{"id":"https://openalex.org/W4402428437","doi":"https://doi.org/10.3389/frai.2025.1599412","title":"BioBricks.ai: a versioned data registry for life sciences data assets","display_name":"BioBricks.ai: a versioned data registry for life sciences data assets","publication_year":2025,"publication_date":"2025-08-13","ids":{"openalex":"https://openalex.org/W4402428437","doi":"https://doi.org/10.3389/frai.2025.1599412","pmid":"https://pubmed.ncbi.nlm.nih.gov/39253636"},"language":"en","primary_location":{"id":"doi:10.3389/frai.2025.1599412","is_oa":true,"landing_page_url":"https://doi.org/10.3389/frai.2025.1599412","pdf_url":"https://public-pages-files-2025.frontiersin.org/journals/artificial-intelligence/articles/10.3389/frai.2025.1599412/pdf","source":{"id":"https://openalex.org/S4210197006","display_name":"Frontiers in Artificial Intelligence","issn_l":"2624-8212","issn":["2624-8212"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Artificial Intelligence","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://public-pages-files-2025.frontiersin.org/journals/artificial-intelligence/articles/10.3389/frai.2025.1599412/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071334213","display_name":"Yifan Gao","orcid":"https://orcid.org/0000-0003-2781-6862"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yifan Gao","raw_affiliation_strings":["Center for Alternative to Animal Testing, Johns Hopkins University, Baltimore, MD, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Alternative to Animal Testing, Johns Hopkins University, Baltimore, MD, United States","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107124533","display_name":"Zakariyya Mughal","orcid":null},"institutions":[{"id":"https://openalex.org/I4210139130","display_name":"International Neuroethics Society","ror":"https://ror.org/04jj1kk85","country_code":"US","type":"other","lineage":["https://openalex.org/I4210139130"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zakariyya Mughal","raw_affiliation_strings":["Insilica, Bethesda, MD, United States","Insilica, Bethesda, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Insilica, Bethesda, MD, United States","institution_ids":["https://openalex.org/I4210139130"]},{"raw_affiliation_string":"Insilica, Bethesda, MD, USA","institution_ids":["https://openalex.org/I4210139130"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107124534","display_name":"Jose A. Jaramillo-Villegas","orcid":null},"institutions":[{"id":"https://openalex.org/I200183955","display_name":"Technological University of Pereira","ror":"https://ror.org/01d981710","country_code":"CO","type":"education","lineage":["https://openalex.org/I200183955"]},{"id":"https://openalex.org/I4210099336","display_name":"Menlo School","ror":"https://ror.org/01240pn49","country_code":"US","type":"education","lineage":["https://openalex.org/I4210099336"]}],"countries":["CO","US"],"is_corresponding":false,"raw_author_name":"Jose A. Jaramillo-Villegas","raw_affiliation_strings":["Facultad de Ingenier\u00edas, Universidad Tecnol\u00f3gica de Pereira, Pereira, Colombia","Laboratory for Research in Complex Systems, Menlo Park, CA, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Facultad de Ingenier\u00edas, Universidad Tecnol\u00f3gica de Pereira, Pereira, Colombia","institution_ids":["https://openalex.org/I200183955"]},{"raw_affiliation_string":"Laboratory for Research in Complex Systems, Menlo Park, CA, United States","institution_ids":["https://openalex.org/I4210099336"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046064910","display_name":"Marie Corradi","orcid":"https://orcid.org/0000-0001-8185-5913"},"institutions":[{"id":"https://openalex.org/I173063890","display_name":"University of Applied Sciences Utrecht","ror":"https://ror.org/028z9kw20","country_code":"NL","type":"education","lineage":["https://openalex.org/I173063890"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Marie Corradi","raw_affiliation_strings":["HU University of Applied Sciences Utrecht, Innovative Testing in Life Sciences and Chemistry, University of Applied Sciences Utrecht, Utrecht, Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"HU University of Applied Sciences Utrecht, Innovative Testing in Life Sciences and Chemistry, University of Applied Sciences Utrecht, Utrecht, Netherlands","institution_ids":["https://openalex.org/I173063890"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072248324","display_name":"Alexandre Borrel","orcid":"https://orcid.org/0000-0001-6499-4540"},"institutions":[{"id":"https://openalex.org/I1309191912","display_name":"Research Triangle Park Foundation","ror":"https://ror.org/03eqttr49","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1309191912"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alexandre Borrel","raw_affiliation_strings":["Inotiv, Research Triangle Park, NC, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Inotiv, Research Triangle Park, NC, United States","institution_ids":["https://openalex.org/I1309191912"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111322519","display_name":"Ben Lieberman","orcid":null},"institutions":[{"id":"https://openalex.org/I4210139130","display_name":"International Neuroethics Society","ror":"https://ror.org/04jj1kk85","country_code":"US","type":"other","lineage":["https://openalex.org/I4210139130"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ben Lieberman","raw_affiliation_strings":["Insilica, Bethesda, MD, United States","Insilica, Bethesda, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Insilica, Bethesda, MD, United States","institution_ids":["https://openalex.org/I4210139130"]},{"raw_affiliation_string":"Insilica, Bethesda, MD, USA","institution_ids":["https://openalex.org/I4210139130"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068896650","display_name":"Suliman Sharif","orcid":"https://orcid.org/0000-0002-1342-9258"},"institutions":[{"id":"https://openalex.org/I4210139130","display_name":"International Neuroethics Society","ror":"https://ror.org/04jj1kk85","country_code":"US","type":"other","lineage":["https://openalex.org/I4210139130"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Suliman Sharif","raw_affiliation_strings":["Insilica, Bethesda, MD, United States","Insilica, Bethesda, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Insilica, Bethesda, MD, United States","institution_ids":["https://openalex.org/I4210139130"]},{"raw_affiliation_string":"Insilica, Bethesda, MD, USA","institution_ids":["https://openalex.org/I4210139130"]}]},{"author_position":"middle","author":{"id":null,"display_name":"John Shaffer","orcid":null},"institutions":[{"id":"https://openalex.org/I4210139130","display_name":"International Neuroethics Society","ror":"https://ror.org/04jj1kk85","country_code":"US","type":"other","lineage":["https://openalex.org/I4210139130"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John Shaffer","raw_affiliation_strings":["Insilica, Bethesda, MD, United States","Insilica, Bethesda, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Insilica, Bethesda, MD, United States","institution_ids":["https://openalex.org/I4210139130"]},{"raw_affiliation_string":"Insilica, Bethesda, MD, USA","institution_ids":["https://openalex.org/I4210139130"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048781098","display_name":"Karamarie Fecho","orcid":"https://orcid.org/0000-0002-6704-9306"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]},{"id":"https://openalex.org/I4210135115","display_name":"Professional Solutions (United States)","ror":"https://ror.org/037e0dj26","country_code":"US","type":"company","lineage":["https://openalex.org/I4210135115"]},{"id":"https://openalex.org/I69048370","display_name":"Renaissance Computing Institute","ror":"https://ror.org/01s91ey96","country_code":"US","type":"education","lineage":["https://openalex.org/I137902535","https://openalex.org/I170897317","https://openalex.org/I69048370"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Karamarie Fecho","raw_affiliation_strings":["Copperline Professional Solutions, LLC, Pittsboro, NC, United States","Renaissance Computing Institute, University of North Carolina at Chapel Hill, Chapel Hill, NC, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Copperline Professional Solutions, LLC, Pittsboro, NC, United States","institution_ids":["https://openalex.org/I4210135115"]},{"raw_affiliation_string":"Renaissance Computing Institute, University of North Carolina at Chapel Hill, Chapel Hill, NC, United States","institution_ids":["https://openalex.org/I69048370","https://openalex.org/I114027177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076594482","display_name":"Ajay Chatrath","orcid":"https://orcid.org/0000-0003-1309-9612"},"institutions":[{"id":"https://openalex.org/I204465549","display_name":"Washington University in St. Louis","ror":"https://ror.org/01yc7t268","country_code":"US","type":"education","lineage":["https://openalex.org/I204465549"]},{"id":"https://openalex.org/I4210123851","display_name":"Hope Center for Neurological Disorders","ror":"https://ror.org/035nzyk88","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210123851"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ajay Chatrath","raw_affiliation_strings":["Department of Neurological Surgery, Washington University in Saint Louis, St. Louis, MO, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Neurological Surgery, Washington University in Saint Louis, St. Louis, MO, United States","institution_ids":["https://openalex.org/I204465549","https://openalex.org/I4210123851"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027460680","display_name":"Alexandra Maertens","orcid":"https://orcid.org/0000-0002-2077-2011"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alexandra Maertens","raw_affiliation_strings":["Center for Alternative to Animal Testing, Johns Hopkins University, Baltimore, MD, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Alternative to Animal Testing, Johns Hopkins University, Baltimore, MD, United States","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048858422","display_name":"Marc Teunis","orcid":"https://orcid.org/0000-0002-3496-6669"},"institutions":[{"id":"https://openalex.org/I173063890","display_name":"University of Applied Sciences Utrecht","ror":"https://ror.org/028z9kw20","country_code":"NL","type":"education","lineage":["https://openalex.org/I173063890"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Marc A. T. Teunis","raw_affiliation_strings":["HU University of Applied Sciences Utrecht, Innovative Testing in Life Sciences and Chemistry, University of Applied Sciences Utrecht, Utrecht, Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"HU University of Applied Sciences Utrecht, Innovative Testing in Life Sciences and Chemistry, University of Applied Sciences Utrecht, Utrecht, Netherlands","institution_ids":["https://openalex.org/I173063890"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084541486","display_name":"Nicole Kleinstreuer","orcid":"https://orcid.org/0000-0002-7914-3682"},"institutions":[{"id":"https://openalex.org/I1309191912","display_name":"Research Triangle Park Foundation","ror":"https://ror.org/03eqttr49","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1309191912"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nicole Kleinstreuer","raw_affiliation_strings":["NTP Interagency Center for the Evaluation of Alternative Methods, Research Triangle Park, NC, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NTP Interagency Center for the Evaluation of Alternative Methods, Research Triangle Park, NC, United States","institution_ids":["https://openalex.org/I1309191912"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091124551","display_name":"Thomas H\u00e4rtung","orcid":"https://orcid.org/0000-0003-1359-7689"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I189712700","display_name":"University of Konstanz","ror":"https://ror.org/0546hnb39","country_code":"DE","type":"education","lineage":["https://openalex.org/I189712700"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Thomas Hartung","raw_affiliation_strings":["Center for Alternative to Animal Testing, Johns Hopkins University, Baltimore, MD, United States","Department of Biology, University of Konstanz, Konstanz, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Alternative to Animal Testing, Johns Hopkins University, Baltimore, MD, United States","institution_ids":["https://openalex.org/I145311948"]},{"raw_affiliation_string":"Department of Biology, University of Konstanz, Konstanz, Germany","institution_ids":["https://openalex.org/I189712700"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5108106140","display_name":"Thomas Luechtefeld","orcid":null},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I4210139130","display_name":"International Neuroethics Society","ror":"https://ror.org/04jj1kk85","country_code":"US","type":"other","lineage":["https://openalex.org/I4210139130"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Thomas Luechtefeld","raw_affiliation_strings":["Center for Alternative to Animal Testing, Johns Hopkins University, Baltimore, MD, United States","Insilica, Bethesda, MD, United States","Insilica, Bethesda, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Alternative to Animal Testing, Johns Hopkins University, Baltimore, MD, United States","institution_ids":["https://openalex.org/I145311948"]},{"raw_affiliation_string":"Insilica, Bethesda, MD, United States","institution_ids":["https://openalex.org/I4210139130"]},{"raw_affiliation_string":"Insilica, Bethesda, MD, USA","institution_ids":["https://openalex.org/I4210139130"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5108106140"],"corresponding_institution_ids":["https://openalex.org/I145311948","https://openalex.org/I4210139130"],"apc_list":{"value":1150,"currency":"USD","value_usd":1150},"apc_paid":{"value":1150,"currency":"USD","value_usd":1150},"fwci":15.6209,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.98390571,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"8","issue":null,"first_page":"1599412","last_page":"1599412"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.6883000135421753,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.6883000135421753,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.15039999783039093,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.041999999433755875,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8299393653869629},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.7171875238418579},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.711722731590271},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.6026995778083801},{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.579063355922699},{"id":"https://openalex.org/keywords/data-management","display_name":"Data management","score":0.552654504776001},{"id":"https://openalex.org/keywords/data-transformation","display_name":"Data transformation","score":0.5025417804718018},{"id":"https://openalex.org/keywords/data-access","display_name":"Data access","score":0.4870924949645996},{"id":"https://openalex.org/keywords/information-repository","display_name":"Information repository","score":0.4508431553840637},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4502585828304291},{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.44955262541770935},{"id":"https://openalex.org/keywords/data-extraction","display_name":"Data extraction","score":0.4415935277938843},{"id":"https://openalex.org/keywords/installation","display_name":"Installation","score":0.412193238735199},{"id":"https://openalex.org/keywords/computer-data-storage","display_name":"Computer data storage","score":0.2772822082042694},{"id":"https://openalex.org/keywords/data-warehouse","display_name":"Data warehouse","score":0.22333604097366333},{"id":"https://openalex.org/keywords/medline","display_name":"MEDLINE","score":0.09763860702514648}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8299393653869629},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.7171875238418579},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.711722731590271},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.6026995778083801},{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.579063355922699},{"id":"https://openalex.org/C1668388","wikidata":"https://www.wikidata.org/wiki/Q1149776","display_name":"Data management","level":2,"score":0.552654504776001},{"id":"https://openalex.org/C150670458","wikidata":"https://www.wikidata.org/wiki/Q4272815","display_name":"Data transformation","level":3,"score":0.5025417804718018},{"id":"https://openalex.org/C47487241","wikidata":"https://www.wikidata.org/wiki/Q5227230","display_name":"Data access","level":2,"score":0.4870924949645996},{"id":"https://openalex.org/C3102742","wikidata":"https://www.wikidata.org/wiki/Q6031177","display_name":"Information repository","level":3,"score":0.4508431553840637},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4502585828304291},{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.44955262541770935},{"id":"https://openalex.org/C2777466982","wikidata":"https://www.wikidata.org/wiki/Q5227287","display_name":"Data extraction","level":3,"score":0.4415935277938843},{"id":"https://openalex.org/C146778888","wikidata":"https://www.wikidata.org/wiki/Q836862","display_name":"Installation","level":2,"score":0.412193238735199},{"id":"https://openalex.org/C194739806","wikidata":"https://www.wikidata.org/wiki/Q66221","display_name":"Computer data storage","level":2,"score":0.2772822082042694},{"id":"https://openalex.org/C135572916","wikidata":"https://www.wikidata.org/wiki/Q193351","display_name":"Data warehouse","level":2,"score":0.22333604097366333},{"id":"https://openalex.org/C2779473830","wikidata":"https://www.wikidata.org/wiki/Q1540899","display_name":"MEDLINE","level":2,"score":0.09763860702514648},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[],"locations_count":9,"locations":[{"id":"doi:10.3389/frai.2025.1599412","is_oa":true,"landing_page_url":"https://doi.org/10.3389/frai.2025.1599412","pdf_url":"https://public-pages-files-2025.frontiersin.org/journals/artificial-intelligence/articles/10.3389/frai.2025.1599412/pdf","source":{"id":"https://openalex.org/S4210197006","display_name":"Frontiers in Artificial Intelligence","issn_l":"2624-8212","issn":["2624-8212"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Artificial Intelligence","raw_type":"journal-article"},{"id":"pmid:39253636","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39253636","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ArXiv","raw_type":null},{"id":"pmid:40880880","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40880880","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in artificial intelligence","raw_type":null},{"id":"pmh:oai:kops.uni-konstanz.de:123456789/76427","is_oa":true,"landing_page_url":"http://nbn-resolving.de/urn:nbn:de:bsz:352-2-ur83s3b3ig1u7","pdf_url":null,"source":{"id":"https://openalex.org/S4377196311","display_name":"KOPS (University of Konstanz)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I189712700","host_organization_name":"University of Konstanz","host_organization_lineage":["https://openalex.org/I189712700"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:arXiv.org:2408.17320","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2408.17320","pdf_url":"https://arxiv.org/pdf/2408.17320","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:11383443","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11383443","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11383443/pdf/nihpp-2408.17320v1.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ArXiv","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:1017d8b9c4b9460d8f0d3f73064c4a37","is_oa":true,"landing_page_url":"https://doaj.org/article/1017d8b9c4b9460d8f0d3f73064c4a37","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Artificial Intelligence, Vol 8 (2025)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:11189416","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12380851","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"doi:10.48550/arxiv.2408.17320","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2408.17320","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Preprint"}],"best_oa_location":{"id":"doi:10.3389/frai.2025.1599412","is_oa":true,"landing_page_url":"https://doi.org/10.3389/frai.2025.1599412","pdf_url":"https://public-pages-files-2025.frontiersin.org/journals/artificial-intelligence/articles/10.3389/frai.2025.1599412/pdf","source":{"id":"https://openalex.org/S4210197006","display_name":"Frontiers in Artificial Intelligence","issn_l":"2624-8212","issn":["2624-8212"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Artificial Intelligence","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.49000000953674316,"display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G2775536775","display_name":null,"funder_award_id":"R43 ES036069","funder_id":"https://openalex.org/F4320337361","funder_display_name":"National Institute of Environmental Health Sciences"},{"id":"https://openalex.org/G7974568428","display_name":null,"funder_award_id":"R43 ES033851","funder_id":"https://openalex.org/F4320337361","funder_display_name":"National Institute of Environmental Health Sciences"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320337361","display_name":"National Institute of Environmental Health Sciences","ror":"https://ror.org/00j4k1h63"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4402428437.pdf","grobid_xml":"https://content.openalex.org/works/W4402428437.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W1998497582","https://openalex.org/W2097771645","https://openalex.org/W2174602966","https://openalex.org/W2177317049","https://openalex.org/W2204695023","https://openalex.org/W2320983896","https://openalex.org/W2409470256","https://openalex.org/W2462053388","https://openalex.org/W2473190403","https://openalex.org/W2558999090","https://openalex.org/W2617033517","https://openalex.org/W2775195388","https://openalex.org/W2783207633","https://openalex.org/W2811996766","https://openalex.org/W2822962393","https://openalex.org/W2899731923","https://openalex.org/W2911489562","https://openalex.org/W2949311246","https://openalex.org/W2963921098","https://openalex.org/W2997757919","https://openalex.org/W3109892317","https://openalex.org/W3131088898","https://openalex.org/W3159726507","https://openalex.org/W3215139907","https://openalex.org/W4286111163","https://openalex.org/W4319348457","https://openalex.org/W4319813194","https://openalex.org/W4365504037","https://openalex.org/W4379184641","https://openalex.org/W4385185769","https://openalex.org/W4386255575","https://openalex.org/W4387704161","https://openalex.org/W4394061293","https://openalex.org/W4405185373","https://openalex.org/W6857831214"],"related_works":["https://openalex.org/W2914128081","https://openalex.org/W4205595170","https://openalex.org/W2364409751","https://openalex.org/W2393746579","https://openalex.org/W2515706388","https://openalex.org/W2152243665","https://openalex.org/W4238975963","https://openalex.org/W2015777333","https://openalex.org/W3170425103","https://openalex.org/W2380591877"],"abstract_inverted_index":{"Introduction:":[0],"Researchers":[1],"in":[2],"biomedicine":[3],"and":[4,12,26,43,71,94,131,151,161],"public":[5,41,138],"health":[6],"often":[7],"spend":[8],"weeks":[9],"locating,":[10],"cleansing,":[11],"integrating":[13,136],"data":[14,74,126,142,173],"from":[15,115],"disparate":[16],"sources":[17],"before":[18],"analysis":[19],"can":[20,97],"begin.":[21],"This":[22],"redundancy":[23],"slows":[24],"discovery":[25],"leads":[27],"to":[28,101,117],"inconsistent":[29],"pipelines.":[30],"Methods:":[31],"We":[32],"created":[33],"BioBricks.ai,":[34],"an":[35,60],"open,":[36],"centralized":[37],"repository":[38,58],"that":[39,108],"packages":[40],"biological":[42],"chemical":[44],"datasets":[45,89],"as":[46,143],"modular":[47],"\"bricks.\"":[48],"Each":[49],"brick":[50,159],"is":[51,113],"a":[52,78],"Data":[53],"Version":[54],"Control":[55],"(DVC)":[56],"Git":[57],"containing":[59],"extract\u2011transform\u2011load":[61],"(ETL)":[62],"pipeline.":[63],"A":[64],"package\u2011manager-like":[65],"interface":[66],"handles":[67],"installation,":[68],"dependency":[69],"resolution,":[70],"updates,":[72],"while":[73],"are":[75],"delivered":[76],"through":[77],"unified":[79],"backend":[80],"(https://biobricks.ai).":[81],"Results:":[82],"The":[83],"current":[84],"release":[85],"provides":[86],">90":[87],"curated":[88],"spanning":[90],"genomics,":[91],"proteomics,":[92],"cheminformatics,":[93],"epidemiology.":[95],"Bricks":[96],"be":[98],"combined":[99],"programmatically":[100],"build":[102],"composite":[103],"resources;":[104],"benchmark":[105],"use\u2011cases":[106],"show":[107],"assembling":[109],"multi\u2011dataset":[110],"analytic":[111],"cohorts":[112],"reduced":[114],"days":[116],"minutes":[118],"compared":[119],"with":[120],"bespoke":[121],"scripts.":[122],"Discussion:":[123],"BioBricks.ai":[124],"accelerates":[125],"access,":[127],"promotes":[128],"reproducible":[129],"workflows,":[130],"lowers":[132],"the":[133,146,176],"barrier":[134],"for":[135],"heterogeneous":[137],"datasets.":[139],"By":[140],"treating":[141],"version\u2011controlled":[144],"software,":[145],"platform":[147],"encourages":[148],"community":[149],"contributions":[150],"reduces":[152],"redundant":[153],"engineering":[154],"effort.":[155],"Continued":[156],"expansion":[157],"of":[158],"coverage":[160],"automated":[162],"provenance":[163],"tracking":[164],"will":[165],"further":[166],"enhance":[167],"FAIR":[168],"(Findable,":[169],"Accessible,":[170],"Interoperable,":[171],"Reusable)":[172],"practices":[174],"across":[175],"life\u2011science":[177],"community.":[178]},"counts_by_year":[{"year":2026,"cited_by_count":6}],"updated_date":"2026-07-10T07:45:09.275182","created_date":"2024-09-11T00:00:00"}
