{"id":"https://openalex.org/W4206446559","doi":"https://doi.org/10.3389/fbinf.2021.794547","title":"Extending Association Rule Mining to Microbiome Pattern Analysis: Tools and Guidelines to Support Real Applications","display_name":"Extending Association Rule Mining to Microbiome Pattern Analysis: Tools and Guidelines to Support Real Applications","publication_year":2022,"publication_date":"2022-01-10","ids":{"openalex":"https://openalex.org/W4206446559","doi":"https://doi.org/10.3389/fbinf.2021.794547","pmid":"https://pubmed.ncbi.nlm.nih.gov/36303759"},"language":"en","primary_location":{"id":"doi:10.3389/fbinf.2021.794547","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2021.794547","pdf_url":"https://www.frontiersin.org/articles/10.3389/fbinf.2021.794547/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.frontiersin.org/articles/10.3389/fbinf.2021.794547/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077954935","display_name":"Giulia Agostinetto","orcid":"https://orcid.org/0000-0003-0506-8816"},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Agostinetto Giulia","raw_affiliation_strings":["Department of Biotechnology and Biosciences, University of Milano-Bicocca, Milan, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology and Biosciences, University of Milano-Bicocca, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5106317517","display_name":"Sandionigi Anna","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sandionigi Anna","raw_affiliation_strings":["Quantia Consulting Srl, Milan, Italy"],"affiliations":[{"raw_affiliation_string":"Quantia Consulting Srl, Milan, Italy","institution_ids":[]}]},{"author_position":"middle","author":{"id":null,"display_name":"Bruno Antonia","orcid":null},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Bruno Antonia","raw_affiliation_strings":["Department of Biotechnology and Biosciences, University of Milano-Bicocca, Milan, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology and Biosciences, University of Milano-Bicocca, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Pescini Dario","orcid":null},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Pescini Dario","raw_affiliation_strings":["Department of Statistics and Quantitative Methods, University of Milano-Bicocca, Milan, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Statistics and Quantitative Methods, University of Milano-Bicocca, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5107311688","display_name":"Casiraghi Maurizio","orcid":null},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Casiraghi Maurizio","raw_affiliation_strings":["Department of Biotechnology and Biosciences, University of Milano-Bicocca, Milan, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology and Biosciences, University of Milano-Bicocca, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5077954935"],"corresponding_institution_ids":["https://openalex.org/I66752286"],"apc_list":{"value":1900,"currency":"USD","value_usd":1900},"apc_paid":{"value":2076,"currency":"EUR","value_usd":2238},"fwci":1.3581,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.79486822,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"1","issue":null,"first_page":"794547","last_page":"794547"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9904000163078308,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microbiome","display_name":"Microbiome","score":0.852276086807251},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6139994263648987},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.5298566222190857},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5113101005554199},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.46497583389282227},{"id":"https://openalex.org/keywords/human-microbiome-project","display_name":"Human Microbiome Project","score":0.43833738565444946},{"id":"https://openalex.org/keywords/spurious-relationship","display_name":"Spurious relationship","score":0.43583470582962036},{"id":"https://openalex.org/keywords/association-rule-learning","display_name":"Association rule learning","score":0.4203528165817261},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4033662676811218},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.33157023787498474},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.321053683757782},{"id":"https://openalex.org/keywords/human-microbiome","display_name":"Human microbiome","score":0.3175777494907379},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2917817234992981},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.269458532333374},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.1852598786354065}],"concepts":[{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.852276086807251},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6139994263648987},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.5298566222190857},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5113101005554199},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.46497583389282227},{"id":"https://openalex.org/C190944805","wikidata":"https://www.wikidata.org/wiki/Q3922751","display_name":"Human Microbiome Project","level":4,"score":0.43833738565444946},{"id":"https://openalex.org/C97256817","wikidata":"https://www.wikidata.org/wiki/Q1462316","display_name":"Spurious relationship","level":2,"score":0.43583470582962036},{"id":"https://openalex.org/C193524817","wikidata":"https://www.wikidata.org/wiki/Q386780","display_name":"Association rule learning","level":2,"score":0.4203528165817261},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4033662676811218},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.33157023787498474},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.321053683757782},{"id":"https://openalex.org/C91478284","wikidata":"https://www.wikidata.org/wiki/Q6623796","display_name":"Human microbiome","level":3,"score":0.3175777494907379},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2917817234992981},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.269458532333374},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.1852598786354065}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.3389/fbinf.2021.794547","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2021.794547","pdf_url":"https://www.frontiersin.org/articles/10.3389/fbinf.2021.794547/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36303759","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36303759","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in bioinformatics","raw_type":null},{"id":"pmh:oai:boa.unimib.it:10281/390927","is_oa":true,"landing_page_url":"http://hdl.handle.net/10281/390927","pdf_url":"https://boa.unimib.it/bitstream/10281/390927/1/Agostinetto-2022-fbinf-VoR.pdf","source":{"id":"https://openalex.org/S4306401259","display_name":"BOA (University of Milano-Bicocca)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I66752286","host_organization_name":"University of Milano-Bicocca","host_organization_lineage":["https://openalex.org/I66752286"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:d18e4453c9a847479295c60027a5fffd","is_oa":true,"landing_page_url":"https://doaj.org/article/d18e4453c9a847479295c60027a5fffd","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Bioinformatics, Vol 1 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9580939","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9580939","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Front Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3389/fbinf.2021.794547","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2021.794547","pdf_url":"https://www.frontiersin.org/articles/10.3389/fbinf.2021.794547/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4206446559.pdf","grobid_xml":"https://content.openalex.org/works/W4206446559.grobid-xml"},"referenced_works_count":78,"referenced_works":["https://openalex.org/W1532476473","https://openalex.org/W1553696291","https://openalex.org/W1563440782","https://openalex.org/W1901616594","https://openalex.org/W1978920477","https://openalex.org/W1996453240","https://openalex.org/W2001240895","https://openalex.org/W2011312755","https://openalex.org/W2013371150","https://openalex.org/W2044712133","https://openalex.org/W2065037729","https://openalex.org/W2066277072","https://openalex.org/W2067585755","https://openalex.org/W2072224705","https://openalex.org/W2074949233","https://openalex.org/W2097460814","https://openalex.org/W2100417212","https://openalex.org/W2104007350","https://openalex.org/W2105924489","https://openalex.org/W2107005225","https://openalex.org/W2115482638","https://openalex.org/W2131186249","https://openalex.org/W2133610185","https://openalex.org/W2135837034","https://openalex.org/W2143096356","https://openalex.org/W2156619206","https://openalex.org/W2157016731","https://openalex.org/W2160870047","https://openalex.org/W2163223408","https://openalex.org/W2164495402","https://openalex.org/W2166785535","https://openalex.org/W2277388844","https://openalex.org/W2280650020","https://openalex.org/W2342249984","https://openalex.org/W2342414537","https://openalex.org/W2346423776","https://openalex.org/W2347162546","https://openalex.org/W2401562335","https://openalex.org/W2406700003","https://openalex.org/W2424275162","https://openalex.org/W2464983111","https://openalex.org/W2473355215","https://openalex.org/W2558664061","https://openalex.org/W2592367925","https://openalex.org/W2769542288","https://openalex.org/W2771045365","https://openalex.org/W2799462250","https://openalex.org/W2803457956","https://openalex.org/W2892206041","https://openalex.org/W2924357470","https://openalex.org/W2938373257","https://openalex.org/W2943091811","https://openalex.org/W2955591694","https://openalex.org/W2963276645","https://openalex.org/W2968526921","https://openalex.org/W2971503162","https://openalex.org/W2984894304","https://openalex.org/W2998067850","https://openalex.org/W2998574808","https://openalex.org/W3006520397","https://openalex.org/W3015150373","https://openalex.org/W3021991773","https://openalex.org/W3033913804","https://openalex.org/W3035965352","https://openalex.org/W3036084659","https://openalex.org/W3046420150","https://openalex.org/W3099878876","https://openalex.org/W3106625866","https://openalex.org/W3108245685","https://openalex.org/W3122216490","https://openalex.org/W3162671321","https://openalex.org/W3167638709","https://openalex.org/W3209575515","https://openalex.org/W4229674866","https://openalex.org/W6633402183","https://openalex.org/W6650879877","https://openalex.org/W6683808525","https://openalex.org/W6703928569"],"related_works":["https://openalex.org/W1968369492","https://openalex.org/W2043102924","https://openalex.org/W2915830746","https://openalex.org/W2347219288","https://openalex.org/W2391004329","https://openalex.org/W2315403509","https://openalex.org/W4285794994","https://openalex.org/W2624135745","https://openalex.org/W2291217197","https://openalex.org/W1490053404"],"abstract_inverted_index":{"Boosted":[0],"by":[1],"the":[2,22,56,104,113,143,148,157,175,180,199,221,227,264],"exponential":[3],"growth":[4],"of":[5,18,24,58,77,89,108,115,145,150,177,182,201,223,268],"microbiome-based":[6],"studies,":[7,32],"analyzing":[8],"microbiome":[9,31,82,123,171,183,205,229,233,242],"patterns":[10,48,70],"is":[11,28],"now":[12],"a":[13,64,193,251],"hot-topic,":[14],"finding":[15],"different":[16],"fields":[17],"application.":[19],"In":[20,40],"particular,":[21],"use":[23,149,176,200],"machine":[25],"learning":[26,66],"techniques":[27],"increasing":[29],"in":[30,43,118,152,241],"providing":[33,132,231],"deep":[34],"insights":[35],"into":[36,112],"microbial":[37,47,116,153,254],"community":[38],"composition.":[39],"this":[41,72,245],"context,":[42],"order":[44],"to":[45,68,142,164,215,238],"investigate":[46],"from":[49,81,120],"16S":[50,121,169],"rRNA":[51,122,170],"metabarcoding":[52],"data,":[53,90],"we":[54,186,247],"explored":[55],"effectiveness":[57],"Association":[59],"Rule":[60],"Mining":[61],"(ARM)":[62],"technique,":[63,259],"supervised-machine":[65],"procedure,":[67],"extract":[69],"(in":[71],"work,":[73,246],"intended":[74],"as":[75,208],"groups":[76],"species":[78],"or":[79],"taxa)":[80],"data.":[83,172],"ARM":[84,126,166,178,202,224,240,258],"can":[85],"generate":[86],"huge":[87],"amounts":[88],"making":[91,260],"spurious":[92,217],"information":[93,218],"removal":[94],"and":[95,106,131,147,179,219,257,266],"visualizing":[96],"results":[97,138,222],"challenging.":[98],"Our":[99,137],"work":[100],"sheds":[101],"light":[102],"on":[103,127,168],"strengths":[105],"weaknesses":[107,267],"pattern":[109,154],"mining":[110,271],"strategy":[111],"study":[114],"patterns,":[117,184],"particular":[119],"datasets,":[124],"applying":[125],"real":[128],"case":[129],"studies":[130],"guidelines":[133],"for":[134],"future":[135],"usage.":[136],"highlighted":[139],"issues":[140],"related":[141],"type":[144],"input":[146],"metadata":[151],"extraction,":[155],"identifying":[156],"key":[158],"steps":[159],"that":[160,197,235],"must":[161],"be":[162],"considered":[163],"apply":[165],"consciously":[167],"To":[173],"promote":[174],"visualization":[181],"specifically,":[185],"developed":[187],"microFIM":[188,211],"(microbial":[189],"Frequent":[190],"Itemset":[191],"Mining),":[192],"versatile":[194],"Python":[195],"tool":[196],"facilitates":[198],"integrating":[203],"common":[204,228],"outputs,":[206,230],"such":[207],"taxa":[209],"tables.":[210],"implements":[212],"interest":[213],"measures":[214],"remove":[216],"merges":[220],"analysis":[225],"with":[226],"similar":[232],"strategies":[234],"help":[236],"scientists":[237],"integrate":[239],"applications.":[243],"With":[244],"aimed":[248],"at":[249],"creating":[250],"bridge":[252],"between":[253],"ecology":[255],"researchers":[256,261],"aware":[262],"about":[263],"strength":[265],"association":[269],"rule":[270],"approach.":[272]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2}],"updated_date":"2026-04-16T08:26:57.006410","created_date":"2025-10-10T00:00:00"}
