{"id":"https://openalex.org/W4411454336","doi":"https://doi.org/10.3389/fbinf.2025.1641083","title":"Editorial: Expert opinions in genomic analysis","display_name":"Editorial: Expert opinions in genomic analysis","publication_year":2025,"publication_date":"2025-06-19","ids":{"openalex":"https://openalex.org/W4411454336","doi":"https://doi.org/10.3389/fbinf.2025.1641083","pmid":"https://pubmed.ncbi.nlm.nih.gov/40611979"},"language":"en","primary_location":{"id":"doi:10.3389/fbinf.2025.1641083","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2025.1641083","pdf_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1641083/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"type":"editorial","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1641083/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060418877","display_name":"Jo\u00e3o Carlos Set\u00fabal","orcid":"https://orcid.org/0000-0001-9174-2816"},"institutions":[{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Jo\u00e3o C. Setubal","raw_affiliation_strings":["Department of Biochemistry, Institute of Chemistry, University of S\u00e3o Paulo, S\u00e3o Paulo, Brazil"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, Institute of Chemistry, University of S\u00e3o Paulo, S\u00e3o Paulo, Brazil","institution_ids":["https://openalex.org/I17974374"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030607460","display_name":"Alberto Paccanaro","orcid":"https://orcid.org/0000-0001-8059-1346"},"institutions":[{"id":"https://openalex.org/I44202434","display_name":"Funda\u00e7\u00e3o Getulio Vargas","ror":"https://ror.org/01evzkn27","country_code":"BR","type":"education","lineage":["https://openalex.org/I44202434"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Alberto Paccanaro","raw_affiliation_strings":["School of Applied Mathematics (EMAp), Fundacao Getulio Vargas, Rio de Janeiro, Brazil"],"affiliations":[{"raw_affiliation_string":"School of Applied Mathematics (EMAp), Fundacao Getulio Vargas, Rio de Janeiro, Brazil","institution_ids":["https://openalex.org/I44202434"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5060418877"],"corresponding_institution_ids":["https://openalex.org/I17974374"],"apc_list":{"value":1900,"currency":"USD","value_usd":1900},"apc_paid":{"value":1900,"currency":"USD","value_usd":1900},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.19300678,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"5","issue":null,"first_page":"1641083","last_page":"1641083"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.36340001225471497,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.36340001225471497,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10582","display_name":"Ethics in Clinical Research","score":0.34130001068115234,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.3239000141620636,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5178099870681763},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4331347942352295},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3787135183811188},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2814052700996399}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5178099870681763},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4331347942352295},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3787135183811188},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2814052700996399}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3389/fbinf.2025.1641083","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2025.1641083","pdf_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1641083/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40611979","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40611979","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:0681cdd4e84c4dbab8bdb2ca034195a9","is_oa":true,"landing_page_url":"https://doaj.org/article/0681cdd4e84c4dbab8bdb2ca034195a9","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Bioinformatics, Vol 5 (2025)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:12224187","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12224187","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Front Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3389/fbinf.2025.1641083","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2025.1641083","pdf_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1641083/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4411454336.pdf","grobid_xml":"https://content.openalex.org/works/W4411454336.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"The":[0,30,46,165],"issue":[1],"is":[2,15,98],"wrapped":[3],"up":[4,105],"with":[5,140,144],"two":[6],"papers":[7],"on":[8,109,169],"Standards":[9],"in":[10,136,194],"Genomics,":[11],"a":[12,99,121,182,186],"topic":[13],"that":[14,51,68,102,152],"becoming":[16],"increasingly":[17],"important,":[18],"as":[19,148],"the":[20,38,74,78,83,106,110,129,149],"number":[21],"of":[22,40,86,114,120,123,134,189],"genomic":[23,41],"and":[24,44,65,71,88,142,157,191],"metagenomic":[25],"datasets":[26],"continues":[27],"to":[28,76,81,171,180,185],"increase.":[29],"first,":[31],"by":[32,93],"Keenum":[33],"et":[34,95],"al.":[35,96],",":[36,97],"addresses":[37],"issues":[39],"data":[42,60,89,116,145,155],"reuse":[43,158],"reproducibility.":[45],"authors":[47,130,166],"provide":[48],"convincing":[49],"arguments":[50],"common":[52],"metadata":[53,137],"reporting,":[54],"clear":[55],"communication,":[56],"standardized":[57],"protocols,":[58],"improved":[59],"management":[61],"infrastructure,":[62],"ethical":[63],"guidelines,":[64],"collaborative":[66],"policies":[67],"prioritize":[69],"transparency":[70],"accessibility":[72],"are":[73],"keys":[75],"enable":[77],"scientific":[79],"community":[80],"address":[82],"double":[84],"challenge":[85],"reproducibility":[87],"reuse.The":[90],"second":[91],"paper,":[92],"Kelliher":[94],"perspective":[100],"piece":[101],"nicely":[103],"follows":[104],"previous":[107],"one":[108],"more":[111,124,159],"specific":[112],"theme":[113],"microbiome":[115,127,154],"reuse.":[117],"Using":[118],"results":[119],"survey":[122],"than":[125,161],"700":[126],"researchers,":[128],"have":[131],"identified":[132],"lack":[133],"standards":[135],"records,":[138],"challenges":[139],"bioinformatics,":[141],"problems":[143],"repository":[146],"submissions":[147],"main":[150],"reasons":[151],"make":[153],"sharing":[156],"difficult":[160],"they":[162],"should":[163],"be.":[164],"offer":[167],"recommendations":[168],"how":[170],"overcome":[172],"these":[173],"challenges.In":[174],"sum,":[175],"we":[176],"believe":[177],"this":[178],"collection":[179],"be":[181],"nice":[183],"contribution":[184],"small":[187],"sample":[188],"important":[190],"timely":[192],"topics":[193],"genome":[195],"analysis.":[196]},"counts_by_year":[],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
