{"id":"https://openalex.org/W4315489421","doi":"https://doi.org/10.3389/frai.2022.1040295","title":"Crop genomic selection with deep learning and environmental data: A survey","display_name":"Crop genomic selection with deep learning and environmental data: A survey","publication_year":2023,"publication_date":"2023-01-10","ids":{"openalex":"https://openalex.org/W4315489421","doi":"https://doi.org/10.3389/frai.2022.1040295","pmid":"https://pubmed.ncbi.nlm.nih.gov/36703955"},"language":"en","primary_location":{"id":"doi:10.3389/frai.2022.1040295","is_oa":true,"landing_page_url":"https://doi.org/10.3389/frai.2022.1040295","pdf_url":"https://www.frontiersin.org/articles/10.3389/frai.2022.1040295/pdf","source":{"id":"https://openalex.org/S4210197006","display_name":"Frontiers in Artificial Intelligence","issn_l":"2624-8212","issn":["2624-8212"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Artificial Intelligence","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.frontiersin.org/articles/10.3389/frai.2022.1040295/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5070629871","display_name":"Sheikh Jubair","orcid":"https://orcid.org/0000-0002-0416-7866"},"institutions":[{"id":"https://openalex.org/I46247651","display_name":"University of Manitoba","ror":"https://ror.org/02gfys938","country_code":"CA","type":"education","lineage":["https://openalex.org/I46247651"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Sheikh Jubair","raw_affiliation_strings":["Department of Computer Science, University of Manitoba, Winnipeg, MB, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Manitoba, Winnipeg, MB, Canada","institution_ids":["https://openalex.org/I46247651"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002321933","display_name":"Michael Domaratzki","orcid":"https://orcid.org/0000-0001-9129-6676"},"institutions":[{"id":"https://openalex.org/I125749732","display_name":"Western University","ror":"https://ror.org/02grkyz14","country_code":"CA","type":"education","lineage":["https://openalex.org/I125749732"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Mike Domaratzki","raw_affiliation_strings":["Department of Computer Science, University of Western Ontario, London, ON, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Western Ontario, London, ON, Canada","institution_ids":["https://openalex.org/I125749732"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5070629871"],"corresponding_institution_ids":["https://openalex.org/I46247651"],"apc_list":{"value":1150,"currency":"USD","value_usd":1150},"apc_paid":{"value":1150,"currency":"USD","value_usd":1150},"fwci":11.52,"has_fulltext":true,"cited_by_count":36,"citation_normalized_percentile":{"value":0.98738204,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"5","issue":null,"first_page":"1040295","last_page":"1040295"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10594","display_name":"Genetic and phenotypic traits in livestock","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11229","display_name":"Genetics and Plant Breeding","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.6630316972732544},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.6503037214279175},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6341270208358765},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5514826774597168},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.5088015198707581},{"id":"https://openalex.org/keywords/environmental-data","display_name":"Environmental data","score":0.4872850179672241},{"id":"https://openalex.org/keywords/genomic-selection","display_name":"Genomic selection","score":0.4401646852493286},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.27074867486953735},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.13271570205688477},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08247745037078857}],"concepts":[{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.6630316972732544},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.6503037214279175},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6341270208358765},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5514826774597168},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.5088015198707581},{"id":"https://openalex.org/C2776356880","wikidata":"https://www.wikidata.org/wiki/Q5381206","display_name":"Environmental data","level":2,"score":0.4872850179672241},{"id":"https://openalex.org/C2992444039","wikidata":"https://www.wikidata.org/wiki/Q17145598","display_name":"Genomic selection","level":5,"score":0.4401646852493286},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.27074867486953735},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.13271570205688477},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08247745037078857},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.0},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3389/frai.2022.1040295","is_oa":true,"landing_page_url":"https://doi.org/10.3389/frai.2022.1040295","pdf_url":"https://www.frontiersin.org/articles/10.3389/frai.2022.1040295/pdf","source":{"id":"https://openalex.org/S4210197006","display_name":"Frontiers in Artificial Intelligence","issn_l":"2624-8212","issn":["2624-8212"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Artificial Intelligence","raw_type":"journal-article"},{"id":"pmid:36703955","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36703955","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in artificial intelligence","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9871498","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9871498","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC9871498/pdf/frai-05-1040295.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Front Artif Intell","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:8b551af8dea84a3aa093409745b99306","is_oa":true,"landing_page_url":"https://doaj.org/article/8b551af8dea84a3aa093409745b99306","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Artificial Intelligence, Vol 5 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3389/frai.2022.1040295","is_oa":true,"landing_page_url":"https://doi.org/10.3389/frai.2022.1040295","pdf_url":"https://www.frontiersin.org/articles/10.3389/frai.2022.1040295/pdf","source":{"id":"https://openalex.org/S4210197006","display_name":"Frontiers in Artificial Intelligence","issn_l":"2624-8212","issn":["2624-8212"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Artificial Intelligence","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.6700000166893005}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4315489421.pdf"},"referenced_works_count":149,"referenced_works":["https://openalex.org/W1920392306","https://openalex.org/W1928998639","https://openalex.org/W1970149620","https://openalex.org/W1973008533","https://openalex.org/W1974142473","https://openalex.org/W1982957378","https://openalex.org/W1985101707","https://openalex.org/W1985554184","https://openalex.org/W1986760892","https://openalex.org/W1988538876","https://openalex.org/W1993490180","https://openalex.org/W2007169373","https://openalex.org/W2008056655","https://openalex.org/W2041779820","https://openalex.org/W2043695363","https://openalex.org/W2061576695","https://openalex.org/W2064013109","https://openalex.org/W2064675550","https://openalex.org/W2095705004","https://openalex.org/W2109349581","https://openalex.org/W2139280752","https://openalex.org/W2145350980","https://openalex.org/W2151391832","https://openalex.org/W2168952261","https://openalex.org/W2270508619","https://openalex.org/W2295860457","https://openalex.org/W2301286436","https://openalex.org/W2301928852","https://openalex.org/W2439742035","https://openalex.org/W2485695685","https://openalex.org/W2523246573","https://openalex.org/W2523473862","https://openalex.org/W2524563032","https://openalex.org/W2540923435","https://openalex.org/W2598807615","https://openalex.org/W2605467427","https://openalex.org/W2608691562","https://openalex.org/W2612690371","https://openalex.org/W2616631294","https://openalex.org/W2617080590","https://openalex.org/W2618271825","https://openalex.org/W2626685773","https://openalex.org/W2745659858","https://openalex.org/W2757312963","https://openalex.org/W2760544538","https://openalex.org/W2765435954","https://openalex.org/W2777453591","https://openalex.org/W2783848843","https://openalex.org/W2789826026","https://openalex.org/W2791188304","https://openalex.org/W2792326773","https://openalex.org/W2795944109","https://openalex.org/W2802145818","https://openalex.org/W2806095510","https://openalex.org/W2887039631","https://openalex.org/W2888798257","https://openalex.org/W2896457183","https://openalex.org/W2897443710","https://openalex.org/W2899771611","https://openalex.org/W2907092512","https://openalex.org/W2907647207","https://openalex.org/W2911964244","https://openalex.org/W2919115771","https://openalex.org/W2921808728","https://openalex.org/W2922014473","https://openalex.org/W2923478849","https://openalex.org/W2940511043","https://openalex.org/W2944851425","https://openalex.org/W2945720445","https://openalex.org/W2949642792","https://openalex.org/W2952348048","https://openalex.org/W2959226774","https://openalex.org/W2963721881","https://openalex.org/W2964121744","https://openalex.org/W2964199361","https://openalex.org/W2965373594","https://openalex.org/W2973065284","https://openalex.org/W2980189150","https://openalex.org/W2981502071","https://openalex.org/W2983803089","https://openalex.org/W2991004173","https://openalex.org/W2993587506","https://openalex.org/W2997552745","https://openalex.org/W3001206897","https://openalex.org/W3005055299","https://openalex.org/W3005165084","https://openalex.org/W3005797556","https://openalex.org/W3006781240","https://openalex.org/W3007230497","https://openalex.org/W3013374712","https://openalex.org/W3016970897","https://openalex.org/W3034315405","https://openalex.org/W3037299379","https://openalex.org/W3037618930","https://openalex.org/W3045233820","https://openalex.org/W3093702141","https://openalex.org/W3095161279","https://openalex.org/W3098019734","https://openalex.org/W3098162620","https://openalex.org/W3100777112","https://openalex.org/W3101422073","https://openalex.org/W3103444592","https://openalex.org/W3103934428","https://openalex.org/W3111732785","https://openalex.org/W3116486569","https://openalex.org/W3118299025","https://openalex.org/W3118630218","https://openalex.org/W3120697286","https://openalex.org/W3127238141","https://openalex.org/W3132226805","https://openalex.org/W3136021864","https://openalex.org/W3136200416","https://openalex.org/W3168997536","https://openalex.org/W3183577120","https://openalex.org/W3184119917","https://openalex.org/W3193827159","https://openalex.org/W3198507020","https://openalex.org/W3202451896","https://openalex.org/W3203588026","https://openalex.org/W3205479187","https://openalex.org/W4200226918","https://openalex.org/W4210644905","https://openalex.org/W4226353284","https://openalex.org/W4250664506","https://openalex.org/W4252208101","https://openalex.org/W4253409503","https://openalex.org/W4280504002","https://openalex.org/W4280602147","https://openalex.org/W4283259285","https://openalex.org/W4283791586","https://openalex.org/W4284974258","https://openalex.org/W4285405240","https://openalex.org/W4288089799","https://openalex.org/W4294904679","https://openalex.org/W4295630590","https://openalex.org/W4296777270","https://openalex.org/W4296793739","https://openalex.org/W4299590935","https://openalex.org/W4307580628","https://openalex.org/W4309044837","https://openalex.org/W4309793872","https://openalex.org/W4310258577","https://openalex.org/W4310497343","https://openalex.org/W4383560187","https://openalex.org/W4400134761","https://openalex.org/W6674330103","https://openalex.org/W6720702543","https://openalex.org/W6739901393","https://openalex.org/W6769627184"],"related_works":["https://openalex.org/W2099180796","https://openalex.org/W4380075502","https://openalex.org/W4226103311","https://openalex.org/W4293558767","https://openalex.org/W2374640358","https://openalex.org/W2055359494","https://openalex.org/W4234835125","https://openalex.org/W2778305812","https://openalex.org/W2578632616","https://openalex.org/W4319736153"],"abstract_inverted_index":{"Machine":[0],"learning":[1,15,44,52,93],"techniques":[2,94],"for":[3,8,32,46,82],"crop":[4,48],"genomic":[5,101],"selections,":[6],"especially":[7,31,50],"single-environment":[9,29],"plants,":[10],"are":[11,79],"well-developed.":[12],"These":[13],"machine":[14,43],"models,":[16,53],"which":[17],"use":[18],"dense":[19],"genome-wide":[20],"markers":[21],"to":[22],"predict":[23],"phenotype,":[24,49],"routinely":[25],"perform":[26],"well":[27],"on":[28],"datasets,":[30],"complex":[33],"traits":[34],"affected":[35],"by":[36],"multiple":[37],"markers.":[38],"On":[39],"the":[40],"other":[41],"hand,":[42],"models":[45],"predicting":[47],"deep":[51,92],"using":[54],"datasets":[55],"that":[56,66,95],"span":[57],"different":[58],"environmental":[59,97],"conditions,":[60],"have":[61],"only":[62],"recently":[63],"emerged.":[64],"Models":[65],"can":[67],"accept":[68],"heterogeneous":[69],"data":[70,98],"sources,":[71],"such":[72],"as":[73],"temperature,":[74],"soil":[75],"conditions":[76],"and":[77],"precipitation,":[78],"natural":[80],"choices":[81],"modeling":[83],"GxE":[84],"in":[85],"multi-environment":[86],"prediction.":[87],"Here,":[88],"we":[89],"review":[90],"emerging":[91],"incorporate":[96],"directly":[99],"into":[100],"selection":[102],"models.":[103]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":12},{"year":2024,"cited_by_count":13},{"year":2023,"cited_by_count":5}],"updated_date":"2026-03-11T14:59:36.786465","created_date":"2023-01-11T00:00:00"}
