{"id":"https://openalex.org/W4362671481","doi":"https://doi.org/10.3389/frai.2023.1128153","title":"Cracking the genetic code with neural networks","display_name":"Cracking the genetic code with neural networks","publication_year":2023,"publication_date":"2023-04-06","ids":{"openalex":"https://openalex.org/W4362671481","doi":"https://doi.org/10.3389/frai.2023.1128153","pmid":"https://pubmed.ncbi.nlm.nih.gov/37091301"},"language":"en","primary_location":{"id":"doi:10.3389/frai.2023.1128153","is_oa":true,"landing_page_url":"https://doi.org/10.3389/frai.2023.1128153","pdf_url":"https://www.frontiersin.org/articles/10.3389/frai.2023.1128153/pdf","source":{"id":"https://openalex.org/S4210197006","display_name":"Frontiers in Artificial Intelligence","issn_l":"2624-8212","issn":["2624-8212"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Artificial Intelligence","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.frontiersin.org/articles/10.3389/frai.2023.1128153/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5009807118","display_name":"Marc Joiret","orcid":"https://orcid.org/0000-0001-5381-4196"},"institutions":[{"id":"https://openalex.org/I157674565","display_name":"University of Li\u00e8ge","ror":"https://ror.org/00afp2z80","country_code":"BE","type":"education","lineage":["https://openalex.org/I157674565"]}],"countries":["BE"],"is_corresponding":true,"raw_author_name":"Marc Joiret","raw_affiliation_strings":["Biomechanics Research Unit, GIGA in Silico Medicine, Li\u00e8ge University, Li\u00e8ge, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomechanics Research Unit, GIGA in Silico Medicine, Li\u00e8ge University, Li\u00e8ge, Belgium","institution_ids":["https://openalex.org/I157674565"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051614264","display_name":"Marine Leclercq","orcid":"https://orcid.org/0000-0002-3974-0060"},"institutions":[{"id":"https://openalex.org/I157674565","display_name":"University of Li\u00e8ge","ror":"https://ror.org/00afp2z80","country_code":"BE","type":"education","lineage":["https://openalex.org/I157674565"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Marine Leclercq","raw_affiliation_strings":["Cancer Signaling, GIGA Stem Cells, Li\u00e8ge University, Li\u00e8ge, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cancer Signaling, GIGA Stem Cells, Li\u00e8ge University, Li\u00e8ge, Belgium","institution_ids":["https://openalex.org/I157674565"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052505881","display_name":"Gaspard Lambrechts","orcid":null},"institutions":[{"id":"https://openalex.org/I157674565","display_name":"University of Li\u00e8ge","ror":"https://ror.org/00afp2z80","country_code":"BE","type":"education","lineage":["https://openalex.org/I157674565"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Gaspard Lambrechts","raw_affiliation_strings":["Department of Electrical Engineering and Computer Science, Artificial Intelligence and Deep Learning, Montefiore Institute, Li\u00e8ge University, Li\u00e8ge, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, Artificial Intelligence and Deep Learning, Montefiore Institute, Li\u00e8ge University, Li\u00e8ge, Belgium","institution_ids":["https://openalex.org/I157674565"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041911057","display_name":"Francesca Rapino","orcid":"https://orcid.org/0000-0002-4343-3805"},"institutions":[{"id":"https://openalex.org/I157674565","display_name":"University of Li\u00e8ge","ror":"https://ror.org/00afp2z80","country_code":"BE","type":"education","lineage":["https://openalex.org/I157674565"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Francesca Rapino","raw_affiliation_strings":["Cancer Signaling, GIGA Stem Cells, Li\u00e8ge University, Li\u00e8ge, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cancer Signaling, GIGA Stem Cells, Li\u00e8ge University, Li\u00e8ge, Belgium","institution_ids":["https://openalex.org/I157674565"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030325551","display_name":"Pierre Close","orcid":"https://orcid.org/0000-0002-8844-9616"},"institutions":[{"id":"https://openalex.org/I157674565","display_name":"University of Li\u00e8ge","ror":"https://ror.org/00afp2z80","country_code":"BE","type":"education","lineage":["https://openalex.org/I157674565"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Pierre Close","raw_affiliation_strings":["Cancer Signaling, GIGA Stem Cells, Li\u00e8ge University, Li\u00e8ge, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cancer Signaling, GIGA Stem Cells, Li\u00e8ge University, Li\u00e8ge, Belgium","institution_ids":["https://openalex.org/I157674565"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017670779","display_name":"Gilles Louppe","orcid":"https://orcid.org/0000-0002-2082-3106"},"institutions":[{"id":"https://openalex.org/I157674565","display_name":"University of Li\u00e8ge","ror":"https://ror.org/00afp2z80","country_code":"BE","type":"education","lineage":["https://openalex.org/I157674565"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Gilles Louppe","raw_affiliation_strings":["Department of Electrical Engineering and Computer Science, Artificial Intelligence and Deep Learning, Montefiore Institute, Li\u00e8ge University, Li\u00e8ge, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, Artificial Intelligence and Deep Learning, Montefiore Institute, Li\u00e8ge University, Li\u00e8ge, Belgium","institution_ids":["https://openalex.org/I157674565"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030220964","display_name":"Liesbet Geris","orcid":"https://orcid.org/0000-0002-8180-1445"},"institutions":[{"id":"https://openalex.org/I157674565","display_name":"University of Li\u00e8ge","ror":"https://ror.org/00afp2z80","country_code":"BE","type":"education","lineage":["https://openalex.org/I157674565"]},{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Liesbet Geris","raw_affiliation_strings":["Biomechanics Research Unit, GIGA in Silico Medicine, Li\u00e8ge University, Li\u00e8ge, Belgium","Biomechanics Section, KU Leuven, Heverlee, Belgium","Skeletal Biology and Engineering Research Center, KU Leuven, Leuven, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomechanics Research Unit, GIGA in Silico Medicine, Li\u00e8ge University, Li\u00e8ge, Belgium","institution_ids":["https://openalex.org/I157674565"]},{"raw_affiliation_string":"Biomechanics Section, KU Leuven, Heverlee, Belgium","institution_ids":["https://openalex.org/I99464096"]},{"raw_affiliation_string":"Skeletal Biology and Engineering Research Center, KU Leuven, Leuven, Belgium","institution_ids":["https://openalex.org/I99464096"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5009807118"],"corresponding_institution_ids":["https://openalex.org/I157674565"],"apc_list":{"value":2125,"currency":"USD","value_usd":2125},"apc_paid":{"value":2099,"currency":"EUR","value_usd":2263},"fwci":0.5544,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.60468746,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"6","issue":null,"first_page":"1128153","last_page":"1128153"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9901000261306763,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genetic-code","display_name":"Genetic code","score":0.800995945930481},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.6902143359184265},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6479239463806152},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6394689083099365},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.5568446516990662},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.524839460849762},{"id":"https://openalex.org/keywords/amino-acid","display_name":"Amino acid","score":0.4788927137851715},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.45620203018188477},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.40822839736938477},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.3556031286716461},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24546578526496887},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.20715659856796265},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1664946973323822}],"concepts":[{"id":"https://openalex.org/C10853874","wikidata":"https://www.wikidata.org/wiki/Q180618","display_name":"Genetic code","level":3,"score":0.800995945930481},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.6902143359184265},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6479239463806152},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6394689083099365},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.5568446516990662},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.524839460849762},{"id":"https://openalex.org/C515207424","wikidata":"https://www.wikidata.org/wiki/Q8066","display_name":"Amino acid","level":2,"score":0.4788927137851715},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.45620203018188477},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.40822839736938477},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.3556031286716461},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24546578526496887},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.20715659856796265},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1664946973323822}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.3389/frai.2023.1128153","is_oa":true,"landing_page_url":"https://doi.org/10.3389/frai.2023.1128153","pdf_url":"https://www.frontiersin.org/articles/10.3389/frai.2023.1128153/pdf","source":{"id":"https://openalex.org/S4210197006","display_name":"Frontiers in Artificial Intelligence","issn_l":"2624-8212","issn":["2624-8212"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Artificial Intelligence","raw_type":"journal-article"},{"id":"pmid:37091301","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37091301","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in artificial intelligence","raw_type":null},{"id":"pmh:oai:lirias2repo.kuleuven.be:20.500.12942/744449","is_oa":true,"landing_page_url":"https://lirias.kuleuven.be/handle/20.500.12942/744449","pdf_url":"https://lirias.kuleuven.be/retrieve/f7be1e5d-57b8-4015-af58-fbeb450571c3","source":{"id":"https://openalex.org/S7407055369","display_name":"Lirias","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Artificial Intelligence, vol. 6, Art.No. ARTN 1128153","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:orbi.ulg.ac.be:2268/302173","is_oa":true,"landing_page_url":"https://orbi.uliege.be/handle/2268/302173","pdf_url":"https://orbi.uliege.be/bitstream/2268/302173/1/frai-06-1128153published.pdf","source":{"id":"https://openalex.org/S4306400651","display_name":"Open Repository and Bibliography (University of Li\u00e8ge)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I157674565","host_organization_name":"University of Li\u00e8ge","host_organization_lineage":["https://openalex.org/I157674565"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Artificial Intelligence, 6 (2023-04-06)","raw_type":"http://purl.org/coar/resource_type/c_6501"},{"id":"pmh:oai:pubmedcentral.nih.gov:10117997","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10117997","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10117997/pdf/frai-06-1128153.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Front Artif Intell","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:5953f6390c294c27883db9ffb648b52e","is_oa":true,"landing_page_url":"https://doaj.org/article/5953f6390c294c27883db9ffb648b52e","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Artificial Intelligence, Vol 6 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3389/frai.2023.1128153","is_oa":true,"landing_page_url":"https://doi.org/10.3389/frai.2023.1128153","pdf_url":"https://www.frontiersin.org/articles/10.3389/frai.2023.1128153/pdf","source":{"id":"https://openalex.org/S4210197006","display_name":"Frontiers in Artificial Intelligence","issn_l":"2624-8212","issn":["2624-8212"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Artificial Intelligence","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.5600000023841858,"display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G1124005961","display_name":null,"funder_award_id":"H2020/2014\u20132020","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G1953887145","display_name":null,"funder_award_id":"2014\u20102020","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G2982155883","display_name":null,"funder_award_id":"772418","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G434337789","display_name":null,"funder_award_id":"HORIZON2020","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4937468798","display_name":null,"funder_award_id":"H2020","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5240060951","display_name":null,"funder_award_id":"30480119","funder_id":"https://openalex.org/F4320321730","funder_display_name":"Fonds Wetenschappelijk Onderzoek"},{"id":"https://openalex.org/G5334833691","display_name":null,"funder_award_id":"30480119","funder_id":"https://openalex.org/F4320321390","funder_display_name":"Fonds De La Recherche Scientifique - FNRS"},{"id":"https://openalex.org/G570796765","display_name":null,"funder_award_id":"H2020/2014-2020","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G7531572436","display_name":null,"funder_award_id":"772418","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320321390","display_name":"Fonds De La Recherche Scientifique - FNRS","ror":"https://ror.org/03q83t159"},{"id":"https://openalex.org/F4320321730","display_name":"Fonds Wetenschappelijk Onderzoek","ror":"https://ror.org/03qtxy027"},{"id":"https://openalex.org/F4320331698","display_name":"Walloon excellence in life sciences and biotechnology","ror":"https://ror.org/04qbvw321"},{"id":"https://openalex.org/F4320332999","display_name":"Horizon 2020 Framework Programme","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4362671481.pdf"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W2007339694","https://openalex.org/W2024412145","https://openalex.org/W2053381312","https://openalex.org/W2064675550","https://openalex.org/W2067619114","https://openalex.org/W2094149843","https://openalex.org/W2096525273","https://openalex.org/W2126466006","https://openalex.org/W2507726354","https://openalex.org/W2799951520","https://openalex.org/W2893880892","https://openalex.org/W2934399013","https://openalex.org/W2935703330","https://openalex.org/W2948978827","https://openalex.org/W2951901532","https://openalex.org/W2952828589","https://openalex.org/W2969790209","https://openalex.org/W2979826702","https://openalex.org/W2985397232","https://openalex.org/W2996870404","https://openalex.org/W3017898632","https://openalex.org/W3127238141","https://openalex.org/W4247001379","https://openalex.org/W4251386234","https://openalex.org/W4254816979","https://openalex.org/W4281486232","https://openalex.org/W4281758821","https://openalex.org/W4283829342","https://openalex.org/W4290662212","https://openalex.org/W4302063686","https://openalex.org/W4385245566","https://openalex.org/W6797117068"],"related_works":["https://openalex.org/W4380075502","https://openalex.org/W4223943233","https://openalex.org/W4312200629","https://openalex.org/W4360585206","https://openalex.org/W4364306694","https://openalex.org/W1659534132","https://openalex.org/W4380086463","https://openalex.org/W4225161397","https://openalex.org/W2134889261","https://openalex.org/W3014300295"],"abstract_inverted_index":{"The":[0,17],"genetic":[1,152,243],"code":[2,153,244],"is":[3,158],"textbook":[4],"scientific":[5],"knowledge":[6],"that":[7,219],"was":[8,22],"soundly":[9],"established":[10],"without":[11],"resorting":[12],"to":[13,23,76,147,202,232,236],"Artificial":[14],"Intelligence":[15],"(AI).":[16],"goal":[18],"of":[19,50,69,91,105,107,116,123,134,145,164,170,186,189,194,226,241],"our":[20],"study":[21],"check":[24],"whether":[25],"a":[26,92,131,155,183],"neural":[27,61,140,156,204,228],"network":[28,62,157,205],"could":[29],"re-discover,":[30],"on":[31,102,212],"its":[32],"own,":[33],"the":[34,44,67,70,78,83,89,97,103,108,114,120,151,167,175,179,187,203,213,220,238,242],"mapping":[35],"links":[36],"between":[37,100],"codons":[38,101,172,181,195],"and":[39,42,64,118,166,215,224],"amino":[40,124,136,199],"acids":[41,125,137,200],"build":[43],"complete":[45],"deciphering":[46,133,169,239],"dictionary":[47],"upon":[48],"presentation":[49],"transcripts":[51],"proteins":[52,129],"data":[53,146],"training":[54,74,109,184,209],"pairs.":[55],"We":[56,86,111,217],"compared":[57],"different":[58],"Deep":[59,139],"Learning":[60],"architectures":[63],"estimated":[65],"quantitatively":[66],"size":[68],"required":[71],"human":[72,128],"transcriptomic":[73],"set":[75],"achieve":[77],"best":[79],"possible":[80],"accuracy":[81,163],"in":[82],"codon-to-amino-acid":[84],"mapping.":[85],"also":[87],"investigated":[88,113],"effect":[90],"codon":[93,177],"embedding":[94],"layer":[95],"assessing":[96],"semantic":[98],"similarity":[99],"rate":[104],"increase":[106],"accuracy.":[110],"further":[112],"benefit":[115],"quantifying":[117],"using":[119],"unbalanced":[121],"representations":[122],"within":[126],"real":[127],"for":[130],"faster":[132],"rare":[135,171],"codons.":[138],"networks":[141,229],"require":[142,182],"huge":[143],"amount":[144],"train":[148],"them.":[149],"Deciphering":[150],"by":[154],"no":[159],"exception.":[160],"A":[161],"test":[162],"100%":[165],"unequivocal":[168],"such":[173],"as":[174],"tryptophan":[176],"or":[178],"stop":[180],"dataset":[185],"order":[188],"4-22":[190],"millions":[191],"cumulated":[192],"pairs":[193],"with":[196],"their":[197],"associated":[198],"presented":[201],"over":[206],"around":[207],"7-40":[208],"epochs,":[210],"depending":[211],"architecture":[214],"settings.":[216],"confirm":[218],"wide":[221],"generic":[222],"capacities":[223],"modularity":[225],"deep":[227],"allow":[230],"them":[231],"be":[233],"customized":[234],"easily":[235],"learn":[237],"task":[240],"efficiently.":[245]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1}],"updated_date":"2026-08-04T08:18:43.703281","created_date":"2025-10-10T00:00:00"}