{"id":"https://openalex.org/W4413206322","doi":"https://doi.org/10.3389/frai.2025.1632344","title":"Enhancing AI microscopy for foodborne bacterial classification using adversarial domain adaptation to address optical and biological variability","display_name":"Enhancing AI microscopy for foodborne bacterial classification using adversarial domain adaptation to address optical and biological variability","publication_year":2025,"publication_date":"2025-08-12","ids":{"openalex":"https://openalex.org/W4413206322","doi":"https://doi.org/10.3389/frai.2025.1632344","pmid":"https://pubmed.ncbi.nlm.nih.gov/40873491"},"language":"en","primary_location":{"id":"doi:10.3389/frai.2025.1632344","is_oa":true,"landing_page_url":"https://doi.org/10.3389/frai.2025.1632344","pdf_url":"https://public-pages-files-2025.frontiersin.org/journals/artificial-intelligence/articles/10.3389/frai.2025.1632344/pdf","source":{"id":"https://openalex.org/S4210197006","display_name":"Frontiers in Artificial Intelligence","issn_l":"2624-8212","issn":["2624-8212"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Artificial Intelligence","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://public-pages-files-2025.frontiersin.org/journals/artificial-intelligence/articles/10.3389/frai.2025.1632344/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5105525065","display_name":"Siddhartha Bhattacharya","orcid":"https://orcid.org/0009-0006-3350-002X"},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Siddhartha Bhattacharya","raw_affiliation_strings":["Department of Biosystems and Agricultural Engineering, Michigan State University, East Lansing, MI, United States","Department of Computer Science and Engineering, Michigan State University, East Lansing, MI, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biosystems and Agricultural Engineering, Michigan State University, East Lansing, MI, United States","institution_ids":["https://openalex.org/I87216513"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, Michigan State University, East Lansing, MI, United States","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114338176","display_name":"Aarham Wasit","orcid":null},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aarham Wasit","raw_affiliation_strings":["Department of Biosystems and Agricultural Engineering, Michigan State University, East Lansing, MI, United States","Department of Computer Science and Engineering, Michigan State University, East Lansing, MI, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biosystems and Agricultural Engineering, Michigan State University, East Lansing, MI, United States","institution_ids":["https://openalex.org/I87216513"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, Michigan State University, East Lansing, MI, United States","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079120060","display_name":"J. Mason Earles","orcid":"https://orcid.org/0000-0002-8345-9671"},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J Mason Earles","raw_affiliation_strings":["Department of Biological and Agricultural Engineering, University of California, Davis, Davis, CA, United States","Department of Viticulture and Enology, University of California, Davis, Davis, CA, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological and Agricultural Engineering, University of California, Davis, Davis, CA, United States","institution_ids":["https://openalex.org/I84218800"]},{"raw_affiliation_string":"Department of Viticulture and Enology, University of California, Davis, Davis, CA, United States","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044093862","display_name":"Nitin Nitin","orcid":"https://orcid.org/0000-0003-4839-4566"},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nitin Nitin","raw_affiliation_strings":["Department of Biological and Agricultural Engineering, University of California, Davis, Davis, CA, United States","Department of Food Science and Technology, University of California, Davis, Davis, CA, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological and Agricultural Engineering, University of California, Davis, Davis, CA, United States","institution_ids":["https://openalex.org/I84218800"]},{"raw_affiliation_string":"Department of Food Science and Technology, University of California, Davis, Davis, CA, United States","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088786300","display_name":"Jiyoon Yi","orcid":"https://orcid.org/0000-0002-4323-3125"},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jiyoon Yi","raw_affiliation_strings":["Department of Biosystems and Agricultural Engineering, Michigan State University, East Lansing, MI, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biosystems and Agricultural Engineering, Michigan State University, East Lansing, MI, United States","institution_ids":["https://openalex.org/I87216513"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5088786300"],"corresponding_institution_ids":["https://openalex.org/I87216513"],"apc_list":{"value":1150,"currency":"USD","value_usd":1150},"apc_paid":{"value":1150,"currency":"USD","value_usd":1150},"fwci":4.9498,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.95487924,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":100},"biblio":{"volume":"8","issue":null,"first_page":"1632344","last_page":"1632344"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13114","display_name":"Image Processing Techniques and Applications","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/2214","display_name":"Media Technology"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13114","display_name":"Image Processing Techniques and Applications","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/2214","display_name":"Media Technology"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12167","display_name":"Bacterial Identification and Susceptibility Testing","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1308","display_name":"Clinical Biochemistry"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5791361331939697},{"id":"https://openalex.org/keywords/microscopy","display_name":"Microscopy","score":0.5713345408439636},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4940631687641144},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4433937668800354},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.37363430857658386},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3647088408470154},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.36036527156829834},{"id":"https://openalex.org/keywords/optics","display_name":"Optics","score":0.15961623191833496},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.14051160216331482}],"concepts":[{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5791361331939697},{"id":"https://openalex.org/C147080431","wikidata":"https://www.wikidata.org/wiki/Q1074953","display_name":"Microscopy","level":2,"score":0.5713345408439636},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4940631687641144},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4433937668800354},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37363430857658386},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3647088408470154},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.36036527156829834},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.15961623191833496},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.14051160216331482}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3389/frai.2025.1632344","is_oa":true,"landing_page_url":"https://doi.org/10.3389/frai.2025.1632344","pdf_url":"https://public-pages-files-2025.frontiersin.org/journals/artificial-intelligence/articles/10.3389/frai.2025.1632344/pdf","source":{"id":"https://openalex.org/S4210197006","display_name":"Frontiers in Artificial Intelligence","issn_l":"2624-8212","issn":["2624-8212"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Artificial Intelligence","raw_type":"journal-article"},{"id":"pmid:40873491","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40873491","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in artificial intelligence","raw_type":null},{"id":"pmh:oai:doaj.org/article:ace45c4187a746be9a3b1a3a3a814c62","is_oa":true,"landing_page_url":"https://doaj.org/article/ace45c4187a746be9a3b1a3a3a814c62","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Artificial Intelligence, Vol 8 (2025)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:11187198","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12378515","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3389/frai.2025.1632344","is_oa":true,"landing_page_url":"https://doi.org/10.3389/frai.2025.1632344","pdf_url":"https://public-pages-files-2025.frontiersin.org/journals/artificial-intelligence/articles/10.3389/frai.2025.1632344/pdf","source":{"id":"https://openalex.org/S4210197006","display_name":"Frontiers in Artificial Intelligence","issn_l":"2624-8212","issn":["2624-8212"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Artificial Intelligence","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/12","score":0.4399999976158142,"display_name":"Responsible consumption and production"}],"awards":[{"id":"https://openalex.org/G2958765513","display_name":null,"funder_award_id":"2020-67021-32855","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5620962805","display_name":null,"funder_award_id":"67021","funder_id":"https://openalex.org/F4320332299","funder_display_name":"National Institute of Food and Agriculture"},{"id":"https://openalex.org/G6460123801","display_name":null,"funder_award_id":"2020-67021-32855","funder_id":"https://openalex.org/F4320306114","funder_display_name":"U.S. Department of Agriculture"},{"id":"https://openalex.org/G6681255116","display_name":null,"funder_award_id":"2020-67021-32855","funder_id":"https://openalex.org/F4320332299","funder_display_name":"National Institute of Food and Agriculture"},{"id":"https://openalex.org/G7557340814","display_name":null,"funder_award_id":"2021-67021-34256","funder_id":"https://openalex.org/F4320332299","funder_display_name":"National Institute of Food and Agriculture"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306114","display_name":"U.S. Department of Agriculture","ror":"https://ror.org/01na82s61"},{"id":"https://openalex.org/F4320310016","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993"},{"id":"https://openalex.org/F4320332299","display_name":"National Institute of Food and Agriculture","ror":"https://ror.org/05qx3fv49"},{"id":"https://openalex.org/F4320332431","display_name":"College of Engineering, Michigan State University","ror":"https://ror.org/05hs6h993"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4413206322.pdf","grobid_xml":"https://content.openalex.org/works/W4413206322.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W1731081199","https://openalex.org/W2094695282","https://openalex.org/W2099540110","https://openalex.org/W2156163116","https://openalex.org/W2157444450","https://openalex.org/W2558162976","https://openalex.org/W2788768841","https://openalex.org/W2889985731","https://openalex.org/W2891975605","https://openalex.org/W2963240485","https://openalex.org/W3084031891","https://openalex.org/W3099319035","https://openalex.org/W3110340257","https://openalex.org/W3111140902","https://openalex.org/W3113432628","https://openalex.org/W3153752852","https://openalex.org/W3183885237","https://openalex.org/W4206628887","https://openalex.org/W4214772115","https://openalex.org/W4226212710","https://openalex.org/W4293811910","https://openalex.org/W4301409532","https://openalex.org/W4311935231","https://openalex.org/W4387776917","https://openalex.org/W4392170196","https://openalex.org/W4401366758","https://openalex.org/W4401430750","https://openalex.org/W4401751617","https://openalex.org/W4403075900","https://openalex.org/W4405183833","https://openalex.org/W6637618735","https://openalex.org/W6683161245","https://openalex.org/W6754770232","https://openalex.org/W6762718338","https://openalex.org/W6766263406","https://openalex.org/W6793164127"],"related_works":["https://openalex.org/W4211107619","https://openalex.org/W3028614290","https://openalex.org/W4293104760","https://openalex.org/W3188962172","https://openalex.org/W2772917594","https://openalex.org/W4312825515","https://openalex.org/W4306742369","https://openalex.org/W2001655186","https://openalex.org/W2033914206","https://openalex.org/W2042327336"],"abstract_inverted_index":{"\u2264":[0],"30)":[1],"and":[2,30,61,78,91],"test":[3],"datasets":[4],"of":[5,87],"60-90":[6],"images.":[7],"DANNs":[8],"improved":[9,47],"target":[10],"domain":[11,52],"classification":[12],"accuracy":[13,39,48],"by":[14,59],"up":[15],"to":[16,22,28,35,55,67,89],"54.5%":[17],"for":[18,25,32,81],"20":[19],"\u00d7":[20],"(34.4%":[21],"88.9%),":[23],"43.3%":[24],"20x-5h":[26],"(40.0%":[27],"83.3%),":[29],"31.7%":[31],"BF":[33,51],"(43.4%":[34],"73.3%),":[36],"with":[37],"minimal":[38],"loss":[40],"in":[41,49],"the":[42,50,64,85],"source":[43],"domain.":[44],"MDANNs":[45],"further":[46],"from":[53],"73.3%":[54],"76.7%.":[56],"Feature":[57],"visualizations":[58],"Grad-CAM":[60],"t-SNE":[62],"validated":[63],"model's":[65],"ability":[66],"learn":[68],"domain-invariant":[69],"features":[70],"across":[71],"conditions.":[72],"This":[73],"study":[74],"presents":[75],"a":[76],"scalable":[77],"adaptable":[79],"framework":[80],"bacterial":[82],"classification,":[83],"extending":[84],"utility":[86],"microscopy":[88],"decentralized":[90],"resource-limited":[92],"settings":[93],"where":[94],"imaging":[95],"variability":[96],"often":[97],"challenges":[98],"performance.":[99]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":1}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
