":"https://openalex.org/C70518039","wikidata":"https://www.wikidata.org/wiki/Q16000077","display_name":"Dimensionality reduction","level":2,"score":0.6864322423934937},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6033198833465576},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.5427215099334717},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5420989990234375},{"id":"https://openalex.org/C27438332","wikidata":"https://www.wikidata.org/wiki/Q2873","display_name":"Principal component analysis","level":2,"score":0.5002293586730957},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.49019747972488403},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.487842321395874},{"id":"https://openalex.org/C111030470","wikidata":"https://www.wikidata.org/wiki/Q1430460","display_name":"Curse of dimensionality","level":2,"score":0.4278528392314911},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.10786086320877075}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.3390/a15010021","is_oa":true,"landing_page_url":"https://doi.org/10.3390/a15010021","pdf_url":"https://www.mdpi.com/1999-4893/15/1/21/pdf?version=1641890169","source":{"id":"https://openalex.org/S190629608","display_name":"Algorithms","issn_l":"1999-4893","issn":["1999-4893"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:2b6b6001a0114ea78488cfa6fc099a32","is_oa":true,"landing_page_url":"https://doaj.org/article/2b6b6001a0114ea78488cfa6fc099a32","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms, Vol 15, Iss 1, p 21 (2022)","raw_type":"article"},{"id":"pmh:oai:mdpi.com:/1999-4893/15/1/21/","is_oa":true,"landing_page_url":"https://dx.doi.org/10.3390/a15010021","pdf_url":null,"source":{"id":"https://openalex.org/S4306400947","display_name":"MDPI (MDPI AG)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210097602","host_organization_name":"Multidisciplinary Digital Publishing Institute (Switzerland)","host_organization_lineage":["https://openalex.org/I4210097602"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms; Volume 15; Issue 1; Pages: 21","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3390/a15010021","is_oa":true,"landing_page_url":"https://doi.org/10.3390/a15010021","pdf_url":"https://www.mdpi.com/1999-4893/15/1/21/pdf?version=1641890169","source":{"id":"https://openalex.org/S190629608","display_name":"Algorithms","issn_l":"1999-4893","issn":["1999-4893"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4206496732.pdf","grobid_xml":"https://content.openalex.org/works/W4206496732.grobid-xml"},"referenced_works_count":56,"referenced_works":["https://openalex.org/W1487321909","https://openalex.org/W1591099225","https://openalex.org/W1593753825","https://openalex.org/W1661871015","https://openalex.org/W1952835952","https://openalex.org/W1958462865","https://openalex.org/W2102148524","https://openalex.org/W2108821163","https://openalex.org/W2119387367","https://openalex.org/W2133990480","https://openalex.org/W2134110221","https://openalex.org/W2149298154","https://openalex.org/W2156631105","https://openalex.org/W2166559705","https://openalex.org/W2167101736","https://openalex.org/W2187183197","https://openalex.org/W2342358015","https://openalex.org/W2344681634","https://openalex.org/W2468271545","https://openalex.org/W2475188805","https://openalex.org/W2519043672","https://openalex.org/W2575877130","https://openalex.org/W2615505937","https://openalex.org/W2755007803","https://openalex.org/W2767768852","https://openalex.org/W2769113662","https://openalex.org/W2796736866","https://openalex.org/W2800139390","https://openalex.org/W2804487525","https://openalex.org/W2807672779","https://openalex.org/W2809265185","https://openalex.org/W2911278693","https://openalex.org/W2921600633","https://openalex.org/W2942615852","https://openalex.org/W2947787176","https://openalex.org/W2950336271","https://openalex.org/W2953605441","https://openalex.org/W2964278775","https://openalex.org/W2966803100","https://openalex.org/W2996039339","https://openalex.org/W2996274328","https://openalex.org/W3024333932","https://openalex.org/W3034712888","https://openalex.org/W3129194432","https://openalex.org/W3134720996","https://openalex.org/W3165264321","https://openalex.org/W3184304603","https://openalex.org/W3188223044","https://openalex.org/W3193515334","https://openalex.org/W3194343069","https://openalex.org/W3198350258","https://openalex.org/W3215916291","https://openalex.org/W6686822178","https://openalex.org/W6721359324","https://openalex.org/W6744035089","https://openalex.org/W6779979571"],"related_works":["https://openalex.org/W2579148721","https://openalex.org/W4387893611","https://openalex.org/W2347335694","https://openalex.org/W2091056927","https://openalex.org/W2067407580","https://openalex.org/W4389669152","https://openalex.org/W2038514069","https://openalex.org/W1967233468","https://openalex.org/W2009181529","https://openalex.org/W4250857377"],"abstract_inverted_index":{"Analysis":[0],"of":[1,31,90,122,126,172],"high-dimensional":[2,180],"data,":[3],"with":[4,165],"more":[5],"features":[6,49,62,107,138,178],"(p)":[7],"than":[8],"observations":[9],"(N)":[10],"(p&gt;N),":[11],"places":[12],"significant":[13],"demand":[14],"in":[15,100,144,179],"cost":[16],"and":[17,43,71,95,124,156,174],"memory":[18],"computational":[19],"usage":[20],"attributes.":[21],"Feature":[22],"selection":[23,86,155],"can":[24],"be":[25,151],"used":[26,35,74],"to":[27,47,75,142],"reduce":[28],"the":[29,32,83,88,110,114,132,160],"dimensionality":[30],"data.":[33,182],"We":[34],"a":[36,120,147,169],"graph-based":[37,84,111,161],"approach,":[38],"principal":[39],"component":[40],"analysis":[41],"(PCA)":[42],"recursive":[44],"feature":[45,85,154],"elimination":[46],"select":[48],"for":[50,65],"classification":[51,157],"from":[52,55],"RNAseq":[53,181],"datasets":[54],"two":[56,116],"lung":[57],"cancer":[58],"datasets.":[59,102],"The":[60,128],"selected":[61,108],"were":[63,73],"discretized":[64],"association":[66,104],"rule":[67,105,166],"mining":[68,167],"where":[69],"support":[70,121],"lift":[72,125],"generate":[76],"informative":[77],"rules.":[78],"Our":[79],"results":[80],"show":[81],"that":[82,149],"improved":[87],"performance":[89],"sequential":[91],"minimal":[92],"optimization":[93],"(SMO)":[94],"multilayer":[96],"perceptron":[97],"classifiers":[98],"(MLP)":[99],"both":[101],"In":[103],"mining,":[106],"using":[109],"approach":[112,163],"outperformed":[113],"other":[115],"feature-selection":[117,162],"techniques":[118],"at":[119],"0.5":[123],"2.":[127],"non-redundant":[129],"rules":[130],"reflect":[131],"inherent":[133],"relationships":[134],"between":[135,177],"features.":[136],"Biological":[137],"are":[139],"usually":[140],"related":[141],"functions":[143],"living":[145],"systems,":[146],"relationship":[148],"cannot":[150],"deduced":[152],"by":[153],"alone.":[158],"Therefore,":[159],"combined":[164],"is":[168],"suitable":[170],"way":[171],"selecting":[173],"finding":[175],"associations":[176]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
