{"id":"https://openalex.org/W2568256205","doi":"https://doi.org/10.3390/a10010008","title":"Modeling Delayed Dynamics in Biological Regulatory Networks from Time Series Data","display_name":"Modeling Delayed Dynamics in Biological Regulatory Networks from Time Series Data","publication_year":2017,"publication_date":"2017-01-09","ids":{"openalex":"https://openalex.org/W2568256205","doi":"https://doi.org/10.3390/a10010008","mag":"2568256205"},"language":"en","primary_location":{"id":"doi:10.3390/a10010008","is_oa":true,"landing_page_url":"https://doi.org/10.3390/a10010008","pdf_url":"https://www.mdpi.com/1999-4893/10/1/8/pdf?version=1483956018","source":{"id":"https://openalex.org/S190629608","display_name":"Algorithms","issn_l":"1999-4893","issn":["1999-4893"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/1999-4893/10/1/8/pdf?version=1483956018","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5105659993","display_name":"Emna Ben Abdallah","orcid":"https://orcid.org/0000-0001-8207-2080"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I100445878","display_name":"\u00c9cole Centrale de Nantes","ror":"https://ror.org/03nh7d505","country_code":"FR","type":"education","lineage":["https://openalex.org/I100445878","https://openalex.org/I97188460"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Emna Ben Abdallah","raw_affiliation_strings":["IRCCyN UMR CNRS 6597 (Institut de Recherche en Communications et Cybern\u00e9tique de Nantes), \u00c9cole Centrale de Nantes, 1 rue de la No\u00eb, 44321 Nantes, France"],"affiliations":[{"raw_affiliation_string":"IRCCyN UMR CNRS 6597 (Institut de Recherche en Communications et Cybern\u00e9tique de Nantes), \u00c9cole Centrale de Nantes, 1 rue de la No\u00eb, 44321 Nantes, France","institution_ids":["https://openalex.org/I100445878","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5105511743","display_name":"Tony Ribeiro","orcid":"https://orcid.org/0000-0002-1793-2854"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I184597095","display_name":"National Institute of Informatics","ror":"https://ror.org/04ksd4g47","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1319490839","https://openalex.org/I184597095","https://openalex.org/I4210158934"]},{"id":"https://openalex.org/I100445878","display_name":"\u00c9cole Centrale de Nantes","ror":"https://ror.org/03nh7d505","country_code":"FR","type":"education","lineage":["https://openalex.org/I100445878","https://openalex.org/I97188460"]}],"countries":["FR","JP"],"is_corresponding":false,"raw_author_name":"Tony Ribeiro","raw_affiliation_strings":["IRCCyN UMR CNRS 6597 (Institut de Recherche en Communications et Cybern\u00e9tique de Nantes), \u00c9cole Centrale de Nantes, 1 rue de la No\u00eb, 44321 Nantes, France","NII - National Institute of Informatics (2-1-2 Hitotsubashi, Chiyoda-ku, Tokyo 101-8430 - Japan)"],"affiliations":[{"raw_affiliation_string":"IRCCyN UMR CNRS 6597 (Institut de Recherche en Communications et Cybern\u00e9tique de Nantes), \u00c9cole Centrale de Nantes, 1 rue de la No\u00eb, 44321 Nantes, France","institution_ids":["https://openalex.org/I100445878","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"NII - National Institute of Informatics (2-1-2 Hitotsubashi, Chiyoda-ku, Tokyo 101-8430 - Japan)","institution_ids":["https://openalex.org/I184597095"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023902666","display_name":"Morgan Magnin","orcid":"https://orcid.org/0000-0001-5443-0506"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I100445878","display_name":"\u00c9cole Centrale de Nantes","ror":"https://ror.org/03nh7d505","country_code":"FR","type":"education","lineage":["https://openalex.org/I100445878","https://openalex.org/I97188460"]},{"id":"https://openalex.org/I184597095","display_name":"National Institute of Informatics","ror":"https://ror.org/04ksd4g47","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1319490839","https://openalex.org/I184597095","https://openalex.org/I4210158934"]}],"countries":["FR","JP"],"is_corresponding":false,"raw_author_name":"Morgan Magnin","raw_affiliation_strings":["IRCCyN UMR CNRS 6597 (Institut de Recherche en Communications et Cybern\u00e9tique de Nantes), \u00c9cole Centrale de Nantes, 1 rue de la No\u00eb, 44321 Nantes, France","National Institute of Informatics, 2-1-2 Hitotsubashi, Chiyoda-ku, Tokyo 101-8430, Japan"],"affiliations":[{"raw_affiliation_string":"IRCCyN UMR CNRS 6597 (Institut de Recherche en Communications et Cybern\u00e9tique de Nantes), \u00c9cole Centrale de Nantes, 1 rue de la No\u00eb, 44321 Nantes, France","institution_ids":["https://openalex.org/I100445878","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"National Institute of Informatics, 2-1-2 Hitotsubashi, Chiyoda-ku, Tokyo 101-8430, Japan","institution_ids":["https://openalex.org/I184597095"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008022222","display_name":"Olivier Roux","orcid":"https://orcid.org/0000-0003-1563-7066"},"institutions":[{"id":"https://openalex.org/I100445878","display_name":"\u00c9cole Centrale de Nantes","ror":"https://ror.org/03nh7d505","country_code":"FR","type":"education","lineage":["https://openalex.org/I100445878","https://openalex.org/I97188460"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Olivier Roux","raw_affiliation_strings":["IRCCyN UMR CNRS 6597 (Institut de Recherche en Communications et Cybern\u00e9tique de Nantes), \u00c9cole Centrale de Nantes, 1 rue de la No\u00eb, 44321 Nantes, France"],"affiliations":[{"raw_affiliation_string":"IRCCyN UMR CNRS 6597 (Institut de Recherche en Communications et Cybern\u00e9tique de Nantes), \u00c9cole Centrale de Nantes, 1 rue de la No\u00eb, 44321 Nantes, France","institution_ids":["https://openalex.org/I100445878","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080458729","display_name":"Katsumi Inoue","orcid":"https://orcid.org/0000-0002-2717-9122"},"institutions":[{"id":"https://openalex.org/I184597095","display_name":"National Institute of Informatics","ror":"https://ror.org/04ksd4g47","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1319490839","https://openalex.org/I184597095","https://openalex.org/I4210158934"]},{"id":"https://openalex.org/I114531698","display_name":"Tokyo Institute of Technology","ror":"https://ror.org/0112mx960","country_code":"JP","type":"education","lineage":["https://openalex.org/I114531698"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Katsumi Inoue","raw_affiliation_strings":["Department of Computer Science, Tokyo Institute of Technology, 2-12-1 Oookayama, Meguro-ku, Tokyo 152-8552, Japan","National Institute of Informatics, 2-1-2 Hitotsubashi, Chiyoda-ku, Tokyo 101-8430, Japan","NII - National Institute of Informatics (2-1-2 Hitotsubashi, Chiyoda-ku, Tokyo 101-8430 - Japan)"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Tokyo Institute of Technology, 2-12-1 Oookayama, Meguro-ku, Tokyo 152-8552, Japan","institution_ids":["https://openalex.org/I114531698"]},{"raw_affiliation_string":"National Institute of Informatics, 2-1-2 Hitotsubashi, Chiyoda-ku, Tokyo 101-8430, Japan","institution_ids":["https://openalex.org/I184597095"]},{"raw_affiliation_string":"NII - National Institute of Informatics (2-1-2 Hitotsubashi, Chiyoda-ku, Tokyo 101-8430 - Japan)","institution_ids":["https://openalex.org/I184597095"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5105659993"],"corresponding_institution_ids":["https://openalex.org/I100445878","https://openalex.org/I1294671590"],"apc_list":{"value":1400,"currency":"CHF","value_usd":1515},"apc_paid":{"value":1400,"currency":"CHF","value_usd":1515},"fwci":0.2238,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.54379827,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"10","issue":"1","first_page":"8","last_page":"8"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8083274364471436},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.6428328156471252},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.626676082611084},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6154508590698242},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.5128822326660156},{"id":"https://openalex.org/keywords/series","display_name":"Series (stratigraphy)","score":0.46686863899230957},{"id":"https://openalex.org/keywords/time-series","display_name":"Time series","score":0.44669175148010254},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.43546515703201294},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4041094183921814},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.40338003635406494},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.331493079662323},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.15483543276786804},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.12080305814743042}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8083274364471436},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.6428328156471252},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.626676082611084},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6154508590698242},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.5128822326660156},{"id":"https://openalex.org/C143724316","wikidata":"https://www.wikidata.org/wiki/Q312468","display_name":"Series (stratigraphy)","level":2,"score":0.46686863899230957},{"id":"https://openalex.org/C151406439","wikidata":"https://www.wikidata.org/wiki/Q186588","display_name":"Time series","level":2,"score":0.44669175148010254},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.43546515703201294},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4041094183921814},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.40338003635406494},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.331493079662323},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.15483543276786804},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.12080305814743042},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.3390/a10010008","is_oa":true,"landing_page_url":"https://doi.org/10.3390/a10010008","pdf_url":"https://www.mdpi.com/1999-4893/10/1/8/pdf?version=1483956018","source":{"id":"https://openalex.org/S190629608","display_name":"Algorithms","issn_l":"1999-4893","issn":["1999-4893"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms","raw_type":"journal-article"},{"id":"pmh:oai:HAL:hal-01721287v1","is_oa":true,"landing_page_url":"https://hal.science/hal-01721287","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms, 2017, 10 (4), &#x27E8;10.3390/a10010008&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:doaj.org/article:d325fb9af5f448ce8b3b6cb429191574","is_oa":true,"landing_page_url":"https://doaj.org/article/d325fb9af5f448ce8b3b6cb429191574","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Algorithms, Vol 10, Iss 1, p 8 (2017)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3390/a10010008","is_oa":true,"landing_page_url":"https://doi.org/10.3390/a10010008","pdf_url":"https://www.mdpi.com/1999-4893/10/1/8/pdf?version=1483956018","source":{"id":"https://openalex.org/S190629608","display_name":"Algorithms","issn_l":"1999-4893","issn":["1999-4893"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Algorithms","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2568256205.pdf","grobid_xml":"https://content.openalex.org/works/W2568256205.grobid-xml"},"referenced_works_count":53,"referenced_works":["https://openalex.org/W7020694","https://openalex.org/W63598792","https://openalex.org/W130848971","https://openalex.org/W191900033","https://openalex.org/W1251130462","https://openalex.org/W1553971664","https://openalex.org/W1569566007","https://openalex.org/W1606891084","https://openalex.org/W1672891595","https://openalex.org/W1901760289","https://openalex.org/W1967547048","https://openalex.org/W1975954590","https://openalex.org/W1983965569","https://openalex.org/W1987945344","https://openalex.org/W1989284002","https://openalex.org/W1995008770","https://openalex.org/W1999515598","https://openalex.org/W2006808734","https://openalex.org/W2018238833","https://openalex.org/W2022624450","https://openalex.org/W2023292217","https://openalex.org/W2028949763","https://openalex.org/W2030124482","https://openalex.org/W2040575507","https://openalex.org/W2079958696","https://openalex.org/W2081930221","https://openalex.org/W2108579152","https://openalex.org/W2113256684","https://openalex.org/W2114060717","https://openalex.org/W2120890012","https://openalex.org/W2127581291","https://openalex.org/W2130416225","https://openalex.org/W2135593303","https://openalex.org/W2139997707","https://openalex.org/W2167334954","https://openalex.org/W2169779897","https://openalex.org/W2191825358","https://openalex.org/W2213556458","https://openalex.org/W2252985226","https://openalex.org/W2280966365","https://openalex.org/W2320234496","https://openalex.org/W2518532112","https://openalex.org/W2566707163","https://openalex.org/W2578895614","https://openalex.org/W2952134500","https://openalex.org/W2952424915","https://openalex.org/W3104508466","https://openalex.org/W6627997885","https://openalex.org/W6637298476","https://openalex.org/W6644400803","https://openalex.org/W6650334198","https://openalex.org/W6731119483","https://openalex.org/W6732635222"],"related_works":["https://openalex.org/W2155492529","https://openalex.org/W4252504573","https://openalex.org/W4385510321","https://openalex.org/W15348386","https://openalex.org/W2314128295","https://openalex.org/W2622688551","https://openalex.org/W1550175370","https://openalex.org/W2119012848","https://openalex.org/W1990205660","https://openalex.org/W4287026692"],"abstract_inverted_index":{"Background:":[0],"The":[1,87,105],"modeling":[2,182],"of":[3,19,26,78,107,116,123,135,150,180],"Biological":[4],"Regulatory":[5],"Networks":[6],"(BRNs)":[7],"relies":[8],"on":[9,55,155],"background":[10],"knowledge,":[11],"deriving":[12],"either":[13],"from":[14],"literature":[15],"and/or":[16],"the":[17,24,79,101,114,117,120,128,133,136,143,148,159,174,177],"analysis":[18],"biological":[20,85,157],"observations.":[21],"However,":[22],"with":[23,100],"development":[25],"high-throughput":[27],"data,":[28],"there":[29],"is":[30,45,90,110],"a":[31,48,68,75,93],"growing":[32],"need":[33],"for":[34,71,84],"methods":[35],"that":[36,140],"automatically":[37],"generate":[38],"admissible":[39],"models.":[40],"Methods:":[41],"Our":[42],"research":[43],"aim":[44],"to":[46,51,91,142,172],"provide":[47],"logical":[49],"approach":[50,154],"infer":[52],"BRNs":[53],"based":[54],"given":[56],"time":[57,125],"series":[58],"data":[59],"and":[60,131,162,176],"known":[61],"influences":[62],"among":[63],"genes.":[64],"Results:":[65],"We":[66,146],"propose":[67],"new":[69],"methodology":[70],"models":[72],"expressed":[73],"through":[74],"timed":[76],"extension":[77],"automata":[80],"networks":[81],"(well":[82],"suited":[83],"systems).":[86],"main":[88],"purpose":[89],"have":[92],"resulting":[94],"network":[95],"as":[96,98],"consistent":[97],"possible":[99],"observed":[102],"datasets.":[103],"Conclusion:":[104],"originality":[106],"our":[108,181],"work":[109],"three-fold:":[111],"(i)":[112],"identifying":[113],"sign":[115],"interaction;":[118],"(ii)":[119],"direct":[121],"integration":[122],"quantitative":[124],"delays":[126],"in":[127,170],"learning":[129],"approach;":[130],"(iii)":[132],"identification":[134],"qualitative":[137],"discrete":[138],"levels":[139],"lead":[141],"systems\u2019":[144],"dynamics.":[145],"show":[147],"benefits":[149],"such":[151],"an":[152],"automatic":[153],"dynamical":[156],"models,":[158],"DREAM4(in":[160],"silico)":[161],"DREAM8":[163],"(breast":[164],"cancer)":[165],"datasets,":[166],"popular":[167],"reverse-engineering":[168],"challenges,":[169],"order":[171],"discuss":[173],"precision":[175],"computational":[178],"performances":[179],"method.":[183]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
