{"id":"https://openalex.org/W4403268668","doi":"https://doi.org/10.3389/frai.2024.1487335","title":"Predicting clinical trial success for Clostridium difficile infections based on preclinical data","display_name":"Predicting clinical trial success for Clostridium difficile infections based on preclinical data","publication_year":2024,"publication_date":"2024-10-09","ids":{"openalex":"https://openalex.org/W4403268668","doi":"https://doi.org/10.3389/frai.2024.1487335","pmid":"https://pubmed.ncbi.nlm.nih.gov/39444663"},"language":"en","primary_location":{"id":"doi:10.3389/frai.2024.1487335","is_oa":true,"landing_page_url":"https://doi.org/10.3389/frai.2024.1487335","pdf_url":"https://www.frontiersin.org/journals/artificial-intelligence/articles/10.3389/frai.2024.1487335/pdf","source":{"id":"https://openalex.org/S4210197006","display_name":"Frontiers in Artificial Intelligence","issn_l":"2624-8212","issn":["2624-8212"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Artificial Intelligence","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.frontiersin.org/journals/artificial-intelligence/articles/10.3389/frai.2024.1487335/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100600844","display_name":"Fangzhou Li","orcid":"https://orcid.org/0000-0002-4999-4662"},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fangzhou Li","raw_affiliation_strings":["Department of Computer Science, University of California, Davis, Davis, CA, United States","Genome Center, University of California, Davis, Davis, CA, United States","USDA/NSF AI Institute for Next Generation Food Systems, University of California, Davis, Davis, CA, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of California, Davis, Davis, CA, United States","institution_ids":["https://openalex.org/I84218800"]},{"raw_affiliation_string":"Genome Center, University of California, Davis, Davis, CA, United States","institution_ids":["https://openalex.org/I84218800"]},{"raw_affiliation_string":"USDA/NSF AI Institute for Next Generation Food Systems, University of California, Davis, Davis, CA, United States","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003062506","display_name":"Jason Youn","orcid":"https://orcid.org/0000-0002-5925-0261"},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jason Youn","raw_affiliation_strings":["Department of Computer Science, University of California, Davis, Davis, CA, United States","Genome Center, University of California, Davis, Davis, CA, United States","USDA/NSF AI Institute for Next Generation Food Systems, University of California, Davis, Davis, CA, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of California, Davis, Davis, CA, United States","institution_ids":["https://openalex.org/I84218800"]},{"raw_affiliation_string":"Genome Center, University of California, Davis, Davis, CA, United States","institution_ids":["https://openalex.org/I84218800"]},{"raw_affiliation_string":"USDA/NSF AI Institute for Next Generation Food Systems, University of California, Davis, Davis, CA, United States","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108179511","display_name":"Christian Millsop","orcid":null},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christian Millsop","raw_affiliation_strings":["Department of Computer Science, University of California, Davis, Davis, CA, United States","Genome Center, University of California, Davis, Davis, CA, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of California, Davis, Davis, CA, United States","institution_ids":["https://openalex.org/I84218800"]},{"raw_affiliation_string":"Genome Center, University of California, Davis, Davis, CA, United States","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004351739","display_name":"Ilias Tagkopoulos","orcid":"https://orcid.org/0000-0003-1104-7616"},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ilias Tagkopoulos","raw_affiliation_strings":["Department of Computer Science, University of California, Davis, Davis, CA, United States","Genome Center, University of California, Davis, Davis, CA, United States","USDA/NSF AI Institute for Next Generation Food Systems, University of California, Davis, Davis, CA, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of California, Davis, Davis, CA, United States","institution_ids":["https://openalex.org/I84218800"]},{"raw_affiliation_string":"Genome Center, University of California, Davis, Davis, CA, United States","institution_ids":["https://openalex.org/I84218800"]},{"raw_affiliation_string":"USDA/NSF AI Institute for Next Generation Food Systems, University of California, Davis, Davis, CA, United States","institution_ids":["https://openalex.org/I84218800"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5004351739"],"corresponding_institution_ids":["https://openalex.org/I84218800"],"apc_list":{"value":1950,"currency":"CHF","value_usd":2353},"apc_paid":{"value":1950,"currency":"CHF","value_usd":2353},"fwci":0.5835,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.66727355,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":98},"biblio":{"volume":"7","issue":null,"first_page":"1487335","last_page":"1487335"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11288","display_name":"Clostridium difficile and Clostridium perfringens research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11288","display_name":"Clostridium difficile and Clostridium perfringens research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10976","display_name":"Viral gastroenteritis research and epidemiology","score":0.963699996471405,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11124","display_name":"Protein purification and stability","score":0.9333999752998352,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.6753779053688049},{"id":"https://openalex.org/keywords/clostridium-difficile","display_name":"Clostridium difficile","score":0.6299179792404175},{"id":"https://openalex.org/keywords/clinical-endpoint","display_name":"Clinical endpoint","score":0.5683577656745911},{"id":"https://openalex.org/keywords/clinical-trial","display_name":"Clinical trial","score":0.5464684963226318},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.43507885932922363},{"id":"https://openalex.org/keywords/oncology","display_name":"Oncology","score":0.41487500071525574},{"id":"https://openalex.org/keywords/drug-development","display_name":"Drug development","score":0.41295135021209717},{"id":"https://openalex.org/keywords/univariate","display_name":"Univariate","score":0.41153252124786377},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.4004812240600586},{"id":"https://openalex.org/keywords/intensive-care-medicine","display_name":"Intensive care medicine","score":0.37906700372695923},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.36250847578048706},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.32213830947875977},{"id":"https://openalex.org/keywords/antibiotics","display_name":"Antibiotics","score":0.22185438871383667},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.2088276743888855},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.15859156847000122},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.13430863618850708},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.0966847836971283}],"concepts":[{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.6753779053688049},{"id":"https://openalex.org/C2994496256","wikidata":"https://www.wikidata.org/wiki/Q27031090","display_name":"Clostridium difficile","level":3,"score":0.6299179792404175},{"id":"https://openalex.org/C203092338","wikidata":"https://www.wikidata.org/wiki/Q1340863","display_name":"Clinical endpoint","level":3,"score":0.5683577656745911},{"id":"https://openalex.org/C535046627","wikidata":"https://www.wikidata.org/wiki/Q30612","display_name":"Clinical trial","level":2,"score":0.5464684963226318},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.43507885932922363},{"id":"https://openalex.org/C143998085","wikidata":"https://www.wikidata.org/wiki/Q162555","display_name":"Oncology","level":1,"score":0.41487500071525574},{"id":"https://openalex.org/C64903051","wikidata":"https://www.wikidata.org/wiki/Q2198549","display_name":"Drug development","level":3,"score":0.41295135021209717},{"id":"https://openalex.org/C199163554","wikidata":"https://www.wikidata.org/wiki/Q1681619","display_name":"Univariate","level":3,"score":0.41153252124786377},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.4004812240600586},{"id":"https://openalex.org/C177713679","wikidata":"https://www.wikidata.org/wiki/Q679690","display_name":"Intensive care medicine","level":1,"score":0.37906700372695923},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.36250847578048706},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.32213830947875977},{"id":"https://openalex.org/C501593827","wikidata":"https://www.wikidata.org/wiki/Q12187","display_name":"Antibiotics","level":2,"score":0.22185438871383667},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.2088276743888855},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.15859156847000122},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.13430863618850708},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0966847836971283},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.0},{"id":"https://openalex.org/C161584116","wikidata":"https://www.wikidata.org/wiki/Q1952580","display_name":"Multivariate statistics","level":2,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.3389/frai.2024.1487335","is_oa":true,"landing_page_url":"https://doi.org/10.3389/frai.2024.1487335","pdf_url":"https://www.frontiersin.org/journals/artificial-intelligence/articles/10.3389/frai.2024.1487335/pdf","source":{"id":"https://openalex.org/S4210197006","display_name":"Frontiers in Artificial Intelligence","issn_l":"2624-8212","issn":["2624-8212"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Artificial Intelligence","raw_type":"journal-article"},{"id":"pmid:39444663","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39444663","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in artificial intelligence","raw_type":"Journal Article"},{"id":"pmh:oai:escholarship.org:ark:/13030/qt7wv7j62p","is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/7wv7j62p","pdf_url":"https://escholarship.org/content/qt7wv7j62p/qt7wv7j62p.pdf","source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Artificial Intelligence, vol 7","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:11496251","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11496251","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11496251/pdf/frai-07-1487335.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Front Artif Intell","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:927beebfd4b34e8bb294ee0e31d16fcc","is_oa":true,"landing_page_url":"https://doaj.org/article/927beebfd4b34e8bb294ee0e31d16fcc","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Artificial Intelligence, Vol 7 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3389/frai.2024.1487335","is_oa":true,"landing_page_url":"https://doi.org/10.3389/frai.2024.1487335","pdf_url":"https://www.frontiersin.org/journals/artificial-intelligence/articles/10.3389/frai.2024.1487335/pdf","source":{"id":"https://openalex.org/S4210197006","display_name":"Frontiers in Artificial Intelligence","issn_l":"2624-8212","issn":["2624-8212"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Artificial Intelligence","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.4000000059604645}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4403268668.pdf","grobid_xml":"https://content.openalex.org/works/W4403268668.grobid-xml"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W187164435","https://openalex.org/W1895993106","https://openalex.org/W1971008225","https://openalex.org/W1976827275","https://openalex.org/W1988790447","https://openalex.org/W2021586066","https://openalex.org/W2029122407","https://openalex.org/W2051113797","https://openalex.org/W2076798812","https://openalex.org/W2101234009","https://openalex.org/W2123831499","https://openalex.org/W2130150046","https://openalex.org/W2130158951","https://openalex.org/W2131038214","https://openalex.org/W2147511770","https://openalex.org/W2148143831","https://openalex.org/W2166550586","https://openalex.org/W2176028050","https://openalex.org/W2182683962","https://openalex.org/W2419246550","https://openalex.org/W2461620095","https://openalex.org/W2789399687","https://openalex.org/W2799462250","https://openalex.org/W2885447570","https://openalex.org/W2898397916","https://openalex.org/W2900523370","https://openalex.org/W2911489562","https://openalex.org/W2911964244","https://openalex.org/W2919115771","https://openalex.org/W2932900108","https://openalex.org/W2948524443","https://openalex.org/W2962862931","https://openalex.org/W2963899699","https://openalex.org/W2970921286","https://openalex.org/W2983879675","https://openalex.org/W3010058517","https://openalex.org/W3034655770","https://openalex.org/W3146613606","https://openalex.org/W3160301207","https://openalex.org/W4211238337","https://openalex.org/W4299408792","https://openalex.org/W4401585044","https://openalex.org/W6607583633","https://openalex.org/W6737947904"],"related_works":["https://openalex.org/W1828158523","https://openalex.org/W2047547195","https://openalex.org/W204175656","https://openalex.org/W2803255289","https://openalex.org/W1512294453","https://openalex.org/W1993992974","https://openalex.org/W2605247606","https://openalex.org/W2470067656","https://openalex.org/W2188607138","https://openalex.org/W1510385229"],"abstract_inverted_index":{"Preclinical":[0],"models":[1,38,87],"are":[2,97],"ubiquitous":[3],"and":[4,51,80,94,124,136,162,178],"essential":[5],"for":[6,32],"drug":[7,120,176],"discovery,":[8],"yet":[9],"our":[10],"understanding":[11],"of":[12,30,48,83,100,130,134,143],"how":[13],"well":[14],"they":[15],"translate":[16],"to":[17,39,109,159,168,174],"clinical":[18,52,169,180],"outcomes":[19],"is":[20,67],"limited.":[21],"In":[22],"this":[23],"study,":[24],"we":[25],"investigate":[26],"the":[27,49,63,112,146],"translational":[28,150],"success":[29],"treatments":[31],"Clostridium":[33],"difficile":[34],"infection":[35],"from":[36],"animal":[37],"human":[40],"patients.":[41],"Our":[42],"analysis":[43,60,82],"shows":[44,61,88],"that":[45,62,89],"only":[46,139],"36%":[47],"preclinical":[50,114,167],"experiment":[53],"pairs":[54],"result":[55],"in":[56],"translation":[57,70,101,170],"success.":[58,102],"Univariate":[59],"sustained":[64,91],"response":[65,92],"endpoint":[66,93],"correlated":[68],"with":[69],"failure":[71],"(SRC":[72],"=":[73,76],"-0.20,":[74],"p-value":[75],"1.53":[77],"\u00d7":[78],"10\u221254),":[79],"explainability":[81],"multi-variate":[84],"random":[85],"forest":[86],"both":[90],"subject":[95],"age":[96],"negative":[98],"predictors":[99],"We":[103],"have":[104],"developed":[105],"a":[106,166],"recommendation":[107],"system":[108,148,173],"help":[110],"plan":[111],"right":[113],"study":[115],"given":[116],"factors":[117],"such":[118],"as":[119,165],"dosage,":[121,123],"bacterial":[122],"preclinical/clinical":[125],"endpoint.":[126],"With":[127],"an":[128],"accuracy":[129],"0.76":[131],"(F1":[132],"score":[133],"0.71)":[135],"by":[137,152],"using":[138],"7":[140],"features":[141],"(out":[142],"68":[144],"total),":[145],"proposed":[147],"boosts":[149],"efficiency":[151],"25%.":[153],"The":[154],"method":[155],"presented":[156],"can":[157,163],"extend":[158],"any":[160],"disease":[161],"serve":[164],"decision":[171],"support":[172],"accelerate":[175],"discovery":[177],"de-risk":[179],"outcomes.":[181]},"counts_by_year":[{"year":2026,"cited_by_count":2}],"updated_date":"2026-08-25T07:29:55.448023","created_date":"2025-10-10T00:00:00"}
