{"id":"https://openalex.org/W4415457349","doi":"https://doi.org/10.3389/fbinf.2025.1666716","title":"Drug repositioning pipeline integrating community analysis in drug-drug similarity networks and automated ATC community labeling to foster molecular docking analysis","display_name":"Drug repositioning pipeline integrating community analysis in drug-drug similarity networks and automated ATC community labeling to foster molecular docking analysis","publication_year":2025,"publication_date":"2025-10-23","ids":{"openalex":"https://openalex.org/W4415457349","doi":"https://doi.org/10.3389/fbinf.2025.1666716","pmid":"https://pubmed.ncbi.nlm.nih.gov/41210919"},"language":"en","primary_location":{"id":"doi:10.3389/fbinf.2025.1666716","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2025.1666716","pdf_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1666716/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1666716/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5094021757","display_name":"Daiana Colib\u0103\u015fanu","orcid":"https://orcid.org/0009-0003-2449-3452"},"institutions":[{"id":"https://openalex.org/I4210088791","display_name":"Victor Babe\u0219 University of Medicine and Pharmacy Timi\u0219oara","ror":"https://ror.org/00afdp487","country_code":"RO","type":"education","lineage":["https://openalex.org/I4210088791"]}],"countries":["RO"],"is_corresponding":false,"raw_author_name":"Daiana Colib\u0103\u015fanu","raw_affiliation_strings":["Center for Drug Data Analysis, Cheminformatics, and the Internet of Medical Things, Victor Babe\u015f University of Medicine and Pharmacy Timi\u015foara, Timi\u015foara, Romania","Department II-Pharmaceutical Chemistry, Victor Babe\u015f University of Medicine and Pharmacy Timi\u015foara, Timi\u015foara, Romania"],"affiliations":[{"raw_affiliation_string":"Center for Drug Data Analysis, Cheminformatics, and the Internet of Medical Things, Victor Babe\u015f University of Medicine and Pharmacy Timi\u015foara, Timi\u015foara, Romania","institution_ids":["https://openalex.org/I4210088791"]},{"raw_affiliation_string":"Department II-Pharmaceutical Chemistry, Victor Babe\u015f University of Medicine and Pharmacy Timi\u015foara, Timi\u015foara, Romania","institution_ids":["https://openalex.org/I4210088791"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049909066","display_name":"Vlad Groza","orcid":"https://orcid.org/0000-0003-2704-8541"},"institutions":[{"id":"https://openalex.org/I3122695212","display_name":"Polytechnic University of Timi\u015foara","ror":"https://ror.org/02v91gy68","country_code":"RO","type":"education","lineage":["https://openalex.org/I3122695212"]}],"countries":["RO"],"is_corresponding":false,"raw_author_name":"Vlad Groza","raw_affiliation_strings":["Department of Computer and Information Technology, Politehnica University Timi\u015foara, Timi\u015foara, Romania"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Technology, Politehnica University Timi\u015foara, Timi\u015foara, Romania","institution_ids":["https://openalex.org/I3122695212"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055700231","display_name":"Maria Antonietta Occhiuzzi","orcid":"https://orcid.org/0000-0003-0098-0347"},"institutions":[{"id":"https://openalex.org/I45204951","display_name":"University of Calabria","ror":"https://ror.org/02rc97e94","country_code":"IT","type":"education","lineage":["https://openalex.org/I45204951"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Maria Antonietta Occhiuzzi","raw_affiliation_strings":["Department of Pharmacy, Health and Nutritional Sciences, University of Calabria, Rende, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Pharmacy, Health and Nutritional Sciences, University of Calabria, Rende, Italy","institution_ids":["https://openalex.org/I45204951"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042076209","display_name":"Fedora Grande","orcid":"https://orcid.org/0000-0002-6154-4330"},"institutions":[{"id":"https://openalex.org/I45204951","display_name":"University of Calabria","ror":"https://ror.org/02rc97e94","country_code":"IT","type":"education","lineage":["https://openalex.org/I45204951"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Fedora Grande","raw_affiliation_strings":["Department of Pharmacy, Health and Nutritional Sciences, University of Calabria, Rende, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Pharmacy, Health and Nutritional Sciences, University of Calabria, Rende, Italy","institution_ids":["https://openalex.org/I45204951"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061592063","display_name":"Mihai Udrescu","orcid":"https://orcid.org/0000-0002-7607-9240"},"institutions":[{"id":"https://openalex.org/I3122695212","display_name":"Polytechnic University of Timi\u015foara","ror":"https://ror.org/02v91gy68","country_code":"RO","type":"education","lineage":["https://openalex.org/I3122695212"]}],"countries":["RO"],"is_corresponding":true,"raw_author_name":"Mihai Udrescu","raw_affiliation_strings":["Department of Computer and Information Technology, Politehnica University Timi\u015foara, Timi\u015foara, Romania"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Technology, Politehnica University Timi\u015foara, Timi\u015foara, Romania","institution_ids":["https://openalex.org/I3122695212"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061279445","display_name":"Lucre\u021bia Udrescu","orcid":"https://orcid.org/0000-0002-3084-6301"},"institutions":[{"id":"https://openalex.org/I4210088791","display_name":"Victor Babe\u0219 University of Medicine and Pharmacy Timi\u0219oara","ror":"https://ror.org/00afdp487","country_code":"RO","type":"education","lineage":["https://openalex.org/I4210088791"]}],"countries":["RO"],"is_corresponding":false,"raw_author_name":"Lucre\u021bia Udrescu","raw_affiliation_strings":["Center for Drug Data Analysis, Cheminformatics, and the Internet of Medical Things, Victor Babe\u015f University of Medicine and Pharmacy Timi\u015foara, Timi\u015foara, Romania","Department I-Drug Analysis, Victor Babe\u015f University of Medicine and Pharmacy Timi\u015foara, Timi\u015foara, Romania"],"affiliations":[{"raw_affiliation_string":"Center for Drug Data Analysis, Cheminformatics, and the Internet of Medical Things, Victor Babe\u015f University of Medicine and Pharmacy Timi\u015foara, Timi\u015foara, Romania","institution_ids":["https://openalex.org/I4210088791"]},{"raw_affiliation_string":"Department I-Drug Analysis, Victor Babe\u015f University of Medicine and Pharmacy Timi\u015foara, Timi\u015foara, Romania","institution_ids":["https://openalex.org/I4210088791"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5042076209","https://openalex.org/A5061592063"],"corresponding_institution_ids":["https://openalex.org/I3122695212","https://openalex.org/I45204951"],"apc_list":{"value":1900,"currency":"USD","value_usd":1900},"apc_paid":{"value":1900,"currency":"USD","value_usd":1900},"fwci":1.5687,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.8824602,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"5","issue":null,"first_page":"1666716","last_page":"1666716"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10375","display_name":"Pharmacogenetics and Drug Metabolism","score":0.9930999875068665,"subfield":{"id":"https://openalex.org/subfields/3004","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10274","display_name":"Synthesis and biological activity","score":0.9793999791145325,"subfield":{"id":"https://openalex.org/subfields/1605","display_name":"Organic Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.7028999924659729},{"id":"https://openalex.org/keywords/drug-repositioning","display_name":"Drug repositioning","score":0.545799970626831},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.4620000123977661},{"id":"https://openalex.org/keywords/network-analysis","display_name":"Network analysis","score":0.40549999475479126},{"id":"https://openalex.org/keywords/similitude","display_name":"Similitude","score":0.2784999907016754}],"concepts":[{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.7028999924659729},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5740000009536743},{"id":"https://openalex.org/C103637391","wikidata":"https://www.wikidata.org/wiki/Q5308921","display_name":"Drug repositioning","level":3,"score":0.545799970626831},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.486299991607666},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.4620000123977661},{"id":"https://openalex.org/C32946077","wikidata":"https://www.wikidata.org/wiki/Q618079","display_name":"Network analysis","level":2,"score":0.40549999475479126},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3952000141143799},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.34779998660087585},{"id":"https://openalex.org/C143271835","wikidata":"https://www.wikidata.org/wiki/Q254515","display_name":"Similitude","level":2,"score":0.2784999907016754},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.26649999618530273},{"id":"https://openalex.org/C3019060180","wikidata":"https://www.wikidata.org/wiki/Q184199","display_name":"Automated method","level":2,"score":0.26330000162124634},{"id":"https://openalex.org/C18762648","wikidata":"https://www.wikidata.org/wiki/Q42213","display_name":"Work (physics)","level":2,"score":0.25619998574256897}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3389/fbinf.2025.1666716","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2025.1666716","pdf_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1666716/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:41210919","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41210919","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:c1cf44470b8149969e89a9084ea1f01a","is_oa":true,"landing_page_url":"https://doaj.org/article/c1cf44470b8149969e89a9084ea1f01a","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Bioinformatics, Vol 5 (2025)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:11399906","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12589059","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3389/fbinf.2025.1666716","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2025.1666716","pdf_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1666716/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4415457349.pdf"},"referenced_works_count":73,"referenced_works":["https://openalex.org/W1707356941","https://openalex.org/W1985422568","https://openalex.org/W2025816743","https://openalex.org/W2028046413","https://openalex.org/W2038159110","https://openalex.org/W2057370954","https://openalex.org/W2086147585","https://openalex.org/W2099582869","https://openalex.org/W2114850508","https://openalex.org/W2123832119","https://openalex.org/W2134967712","https://openalex.org/W2150239699","https://openalex.org/W2163086529","https://openalex.org/W2255438499","https://openalex.org/W2286919735","https://openalex.org/W2435994898","https://openalex.org/W2460719280","https://openalex.org/W2517185844","https://openalex.org/W2560024871","https://openalex.org/W2571078282","https://openalex.org/W2753953057","https://openalex.org/W2767891136","https://openalex.org/W2791299132","https://openalex.org/W2896002881","https://openalex.org/W2905174775","https://openalex.org/W2907265097","https://openalex.org/W2951512731","https://openalex.org/W2983166786","https://openalex.org/W2998322952","https://openalex.org/W3005925976","https://openalex.org/W3017154096","https://openalex.org/W3018719581","https://openalex.org/W3032922645","https://openalex.org/W3033000020","https://openalex.org/W3039977092","https://openalex.org/W3044334750","https://openalex.org/W3045080056","https://openalex.org/W3047042729","https://openalex.org/W3081336389","https://openalex.org/W3085126519","https://openalex.org/W3089408114","https://openalex.org/W3108856375","https://openalex.org/W3115114141","https://openalex.org/W3120049458","https://openalex.org/W3138130200","https://openalex.org/W3158868742","https://openalex.org/W3160377079","https://openalex.org/W3199952589","https://openalex.org/W3201539868","https://openalex.org/W3214187349","https://openalex.org/W4200515792","https://openalex.org/W4206784718","https://openalex.org/W4207048978","https://openalex.org/W4220901543","https://openalex.org/W4224139381","https://openalex.org/W4224236693","https://openalex.org/W4226022817","https://openalex.org/W4229440601","https://openalex.org/W4282976153","https://openalex.org/W4293219024","https://openalex.org/W4307171277","https://openalex.org/W4309403786","https://openalex.org/W4311503426","https://openalex.org/W4317477705","https://openalex.org/W4320730551","https://openalex.org/W4323653197","https://openalex.org/W4378515807","https://openalex.org/W4380051178","https://openalex.org/W4382877116","https://openalex.org/W4387729321","https://openalex.org/W4400723895","https://openalex.org/W4400902291","https://openalex.org/W4402101154"],"related_works":[],"abstract_inverted_index":{"Our":[0],"integrated":[1],"pipeline":[2],"effectively":[3],"integrates":[4],"network-based":[5],"community":[6],"analysis":[7],"and":[8,14,24,49],"automated":[9],"ATC":[10],"labeling":[11],"with":[12],"literature":[13],"docking":[15],"analysis,":[16],"narrowing":[17],"the":[18],"search":[19],"space":[20],"for":[21,33],"<i>in":[22],"silico</i>":[23],"experimental":[25],"follow-up.":[26],"The":[27],"chloramphenicol":[28],"example":[29],"illustrates":[30],"its":[31],"utility":[32],"uncovering":[34],"non-obvious":[35],"repositioning":[36],"opportunities.":[37],"Future":[38],"work":[39],"will":[40],"extend":[41],"similarity":[42],"definitions":[43],"(e.g.,":[44],"to":[45],"higher-order":[46],"network":[47],"motifs)":[48],"incorporate":[50],"wet-lab":[51],"validation":[52],"of":[53],"top":[54],"candidates.":[55]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-24T00:00:00"}
