{"id":"https://openalex.org/W4415303128","doi":"https://doi.org/10.3389/frai.2025.1663877","title":"Liver cancer knowledge graph construction based on dynamic entity replacement and masking strategies RoBERTa-wwm-large-BiLSTM-CRF model with clinical Chinese EMRs","display_name":"Liver cancer knowledge graph construction based on dynamic entity replacement and masking strategies RoBERTa-wwm-large-BiLSTM-CRF model with clinical Chinese EMRs","publication_year":2025,"publication_date":"2025-10-17","ids":{"openalex":"https://openalex.org/W4415303128","doi":"https://doi.org/10.3389/frai.2025.1663877","pmid":"https://pubmed.ncbi.nlm.nih.gov/41180822"},"language":"en","primary_location":{"id":"doi:10.3389/frai.2025.1663877","is_oa":true,"landing_page_url":"https://doi.org/10.3389/frai.2025.1663877","pdf_url":"https://www.frontiersin.org/journals/artificial-intelligence/articles/10.3389/frai.2025.1663877/pdf","source":{"id":"https://openalex.org/S4210197006","display_name":"Frontiers in Artificial Intelligence","issn_l":"2624-8212","issn":["2624-8212"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Artificial Intelligence","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.frontiersin.org/journals/artificial-intelligence/articles/10.3389/frai.2025.1663877/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003860921","display_name":"Yichi Zhang","orcid":"https://orcid.org/0000-0002-2267-5442"},"institutions":[{"id":"https://openalex.org/I141962983","display_name":"Shanghai University of Engineering Science","ror":"https://ror.org/0557b9y08","country_code":"CN","type":"education","lineage":["https://openalex.org/I141962983"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yichi Zhang","raw_affiliation_strings":["School of Electronic and Electrical Engineering, Shanghai University of Engineering Science, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Electronic and Electrical Engineering, Shanghai University of Engineering Science, Shanghai, China","institution_ids":["https://openalex.org/I141962983"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085425510","display_name":"Xiaojun Hu","orcid":"https://orcid.org/0000-0001-7092-2535"},"institutions":[{"id":"https://openalex.org/I4210088873","display_name":"Third Affiliated Hospital of Southern Medical University","ror":"https://ror.org/0050r1b65","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210088873"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaojun Hu","raw_affiliation_strings":["The Department of Hepatobiliary Surgery, Southern Medical University Third Hospital, Guangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Department of Hepatobiliary Surgery, Southern Medical University Third Hospital, Guangzhou, China","institution_ids":["https://openalex.org/I4210088873"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109596707","display_name":"Hailing Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I141962983","display_name":"Shanghai University of Engineering Science","ror":"https://ror.org/0557b9y08","country_code":"CN","type":"education","lineage":["https://openalex.org/I141962983"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Hailing Wang","raw_affiliation_strings":["School of Electronic and Electrical Engineering, Shanghai University of Engineering Science, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Electronic and Electrical Engineering, Shanghai University of Engineering Science, Shanghai, China","institution_ids":["https://openalex.org/I141962983"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100390553","display_name":"Peng Liu","orcid":"https://orcid.org/0000-0002-1667-6617"},"institutions":[{"id":"https://openalex.org/I183519381","display_name":"Capital Medical University","ror":"https://ror.org/013xs5b60","country_code":"CN","type":"education","lineage":["https://openalex.org/I183519381"]},{"id":"https://openalex.org/I4210112448","display_name":"Beijing Anding Hospital","ror":"https://ror.org/021ky1s64","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210112448"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ke Liu","raw_affiliation_strings":["Beijing Anding Hospital, Capital Medical University, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Beijing Anding Hospital, Capital Medical University, Beijing, China","institution_ids":["https://openalex.org/I4210112448","https://openalex.org/I183519381"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104152071","display_name":"Yongbin Gao","orcid":null},"institutions":[{"id":"https://openalex.org/I141962983","display_name":"Shanghai University of Engineering Science","ror":"https://ror.org/0557b9y08","country_code":"CN","type":"education","lineage":["https://openalex.org/I141962983"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yongbin Gao","raw_affiliation_strings":["School of Electronic and Electrical Engineering, Shanghai University of Engineering Science, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Electronic and Electrical Engineering, Shanghai University of Engineering Science, Shanghai, China","institution_ids":["https://openalex.org/I141962983"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044794053","display_name":"Xiaoyan Jiang","orcid":"https://orcid.org/0000-0001-8620-6488"},"institutions":[{"id":"https://openalex.org/I141962983","display_name":"Shanghai University of Engineering Science","ror":"https://ror.org/0557b9y08","country_code":"CN","type":"education","lineage":["https://openalex.org/I141962983"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoyan Jiang","raw_affiliation_strings":["School of Electronic and Electrical Engineering, Shanghai University of Engineering Science, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Electronic and Electrical Engineering, Shanghai University of Engineering Science, Shanghai, China","institution_ids":["https://openalex.org/I141962983"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Yingfang Fan","orcid":null},"institutions":[{"id":"https://openalex.org/I4210088873","display_name":"Third Affiliated Hospital of Southern Medical University","ror":"https://ror.org/0050r1b65","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210088873"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yingfang Fan","raw_affiliation_strings":["The Department of Hepatobiliary Surgery, Southern Medical University Third Hospital, Guangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Department of Hepatobiliary Surgery, Southern Medical University Third Hospital, Guangzhou, China","institution_ids":["https://openalex.org/I4210088873"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055905608","display_name":"Zhijun Fang","orcid":"https://orcid.org/0000-0001-8563-5678"},"institutions":[{"id":"https://openalex.org/I181326427","display_name":"Donghua University","ror":"https://ror.org/035psfh38","country_code":"CN","type":"education","lineage":["https://openalex.org/I181326427"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhijun Fang","raw_affiliation_strings":["School of Computer Science and Technology, Donghua University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Donghua University, Shanghai, China","institution_ids":["https://openalex.org/I181326427"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5109596707"],"corresponding_institution_ids":["https://openalex.org/I141962983","https://openalex.org/I4210088873"],"apc_list":{"value":1150,"currency":"USD","value_usd":1150},"apc_paid":{"value":1150,"currency":"USD","value_usd":1150},"fwci":1.396,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.86499866,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"8","issue":null,"first_page":"1663877","last_page":"1663877"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.38940000534057617,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.38940000534057617,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.3192000091075897,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.08269999921321869,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/masking","display_name":"Masking (illustration)","score":0.6669999957084656},{"id":"https://openalex.org/keywords/liver-cancer","display_name":"Liver cancer","score":0.5281000137329102},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4512999951839447},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.31520000100135803},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.29649999737739563}],"concepts":[{"id":"https://openalex.org/C2777402240","wikidata":"https://www.wikidata.org/wiki/Q6783436","display_name":"Masking (illustration)","level":2,"score":0.6669999957084656},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5945000052452087},{"id":"https://openalex.org/C2776231280","wikidata":"https://www.wikidata.org/wiki/Q623031","display_name":"Liver cancer","level":3,"score":0.5281000137329102},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4512999951839447},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3824000060558319},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3596000075340271},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.35510000586509705},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3463999927043915},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.33730000257492065},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.31520000100135803},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.29649999737739563},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.2815999984741211},{"id":"https://openalex.org/C2779473830","wikidata":"https://www.wikidata.org/wiki/Q1540899","display_name":"MEDLINE","level":2,"score":0.2612000107765198},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.2605000138282776},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.2574000060558319},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.2515000104904175}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3389/frai.2025.1663877","is_oa":true,"landing_page_url":"https://doi.org/10.3389/frai.2025.1663877","pdf_url":"https://www.frontiersin.org/journals/artificial-intelligence/articles/10.3389/frai.2025.1663877/pdf","source":{"id":"https://openalex.org/S4210197006","display_name":"Frontiers in Artificial Intelligence","issn_l":"2624-8212","issn":["2624-8212"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Artificial Intelligence","raw_type":"journal-article"},{"id":"pmid:41180822","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41180822","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in artificial intelligence","raw_type":null},{"id":"pmh:oai:doaj.org/article:10f035269d6e40be8058f00e29b75c4e","is_oa":true,"landing_page_url":"https://doaj.org/article/10f035269d6e40be8058f00e29b75c4e","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Artificial Intelligence, Vol 8 (2025)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:11384766","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12575302","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3389/frai.2025.1663877","is_oa":true,"landing_page_url":"https://doi.org/10.3389/frai.2025.1663877","pdf_url":"https://www.frontiersin.org/journals/artificial-intelligence/articles/10.3389/frai.2025.1663877/pdf","source":{"id":"https://openalex.org/S4210197006","display_name":"Frontiers in Artificial Intelligence","issn_l":"2624-8212","issn":["2624-8212"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Artificial Intelligence","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320326228","display_name":"Southern Medical University","ror":"https://ror.org/01vjw4z39"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4415303128.pdf"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W128638292","https://openalex.org/W2006217757","https://openalex.org/W2015079391","https://openalex.org/W2117446654","https://openalex.org/W2131571251","https://openalex.org/W2159583324","https://openalex.org/W2250539671","https://openalex.org/W2330149175","https://openalex.org/W2769387903","https://openalex.org/W2787045460","https://openalex.org/W2885195348","https://openalex.org/W2896457183","https://openalex.org/W2949966747","https://openalex.org/W2962904552","https://openalex.org/W2965373594","https://openalex.org/W2968439331","https://openalex.org/W3002226419","https://openalex.org/W3004611733","https://openalex.org/W3012409376","https://openalex.org/W3088981549","https://openalex.org/W3109918486","https://openalex.org/W3111386522","https://openalex.org/W3115587447","https://openalex.org/W3156378390","https://openalex.org/W4206192903","https://openalex.org/W4378594033","https://openalex.org/W4385196942","https://openalex.org/W4389795042","https://openalex.org/W4393153123","https://openalex.org/W4393935425","https://openalex.org/W4398140833","https://openalex.org/W4400349471","https://openalex.org/W4403700413","https://openalex.org/W4404835224","https://openalex.org/W4404917089","https://openalex.org/W4405119756","https://openalex.org/W4405263172","https://openalex.org/W4406431707","https://openalex.org/W4412609352"],"related_works":[],"abstract_inverted_index":{"Introduction:":[0],"Liver":[1,93],"cancer":[2,89,154,239],"is":[3,57],"a":[4,52,68,80,111,168,190,205,233,263],"leading":[5],"cause":[6],"of":[7,172,192,195,201,227],"cancer-related":[8],"mortality":[9],"worldwide,":[10],"necessitating":[11],"advanced":[12],"tools":[13],"for":[14,23,64,214],"diagnosis":[15],"and":[16,115,133,144,159,197,217,235,280],"management.":[17],"Knowledge":[18,123],"graphs":[19],"(KGs)":[20],"are":[21,32,272],"crucial":[22],"advancing":[24],"smart":[25],"healthcare,":[26],"but":[27],"existing":[28,267],"liver":[29,65,88,153,238,268],"cancer-specific":[30,269],"KGs":[31,62],"mostly":[33,273],"derived":[34,274],"from":[35,91,136,250,275],"literature":[36,276],"or":[37,277],"public":[38,176,278],"databases,":[39],"lacking":[40],"integration":[41,282],"with":[42,189,283],"real-world":[43,257,284],"clinical":[44,73,137,258,285],"data":[45,121],"[e.g.,":[46],"Electronic":[47,95],"Medical":[48,96],"Records":[49,97],"(EMRs)],":[50],"creating":[51,67],"critical":[53,264],"gap.":[54],"Furthermore,":[55],"there":[56],"currently":[58],"no":[59],"publicly":[60],"available":[61],"specifically":[63],"cancer,":[66],"significant":[69],"gap":[70,265],"in":[71,231,266],"structured":[72],"knowledge":[74],"resources.":[75],"Methods:":[76],"This":[77],"study":[78,261],"proposes":[79],"novel":[81,242],"framework":[82,230],"to":[83,119,131,212],"construct":[84],"the":[85,128,139,145,175,180,184,225,228],"first":[86],"Chinese":[87],"KG":[90,155],"Real-World":[92],"Cancer":[94],"(RLC-EMRs).":[98],"A":[99],"new":[100],"named":[101],"entity":[102,248],"recognition":[103],"(NER)":[104],"model,":[105],"DERM-RoBERTa-wwm-large-BiLSTM-CRF":[106],"was":[107,125,209],"developed":[108,211],"that":[109],"uses":[110],"Dynamic":[112],"Entity":[113],"Replacement":[114],"Masking":[116],"(DERM)":[117],"strategy":[118],"address":[120],"scarcity.":[122],"fusion":[124],"performed":[126],"using":[127],"TF-IDF":[129],"algorithm":[130],"standardize":[132],"integrate":[134],"entities":[135,158],"records,":[138],"professional":[140],"medical":[141,252],"website":[142],"www.XYWY.com,":[143],"CCMT-2019":[146],"terminology":[147],"standard.":[148],"Results:":[149],"The":[150,163,222,241],"final":[151],"constructed":[152],"contained":[156],"46,364":[157],"296,655":[160],"semantic":[161],"relationships.":[162],"proposed":[164,229],"NER":[165,244],"model":[166,185,245],"achieved":[167],"state-of-the-art":[169],"F1":[170,199],"score":[171,200],"68.84%":[173],"on":[174],"CMeEE-v2":[177],"dataset.":[178],"On":[179],"proprietary":[181],"RLC-EMRs":[182],"dataset,":[183],"demonstrated":[186,224],"high":[187],"effectiveness":[188,226],"precision":[191],"93.23%,":[193],"recall":[194],"94.69%,":[196],"an":[198],"93.96%.":[202],"In":[203],"addition,":[204],"KG-based":[206],"retrieval":[207],"system":[208],"successfully":[210,255],"query":[213],"complications,":[215],"medications,":[216],"other":[218],"related":[219],"information.":[220,286],"Discussion:":[221],"findings":[223],"constructing":[232],"comprehensive":[234],"clinically":[236],"relevant":[237],"KG.":[240],"DERM-based":[243],"significantly":[246],"improved":[247],"extraction":[249],"complex":[251],"texts.":[253],"By":[254],"integrating":[256],"data,":[259],"this":[260],"addresses":[262],"KGs,":[270],"which":[271],"databases":[279],"lack":[281]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-18T00:00:00"}
