{"id":"https://openalex.org/W3084236661","doi":"https://doi.org/10.3390/a13090225","title":"A Linear-Time Algorithm for the Isometric Reconciliation of Unrooted Trees","display_name":"A Linear-Time Algorithm for the Isometric Reconciliation of Unrooted Trees","publication_year":2020,"publication_date":"2020-09-08","ids":{"openalex":"https://openalex.org/W3084236661","doi":"https://doi.org/10.3390/a13090225","mag":"3084236661"},"language":"en","primary_location":{"id":"doi:10.3390/a13090225","is_oa":true,"landing_page_url":"https://doi.org/10.3390/a13090225","pdf_url":"https://www.mdpi.com/1999-4893/13/9/225/pdf","source":{"id":"https://openalex.org/S190629608","display_name":"Algorithms","issn_l":"1999-4893","issn":["1999-4893"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/1999-4893/13/9/225/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058053699","display_name":"Bro\u0148a Brejov\u00e1","orcid":"https://orcid.org/0000-0002-9483-1766"},"institutions":[{"id":"https://openalex.org/I74788687","display_name":"Comenius University Bratislava","ror":"https://ror.org/0587ef340","country_code":"SK","type":"education","lineage":["https://openalex.org/I74788687"]}],"countries":["SK"],"is_corresponding":true,"raw_author_name":"Bro\u0148a Brejov\u00e1","raw_affiliation_strings":["Department of Computer Science, Faculty of Mathematics, Physics, and Informatics, Comenius University, Mlynsk\u00e1 dolina, 842 48 Bratislava, Slovakia"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Faculty of Mathematics, Physics, and Informatics, Comenius University, Mlynsk\u00e1 dolina, 842 48 Bratislava, Slovakia","institution_ids":["https://openalex.org/I74788687"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056423330","display_name":"Rastislav Kr\u00e1\u013eovi\u010d","orcid":"https://orcid.org/0000-0003-1121-1009"},"institutions":[{"id":"https://openalex.org/I74788687","display_name":"Comenius University Bratislava","ror":"https://ror.org/0587ef340","country_code":"SK","type":"education","lineage":["https://openalex.org/I74788687"]}],"countries":["SK"],"is_corresponding":true,"raw_author_name":"Rastislav Kr\u00e1lovi\u010d","raw_affiliation_strings":["Department of Computer Science, Faculty of Mathematics, Physics, and Informatics, Comenius University, Mlynsk\u00e1 dolina, 842 48 Bratislava, Slovakia"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Faculty of Mathematics, Physics, and Informatics, Comenius University, Mlynsk\u00e1 dolina, 842 48 Bratislava, Slovakia","institution_ids":["https://openalex.org/I74788687"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5056423330","https://openalex.org/A5058053699"],"corresponding_institution_ids":["https://openalex.org/I74788687"],"apc_list":{"value":1400,"currency":"CHF","value_usd":1515},"apc_paid":{"value":1400,"currency":"CHF","value_usd":1515},"fwci":0.0829,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.44603619,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"13","issue":"9","first_page":"225","last_page":"225"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.8481098413467407},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.6709945201873779},{"id":"https://openalex.org/keywords/root","display_name":"Root (linguistics)","score":0.5488501191139221},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.5377597808837891},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5114316344261169},{"id":"https://openalex.org/keywords/enhanced-data-rates-for-gsm-evolution","display_name":"Enhanced Data Rates for GSM Evolution","score":0.5052464604377747},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.49947333335876465},{"id":"https://openalex.org/keywords/isometric-exercise","display_name":"Isometric exercise","score":0.44790056347846985},{"id":"https://openalex.org/keywords/phylogenetic-network","display_name":"Phylogenetic network","score":0.43006882071495056},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.42728960514068604},{"id":"https://openalex.org/keywords/time-complexity","display_name":"Time complexity","score":0.42240482568740845},{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.41584721207618713},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.34385043382644653},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3267155885696411},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2699190378189087},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.14650025963783264},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13782662153244019}],"concepts":[{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.8481098413467407},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.6709945201873779},{"id":"https://openalex.org/C171078966","wikidata":"https://www.wikidata.org/wiki/Q111029","display_name":"Root (linguistics)","level":2,"score":0.5488501191139221},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.5377597808837891},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5114316344261169},{"id":"https://openalex.org/C162307627","wikidata":"https://www.wikidata.org/wiki/Q204833","display_name":"Enhanced Data Rates for GSM Evolution","level":2,"score":0.5052464604377747},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.49947333335876465},{"id":"https://openalex.org/C103486182","wikidata":"https://www.wikidata.org/wiki/Q1216236","display_name":"Isometric exercise","level":2,"score":0.44790056347846985},{"id":"https://openalex.org/C26619641","wikidata":"https://www.wikidata.org/wiki/Q3142246","display_name":"Phylogenetic network","level":4,"score":0.43006882071495056},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.42728960514068604},{"id":"https://openalex.org/C311688","wikidata":"https://www.wikidata.org/wiki/Q2393193","display_name":"Time complexity","level":2,"score":0.42240482568740845},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.41584721207618713},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.34385043382644653},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3267155885696411},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2699190378189087},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.14650025963783264},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13782662153244019},{"id":"https://openalex.org/C42407357","wikidata":"https://www.wikidata.org/wiki/Q521","display_name":"Physiology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.3390/a13090225","is_oa":true,"landing_page_url":"https://doi.org/10.3390/a13090225","pdf_url":"https://www.mdpi.com/1999-4893/13/9/225/pdf","source":{"id":"https://openalex.org/S190629608","display_name":"Algorithms","issn_l":"1999-4893","issn":["1999-4893"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:fa0625c6f4bf436f9c74c1d48c4b2310","is_oa":true,"landing_page_url":"https://doaj.org/article/fa0625c6f4bf436f9c74c1d48c4b2310","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms, Vol 13, Iss 9, p 225 (2020)","raw_type":"article"},{"id":"pmh:oai:mdpi.com:/1999-4893/13/9/225/","is_oa":true,"landing_page_url":"https://dx.doi.org/10.3390/a13090225","pdf_url":null,"source":{"id":"https://openalex.org/S4306400947","display_name":"MDPI (MDPI AG)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210097602","host_organization_name":"Multidisciplinary Digital Publishing Institute (Switzerland)","host_organization_lineage":["https://openalex.org/I4210097602"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms; Volume 13; Issue 9; Pages: 225","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3390/a13090225","is_oa":true,"landing_page_url":"https://doi.org/10.3390/a13090225","pdf_url":"https://www.mdpi.com/1999-4893/13/9/225/pdf","source":{"id":"https://openalex.org/S190629608","display_name":"Algorithms","issn_l":"1999-4893","issn":["1999-4893"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1537326666","display_name":null,"funder_award_id":"APVV-18-0239","funder_id":"https://openalex.org/F4320323251","funder_display_name":"Agent\u00fara na Podporu V\u00fdskumu a V\u00fdvoja"},{"id":"https://openalex.org/G345157878","display_name":null,"funder_award_id":"1/0458/18","funder_id":"https://openalex.org/F4320323641","funder_display_name":"Vedeck\u00e1 Grantov\u00e1 Agent\u00fara M\u0160VVa\u0160 SR a SAV"},{"id":"https://openalex.org/G7571258075","display_name":null,"funder_award_id":"1/0463/20","funder_id":"https://openalex.org/F4320323641","funder_display_name":"Vedeck\u00e1 Grantov\u00e1 Agent\u00fara M\u0160VVa\u0160 SR a SAV"},{"id":"https://openalex.org/G7864580333","display_name":null,"funder_award_id":"1/0601/20","funder_id":"https://openalex.org/F4320323641","funder_display_name":"Vedeck\u00e1 Grantov\u00e1 Agent\u00fara M\u0160VVa\u0160 SR a SAV"}],"funders":[{"id":"https://openalex.org/F4320323251","display_name":"Agent\u00fara na Podporu V\u00fdskumu a V\u00fdvoja","ror":"https://ror.org/037nx0e70"},{"id":"https://openalex.org/F4320323641","display_name":"Vedeck\u00e1 Grantov\u00e1 Agent\u00fara M\u0160VVa\u0160 SR a SAV","ror":"https://ror.org/044gwpv05"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3084236661.pdf","grobid_xml":"https://content.openalex.org/works/W3084236661.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W1978858440","https://openalex.org/W2011999472","https://openalex.org/W2053851102","https://openalex.org/W2090619251","https://openalex.org/W2097706568","https://openalex.org/W2112755610","https://openalex.org/W2118268187","https://openalex.org/W2132318428","https://openalex.org/W2135281627","https://openalex.org/W2137120608","https://openalex.org/W2151229046","https://openalex.org/W2153893912","https://openalex.org/W2158692417","https://openalex.org/W2166106146","https://openalex.org/W2170748243","https://openalex.org/W2626652475","https://openalex.org/W2952556895","https://openalex.org/W6674647444","https://openalex.org/W6677017098","https://openalex.org/W6680713955"],"related_works":["https://openalex.org/W2340005245","https://openalex.org/W1547508840","https://openalex.org/W2052773812","https://openalex.org/W2739728095","https://openalex.org/W2065083790","https://openalex.org/W2604174992","https://openalex.org/W2057191541","https://openalex.org/W2105489997","https://openalex.org/W2159892619","https://openalex.org/W1988675506"],"abstract_inverted_index":{"In":[0,63],"the":[1,14,27,43,47,51,59,68,96,106,120],"reconciliation":[2,39,92],"problem,":[3],"we":[4,66],"are":[5,73,79],"given":[6],"two":[7],"phylogenetic":[8],"trees.":[9],"A":[10,38],"species":[11,52],"tree":[12,25,45],"represents":[13,26],"evolutionary":[15],"history":[16,28],"of":[17,20,29,32,42,50,108],"a":[18,23,30,91,101,115],"group":[19],"species,":[21],"and":[22,54,75,88],"gene":[24,44,60],"family":[31,61],"related":[33],"genes":[34],"within":[35],"these":[36],"species.":[37],"maps":[40],"nodes":[41],"to":[46,57,85,89,119],"corresponding":[48],"points":[49],"tree,":[53],"thus":[55],"helps":[56],"interpret":[58],"history.":[62],"this":[64],"paper,":[65],"study":[67],"case":[69],"when":[70],"both":[71],"trees":[72],"unrooted":[74],"their":[76],"edge":[77,97],"lengths":[78],"known":[80],"exactly.":[81],"The":[82],"goal":[83],"is":[84,114],"root":[86,111],"them":[87],"find":[90],"that":[93],"agrees":[94],"with":[95],"lengths.":[98],"We":[99],"show":[100],"linear-time":[102],"algorithm":[103],"for":[104],"finding":[105],"set":[107],"all":[109],"possible":[110],"locations,":[112],"which":[113],"significant":[116],"improvement":[117],"compared":[118],"previous":[121],"O(N3logN)":[122],"algorithm.":[123]},"counts_by_year":[{"year":2022,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2020-09-14T00:00:00"}