{"id":"https://openalex.org/W2803554436","doi":"https://doi.org/10.3390/a11050073","title":"The NIRS Brain AnalyzIR Toolbox","display_name":"The NIRS Brain AnalyzIR Toolbox","publication_year":2018,"publication_date":"2018-05-16","ids":{"openalex":"https://openalex.org/W2803554436","doi":"https://doi.org/10.3390/a11050073","mag":"2803554436","pmid":"https://pubmed.ncbi.nlm.nih.gov/38957522"},"language":"en","primary_location":{"id":"doi:10.3390/a11050073","is_oa":true,"landing_page_url":"https://doi.org/10.3390/a11050073","pdf_url":"https://www.mdpi.com/1999-4893/11/5/73/pdf?version=1526466224","source":{"id":"https://openalex.org/S190629608","display_name":"Algorithms","issn_l":"1999-4893","issn":["1999-4893"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/1999-4893/11/5/73/pdf?version=1526466224","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061523874","display_name":"Hendrik Santosa","orcid":"https://orcid.org/0000-0003-0123-0169"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hendrik Santosa","raw_affiliation_strings":["Department of Radiology, University of Pittsburgh, Pittsburgh, PA 15213-2536, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Radiology, University of Pittsburgh, Pittsburgh, PA 15213-2536, USA","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087394836","display_name":"Xuetong Zhai","orcid":"https://orcid.org/0000-0002-2618-5686"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xuetong Zhai","raw_affiliation_strings":["Department of Bioengineering, University of Pittsburgh, Pittsburgh, PA 15213-2536, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, University of Pittsburgh, Pittsburgh, PA 15213-2536, USA","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006299313","display_name":"Frank A. Fishburn","orcid":"https://orcid.org/0000-0002-1227-2834"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Frank Fishburn","raw_affiliation_strings":["Department of Psychiatry, University of Pittsburgh, Pittsburgh, PA 15213-2536, USA"],"raw_orcid":"https://orcid.org/0000-0002-1227-2834","affiliations":[{"raw_affiliation_string":"Department of Psychiatry, University of Pittsburgh, Pittsburgh, PA 15213-2536, USA","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060536715","display_name":"Theodore J. Huppert","orcid":"https://orcid.org/0000-0001-8426-5759"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]},{"id":"https://openalex.org/I4210086114","display_name":"Center for the Neural Basis of Cognition","ror":"https://ror.org/00jfeg660","country_code":"US","type":"facility","lineage":["https://openalex.org/I170201317","https://openalex.org/I4210086114","https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Theodore Huppert","raw_affiliation_strings":["Departments of Radiology and Bioengineering, University of Pittsburgh, Clinical Science Translational Institute, and Center for the Neural Basis of Cognition, Pittsburgh, PA 15213-2536, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departments of Radiology and Bioengineering, University of Pittsburgh, Clinical Science Translational Institute, and Center for the Neural Basis of Cognition, Pittsburgh, PA 15213-2536, USA","institution_ids":["https://openalex.org/I4210086114","https://openalex.org/I170201317"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5060536715"],"corresponding_institution_ids":["https://openalex.org/I170201317","https://openalex.org/I4210086114"],"apc_list":{"value":1400,"currency":"CHF","value_usd":1515},"apc_paid":{"value":1400,"currency":"CHF","value_usd":1515},"fwci":22.5671,"has_fulltext":false,"cited_by_count":445,"citation_normalized_percentile":{"value":0.99674167,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"11","issue":"5","first_page":"73","last_page":"73"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10977","display_name":"Optical Imaging and Spectroscopy Techniques","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10977","display_name":"Optical Imaging and Spectroscopy Techniques","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11196","display_name":"Non-Invasive Vital Sign Monitoring","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11700","display_name":"Hemodynamic Monitoring and Therapy","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/2746","display_name":"Surgery"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/toolbox","display_name":"Toolbox","score":0.8095155954360962},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8045226335525513},{"id":"https://openalex.org/keywords/software-portability","display_name":"Software portability","score":0.7069030404090881},{"id":"https://openalex.org/keywords/functional-near-infrared-spectroscopy","display_name":"Functional near-infrared spectroscopy","score":0.6803991198539734},{"id":"https://openalex.org/keywords/neuroimaging","display_name":"Neuroimaging","score":0.5321109890937805},{"id":"https://openalex.org/keywords/flexibility","display_name":"Flexibility (engineering)","score":0.49696114659309387},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4859086573123932},{"id":"https://openalex.org/keywords/measure","display_name":"Measure (data warehouse)","score":0.4310843050479889},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.32629281282424927},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2636597752571106},{"id":"https://openalex.org/keywords/cognition","display_name":"Cognition","score":0.17995083332061768},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.08976039290428162},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.08926886320114136},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.0856938362121582},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.08535152673721313}],"concepts":[{"id":"https://openalex.org/C2777655017","wikidata":"https://www.wikidata.org/wiki/Q1501161","display_name":"Toolbox","level":2,"score":0.8095155954360962},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8045226335525513},{"id":"https://openalex.org/C63000827","wikidata":"https://www.wikidata.org/wiki/Q3080428","display_name":"Software portability","level":2,"score":0.7069030404090881},{"id":"https://openalex.org/C130796691","wikidata":"https://www.wikidata.org/wiki/Q750537","display_name":"Functional near-infrared spectroscopy","level":4,"score":0.6803991198539734},{"id":"https://openalex.org/C58693492","wikidata":"https://www.wikidata.org/wiki/Q551875","display_name":"Neuroimaging","level":2,"score":0.5321109890937805},{"id":"https://openalex.org/C2780598303","wikidata":"https://www.wikidata.org/wiki/Q65921492","display_name":"Flexibility (engineering)","level":2,"score":0.49696114659309387},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4859086573123932},{"id":"https://openalex.org/C2780009758","wikidata":"https://www.wikidata.org/wiki/Q6804172","display_name":"Measure (data warehouse)","level":2,"score":0.4310843050479889},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.32629281282424927},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2636597752571106},{"id":"https://openalex.org/C169900460","wikidata":"https://www.wikidata.org/wiki/Q2200417","display_name":"Cognition","level":2,"score":0.17995083332061768},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.08976039290428162},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.08926886320114136},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0856938362121582},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.08535152673721313},{"id":"https://openalex.org/C2781195155","wikidata":"https://www.wikidata.org/wiki/Q18680","display_name":"Prefrontal cortex","level":3,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.3390/a11050073","is_oa":true,"landing_page_url":"https://doi.org/10.3390/a11050073","pdf_url":"https://www.mdpi.com/1999-4893/11/5/73/pdf?version=1526466224","source":{"id":"https://openalex.org/S190629608","display_name":"Algorithms","issn_l":"1999-4893","issn":["1999-4893"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms","raw_type":"journal-article"},{"id":"pmid:38957522","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38957522","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms","raw_type":null},{"id":"pmh:oai:d-scholarship.pitt.edu:41086","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402372","display_name":"D-Scholarship@Pitt (University of Pittsburgh)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I170201317","host_organization_name":"University of Pittsburgh","host_organization_lineage":["https://openalex.org/I170201317"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"PeerReviewed"},{"id":"pmh:oai:doaj.org/article:f3e97c4fc440485aa15c73dc645dee99","is_oa":true,"landing_page_url":"https://doaj.org/article/f3e97c4fc440485aa15c73dc645dee99","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms, Vol 11, Iss 5, p 73 (2018)","raw_type":"article"},{"id":"pmh:oai:mdpi.com:/1999-4893/11/5/73/","is_oa":true,"landing_page_url":"https://dx.doi.org/10.3390/a11050073","pdf_url":null,"source":{"id":"https://openalex.org/S4306400947","display_name":"MDPI (MDPI AG)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210097602","host_organization_name":"Multidisciplinary Digital Publishing Institute (Switzerland)","host_organization_lineage":["https://openalex.org/I4210097602"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms; Volume 11; Issue 5; Pages: 73","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:11218834","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11218834","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3390/a11050073","is_oa":true,"landing_page_url":"https://doi.org/10.3390/a11050073","pdf_url":"https://www.mdpi.com/1999-4893/11/5/73/pdf?version=1526466224","source":{"id":"https://openalex.org/S190629608","display_name":"Algorithms","issn_l":"1999-4893","issn":["1999-4893"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2803554436.pdf","grobid_xml":"https://content.openalex.org/works/W2803554436.grobid-xml"},"referenced_works_count":64,"referenced_works":["https://openalex.org/W176201993","https://openalex.org/W977923474","https://openalex.org/W1906317191","https://openalex.org/W1963668068","https://openalex.org/W1967251791","https://openalex.org/W1969255018","https://openalex.org/W1970913835","https://openalex.org/W1973798922","https://openalex.org/W1973831461","https://openalex.org/W1977835859","https://openalex.org/W1987390005","https://openalex.org/W1992529560","https://openalex.org/W1994458472","https://openalex.org/W2002994039","https://openalex.org/W2003035294","https://openalex.org/W2003170314","https://openalex.org/W2004995977","https://openalex.org/W2005647891","https://openalex.org/W2007492138","https://openalex.org/W2011481459","https://openalex.org/W2013712141","https://openalex.org/W2024213667","https://openalex.org/W2025564775","https://openalex.org/W2027221078","https://openalex.org/W2029802912","https://openalex.org/W2033106066","https://openalex.org/W2033894760","https://openalex.org/W2034807503","https://openalex.org/W2039932743","https://openalex.org/W2041829367","https://openalex.org/W2058046532","https://openalex.org/W2071404056","https://openalex.org/W2081358425","https://openalex.org/W2081768526","https://openalex.org/W2092890379","https://openalex.org/W2097683070","https://openalex.org/W2107375341","https://openalex.org/W2110065044","https://openalex.org/W2124459709","https://openalex.org/W2127800791","https://openalex.org/W2133320039","https://openalex.org/W2139649098","https://openalex.org/W2151130155","https://openalex.org/W2151721316","https://openalex.org/W2157825442","https://openalex.org/W2158885582","https://openalex.org/W2167822639","https://openalex.org/W2168175751","https://openalex.org/W2168963208","https://openalex.org/W2169088065","https://openalex.org/W2169368984","https://openalex.org/W2169523701","https://openalex.org/W2171076208","https://openalex.org/W2271295020","https://openalex.org/W2292302374","https://openalex.org/W2332309863","https://openalex.org/W2397546789","https://openalex.org/W2492605684","https://openalex.org/W2581363690","https://openalex.org/W2613783326","https://openalex.org/W2761310417","https://openalex.org/W2761428011","https://openalex.org/W4230065791","https://openalex.org/W6607076485"],"related_works":["https://openalex.org/W107105315","https://openalex.org/W4367156293","https://openalex.org/W4205140848","https://openalex.org/W1584537303","https://openalex.org/W4388155270","https://openalex.org/W1872724644","https://openalex.org/W2750549761","https://openalex.org/W2068663075","https://openalex.org/W4376595809","https://openalex.org/W4285160148"],"abstract_inverted_index":{"Functional":[0],"near-infrared":[1],"spectroscopy":[2],"(fNIRS)":[3],"is":[4,185],"a":[5,36,82],"noninvasive":[6],"neuroimaging":[7],"technique":[8,31],"that":[9],"uses":[10],"low-levels":[11],"of":[12,39,52,81,91,102,109,115,127,181,199,203],"light":[13],"(650-900":[14],"nm)":[15],"to":[16,59,124],"measure":[17],"changes":[18],"in":[19,35,69,121],"cerebral":[20],"blood":[21],"volume":[22],"and":[23,41,50,71,74,84,111,163,165,170,213],"oxygenation.":[24],"Over":[25],"the":[26,78,89,99,103,105,112,125,147,177,188,195,200,204],"last":[27],"several":[28,95,198],"decades,":[29],"this":[30,53,128,137,143,182],"has":[32],"been":[33],"utilized":[34,120],"growing":[37,113],"number":[38],"functional":[40,63],"resting-state":[42],"brain":[43],"studies.":[44],"The":[45],"lower":[46],"operation":[47],"cost,":[48],"portability,":[49],"versatility":[51],"method":[54],"make":[55],"it":[56],"an":[57,153],"alternative":[58],"methods":[60,135],"such":[61],"as":[62,152],"magnetic":[64],"resonance":[65],"imaging":[66],"for":[67,75,136,158,197],"studies":[68,76,122],"pediatric":[70],"special":[72],"populations":[73],"without":[77],"confining":[79],"limitations":[80],"supine":[83],"motionless":[85],"acquisition":[86],"setup.":[87],"However,":[88],"analysis":[90,134,156],"fNIRS":[92,159],"data":[93,160],"poses":[94],"challenges":[96],"stemming":[97],"from":[98],"unique":[100,106],"physics":[101],"technique,":[104],"statistical":[107,172,207],"properties":[108],"data,":[110],"diversity":[114],"non-traditional":[116],"experimental":[117],"designs":[118],"being":[119],"due":[123],"flexibility":[126],"technology.":[129],"For":[130],"these":[131],"reasons,":[132],"specific":[133],"technology":[138],"must":[139],"be":[140],"developed.":[141],"In":[142],"paper,":[144],"we":[145,175],"introduce":[146],"NIRS":[148],"Brain":[149],"AnalyzIR":[150],"toolbox":[151,205],"open-source":[154],"Matlab-based":[155],"package":[157],"management,":[161],"pre-processing,":[162],"first-":[164],"second-level":[166],"(i.e.,":[167],"single":[168],"subject":[169],"group-level)":[171],"analysis.":[173],"Here,":[174],"describe":[176],"basic":[178],"architectural":[179],"format":[180],"toolbox,":[183],"which":[184],"based":[186,215],"on":[187],"object-oriented":[189],"programming":[190],"paradigm.":[191],"We":[192],"also":[193],"detail":[194],"algorithms":[196],"major":[201],"components":[202],"including":[206],"analysis,":[208],"probe":[209],"registration,":[210],"image":[211],"reconstruction,":[212],"region-of-interest":[214],"statistics.":[216]},"counts_by_year":[{"year":2026,"cited_by_count":15},{"year":2025,"cited_by_count":60},{"year":2024,"cited_by_count":68},{"year":2023,"cited_by_count":100},{"year":2022,"cited_by_count":80},{"year":2021,"cited_by_count":64},{"year":2020,"cited_by_count":41},{"year":2019,"cited_by_count":13},{"year":2018,"cited_by_count":4}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
