{"id":"https://openalex.org/W3024970380","doi":"https://doi.org/10.3390/a13050124","title":"A Novel Method for Inference of Chemical Compounds of Cycle Index Two with Desired Properties Based on Artificial Neural Networks and Integer Programming","display_name":"A Novel Method for Inference of Chemical Compounds of Cycle Index Two with Desired Properties Based on Artificial Neural Networks and Integer Programming","publication_year":2020,"publication_date":"2020-05-18","ids":{"openalex":"https://openalex.org/W3024970380","doi":"https://doi.org/10.3390/a13050124","mag":"3024970380"},"language":"en","primary_location":{"id":"doi:10.3390/a13050124","is_oa":true,"landing_page_url":"https://doi.org/10.3390/a13050124","pdf_url":"https://www.mdpi.com/1999-4893/13/5/124/pdf?version=1590575925","source":{"id":"https://openalex.org/S190629608","display_name":"Algorithms","issn_l":"1999-4893","issn":["1999-4893"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/1999-4893/13/5/124/pdf?version=1590575925","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038066385","display_name":"Jianshen Zhu","orcid":"https://orcid.org/0000-0002-1287-9572"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Jianshen Zhu","raw_affiliation_strings":["Department of Applied Mathematics and Physics, Kyoto University, Kyoto 606-8501, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Applied Mathematics and Physics, Kyoto University, Kyoto 606-8501, Japan","institution_ids":["https://openalex.org/I22299242"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5118899862","display_name":"Chenxi Wang","orcid":"https://orcid.org/0009-0006-2876-4645"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Chenxi Wang","raw_affiliation_strings":["Department of Applied Mathematics and Physics, Kyoto University, Kyoto 606-8501, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Applied Mathematics and Physics, Kyoto University, Kyoto 606-8501, Japan","institution_ids":["https://openalex.org/I22299242"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084691948","display_name":"Aleksandar Shurbevski","orcid":"https://orcid.org/0000-0001-9224-6929"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Aleksandar Shurbevski","raw_affiliation_strings":["Department of Applied Mathematics and Physics, Kyoto University, Kyoto 606-8501, Japan"],"raw_orcid":"https://orcid.org/0000-0001-9224-6929","affiliations":[{"raw_affiliation_string":"Department of Applied Mathematics and Physics, Kyoto University, Kyoto 606-8501, Japan","institution_ids":["https://openalex.org/I22299242"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073738140","display_name":"Hiroshi Nagamochi","orcid":"https://orcid.org/0000-0002-8332-1517"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Hiroshi Nagamochi","raw_affiliation_strings":["Department of Applied Mathematics and Physics, Kyoto University, Kyoto 606-8501, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Applied Mathematics and Physics, Kyoto University, Kyoto 606-8501, Japan","institution_ids":["https://openalex.org/I22299242"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016330265","display_name":"Tatsuya Akutsu","orcid":"https://orcid.org/0000-0001-9763-797X"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I4399598384","display_name":"Kyoto University Institute for Chemical Research","ror":"https://ror.org/0349bbg69","country_code":null,"type":"facility","lineage":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Tatsuya Akutsu","raw_affiliation_strings":["Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji 611-0011, Japan"],"raw_orcid":"https://orcid.org/0000-0001-9763-797X","affiliations":[{"raw_affiliation_string":"Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji 611-0011, Japan","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5016330265","https://openalex.org/A5073738140"],"corresponding_institution_ids":["https://openalex.org/I22299242","https://openalex.org/I4399598384"],"apc_list":{"value":1600,"currency":"CHF","value_usd":1782},"apc_paid":{"value":1600,"currency":"CHF","value_usd":1782},"fwci":1.6481,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.87223232,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"13","issue":"5","first_page":"124","last_page":"124"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10908","display_name":"Analytical Chemistry and Chromatography","score":0.9851999878883362,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11053","display_name":"Process Optimization and Integration","score":0.9544000029563904,"subfield":{"id":"https://openalex.org/subfields/2207","display_name":"Control and Systems Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.6829211711883545},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6039696931838989},{"id":"https://openalex.org/keywords/integer","display_name":"Integer (computer science)","score":0.5425111055374146},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.49598607420921326},{"id":"https://openalex.org/keywords/inverse","display_name":"Inverse","score":0.4637276530265808},{"id":"https://openalex.org/keywords/integer-programming","display_name":"Integer programming","score":0.45697009563446045},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4204733967781067},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.41101783514022827},{"id":"https://openalex.org/keywords/mathematical-optimization","display_name":"Mathematical optimization","score":0.3842083811759949},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.30949515104293823}],"concepts":[{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.6829211711883545},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6039696931838989},{"id":"https://openalex.org/C97137487","wikidata":"https://www.wikidata.org/wiki/Q729138","display_name":"Integer (computer science)","level":2,"score":0.5425111055374146},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.49598607420921326},{"id":"https://openalex.org/C207467116","wikidata":"https://www.wikidata.org/wiki/Q4385666","display_name":"Inverse","level":2,"score":0.4637276530265808},{"id":"https://openalex.org/C56086750","wikidata":"https://www.wikidata.org/wiki/Q6042592","display_name":"Integer programming","level":2,"score":0.45697009563446045},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4204733967781067},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.41101783514022827},{"id":"https://openalex.org/C126255220","wikidata":"https://www.wikidata.org/wiki/Q141495","display_name":"Mathematical optimization","level":1,"score":0.3842083811759949},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.30949515104293823},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3390/a13050124","is_oa":true,"landing_page_url":"https://doi.org/10.3390/a13050124","pdf_url":"https://www.mdpi.com/1999-4893/13/5/124/pdf?version=1590575925","source":{"id":"https://openalex.org/S190629608","display_name":"Algorithms","issn_l":"1999-4893","issn":["1999-4893"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms","raw_type":"journal-article"},{"id":"pmh:oai:repository.kulib.kyoto-u.ac.jp:2433/261997","is_oa":true,"landing_page_url":"http://hdl.handle.net/2433/261997","pdf_url":"http://hdl.handle.net/2433/261997","source":{"id":"https://openalex.org/S4306401454","display_name":"Kyoto University Research Information Repository (Kyoto University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I22299242","host_organization_name":"Kyoto University","host_organization_lineage":["https://openalex.org/I22299242"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"journal article"},{"id":"pmh:oai:doaj.org/article:e73d17b4eeff4667b25985178f0a3719","is_oa":true,"landing_page_url":"https://doaj.org/article/e73d17b4eeff4667b25985178f0a3719","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms, Vol 13, Iss 5, p 124 (2020)","raw_type":"article"},{"id":"pmh:oai:mdpi.com:/1999-4893/13/5/124/","is_oa":true,"landing_page_url":"http://dx.doi.org/10.3390/a13050124","pdf_url":null,"source":{"id":"https://openalex.org/S4306400947","display_name":"MDPI (MDPI AG)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210097602","host_organization_name":"Multidisciplinary Digital Publishing Institute (Switzerland)","host_organization_lineage":["https://openalex.org/I4210097602"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3390/a13050124","is_oa":true,"landing_page_url":"https://doi.org/10.3390/a13050124","pdf_url":"https://www.mdpi.com/1999-4893/13/5/124/pdf?version=1590575925","source":{"id":"https://openalex.org/S190629608","display_name":"Algorithms","issn_l":"1999-4893","issn":["1999-4893"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5626364646","display_name":"Theory design and implementation of practical optimization and enumeration algorithms over graph structure","funder_award_id":"20K11691","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G5756352865","display_name":"Analysis and Applications of Discrete Preimage Problems","funder_award_id":"18H04113","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"}],"funders":[{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3024970380.pdf","grobid_xml":"https://content.openalex.org/works/W3024970380.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W1570912112","https://openalex.org/W1982792699","https://openalex.org/W1992156271","https://openalex.org/W2017254234","https://openalex.org/W2032179189","https://openalex.org/W2070643689","https://openalex.org/W2077654283","https://openalex.org/W2079011386","https://openalex.org/W2087315554","https://openalex.org/W2132437698","https://openalex.org/W2133756602","https://openalex.org/W2267384021","https://openalex.org/W2529996553","https://openalex.org/W2549411284","https://openalex.org/W2578240541","https://openalex.org/W2592262780","https://openalex.org/W2592725663","https://openalex.org/W2763220183","https://openalex.org/W2948683027","https://openalex.org/W3016636888","https://openalex.org/W3021964567","https://openalex.org/W3027161112","https://openalex.org/W3083232557","https://openalex.org/W3098269892","https://openalex.org/W6733974131"],"related_works":["https://openalex.org/W2055243143","https://openalex.org/W2052299349","https://openalex.org/W1986418932","https://openalex.org/W2357796999","https://openalex.org/W4321636575","https://openalex.org/W2741131631","https://openalex.org/W2047683846","https://openalex.org/W2044902158","https://openalex.org/W2109912052","https://openalex.org/W1711527768"],"abstract_inverted_index":{"Inference":[0],"of":[1,52,73,127,164],"chemical":[2,84,95,131,154,169],"compounds":[3,132,155],"with":[4,158],"desired":[5,110],"properties":[6,170],"is":[7,67,97,185],"important":[8],"for":[9,33,86,113,148,152],"drug":[10],"design,":[11],"chemo-informatics,":[12],"and":[13,19,43,56,101,129,143,177],"bioinformatics,":[14],"to":[15,81,124],"which":[16],"various":[17],"algorithmic":[18],"machine":[20],"learning":[21],"techniques":[22],"have":[23,108],"been":[24,31,121],"applied.":[25],"Recently,":[26],"a":[27,77,82,94,109,145],"novel":[28],"method":[29,50,147,184],"has":[30,120],"proposed":[32,183],"this":[34,136],"inference":[35,150],"problem":[36,151],"using":[37,99,167],"both":[38],"artificial":[39],"neural":[40],"networks":[41],"(ANN)":[42],"mixed":[44],"integer":[45],"linear":[46],"programming":[47],"(MILP).":[48],"This":[49],"consists":[51],"the":[53,57,62,71,74,90,105,114,118,125,141,149,182,190],"training":[54,63],"phase":[55],"inverse":[58,91],"prediction":[59,92],"phase.":[60],"In":[61,89,135],"phase,":[64,93],"an":[65],"ANN":[66,75],"trained":[68,115],"so":[69,103,133],"that":[70,104,181],"output":[72,111],"takes":[76],"value":[78,112],"nearly":[79],"equal":[80],"given":[83],"property":[85],"each":[87],"sample.":[88],"structure":[96,106],"inferred":[98],"MILP":[100],"enumeration":[102],"can":[107],"ANN.":[116],"However,":[117],"framework":[119,142],"applied":[122],"only":[123],"case":[126],"acyclic":[128],"monocyclic":[130],"far.":[134],"paper,":[137],"we":[138],"significantly":[139],"extend":[140],"present":[144],"new":[146],"rank-2":[153],"(chemical":[156],"graphs":[157],"cycle":[159],"index":[160],"2).":[161],"The":[162],"results":[163],"computational":[165],"experiments":[166],"such":[168],"as":[171],"octanol/water":[172],"partition":[173],"coefficient,":[174],"melting":[175],"point,":[176],"boiling":[178],"point":[179],"suggest":[180],"much":[186],"more":[187],"useful":[188],"than":[189],"previous":[191],"method.":[192]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":4}],"updated_date":"2026-08-04T08:18:43.703281","created_date":"2025-10-10T00:00:00"}
