{"id":"https://openalex.org/W4400869464","doi":"https://doi.org/10.3389/fninf.2024.1376022","title":"Neuroimaging article reexecution and reproduction assessment system","display_name":"Neuroimaging article reexecution and reproduction assessment system","publication_year":2024,"publication_date":"2024-07-22","ids":{"openalex":"https://openalex.org/W4400869464","doi":"https://doi.org/10.3389/fninf.2024.1376022","pmid":"https://pubmed.ncbi.nlm.nih.gov/39104828"},"language":"en","primary_location":{"id":"doi:10.3389/fninf.2024.1376022","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fninf.2024.1376022","pdf_url":"https://www.frontiersin.org/journals/neuroinformatics/articles/10.3389/fninf.2024.1376022/pdf","source":{"id":"https://openalex.org/S179816892","display_name":"Frontiers in Neuroinformatics","issn_l":"1662-5196","issn":["1662-5196"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Neuroinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.frontiersin.org/journals/neuroinformatics/articles/10.3389/fninf.2024.1376022/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055227669","display_name":"Horea-Ioan Ioanas","orcid":"https://orcid.org/0000-0001-7037-2449"},"institutions":[{"id":"https://openalex.org/I107672454","display_name":"Dartmouth College","ror":"https://ror.org/049s0rh22","country_code":"US","type":"education","lineage":["https://openalex.org/I107672454"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Horea-Ioan Ioanas","raw_affiliation_strings":["Center for Open Neuroscience, Department of Psychological and Brain Sciences, Dartmouth College, Hanover, NH, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Open Neuroscience, Department of Psychological and Brain Sciences, Dartmouth College, Hanover, NH, United States","institution_ids":["https://openalex.org/I107672454"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055368045","display_name":"Austin Macdonald","orcid":"https://orcid.org/0000-0002-8124-807X"},"institutions":[{"id":"https://openalex.org/I107672454","display_name":"Dartmouth College","ror":"https://ror.org/049s0rh22","country_code":"US","type":"education","lineage":["https://openalex.org/I107672454"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Austin Macdonald","raw_affiliation_strings":["Center for Open Neuroscience, Department of Psychological and Brain Sciences, Dartmouth College, Hanover, NH, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Open Neuroscience, Department of Psychological and Brain Sciences, Dartmouth College, Hanover, NH, United States","institution_ids":["https://openalex.org/I107672454"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5074058957","display_name":"Yaroslav O. Halchenko","orcid":"https://orcid.org/0000-0003-3456-2493"},"institutions":[{"id":"https://openalex.org/I107672454","display_name":"Dartmouth College","ror":"https://ror.org/049s0rh22","country_code":"US","type":"education","lineage":["https://openalex.org/I107672454"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yaroslav O. Halchenko","raw_affiliation_strings":["Center for Open Neuroscience, Department of Psychological and Brain Sciences, Dartmouth College, Hanover, NH, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Open Neuroscience, Department of Psychological and Brain Sciences, Dartmouth College, Hanover, NH, United States","institution_ids":["https://openalex.org/I107672454"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5055227669"],"corresponding_institution_ids":["https://openalex.org/I107672454"],"apc_list":{"value":2950,"currency":"USD","value_usd":2950},"apc_paid":{"value":2950,"currency":"USD","value_usd":2950},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.07022161,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"18","issue":null,"first_page":"1376022","last_page":"1376022"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9927999973297119,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9927999973297119,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9846000075340271,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9836000204086304,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8263167142868042},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.6074307560920715},{"id":"https://openalex.org/keywords/transparency","display_name":"Transparency (behavior)","score":0.5538668036460876},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5220448970794678},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.5067811608314514},{"id":"https://openalex.org/keywords/standardization","display_name":"Standardization","score":0.42541080713272095},{"id":"https://openalex.org/keywords/best-practice","display_name":"Best practice","score":0.42136532068252563},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.399168998003006},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3681035041809082},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.35965466499328613},{"id":"https://openalex.org/keywords/computer-security","display_name":"Computer security","score":0.2048986852169037},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.17591309547424316}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8263167142868042},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.6074307560920715},{"id":"https://openalex.org/C2780233690","wikidata":"https://www.wikidata.org/wiki/Q535347","display_name":"Transparency (behavior)","level":2,"score":0.5538668036460876},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5220448970794678},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.5067811608314514},{"id":"https://openalex.org/C188087704","wikidata":"https://www.wikidata.org/wiki/Q369577","display_name":"Standardization","level":2,"score":0.42541080713272095},{"id":"https://openalex.org/C184356942","wikidata":"https://www.wikidata.org/wiki/Q830382","display_name":"Best practice","level":2,"score":0.42136532068252563},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.399168998003006},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3681035041809082},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.35965466499328613},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.2048986852169037},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.17591309547424316},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3389/fninf.2024.1376022","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fninf.2024.1376022","pdf_url":"https://www.frontiersin.org/journals/neuroinformatics/articles/10.3389/fninf.2024.1376022/pdf","source":{"id":"https://openalex.org/S179816892","display_name":"Frontiers in Neuroinformatics","issn_l":"1662-5196","issn":["1662-5196"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Neuroinformatics","raw_type":"journal-article"},{"id":"pmid:39104828","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39104828","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in neuroinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11298386","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11298386","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11298386/pdf/fninf-18-1376022.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Front Neuroinform","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:cd07e43622a5470396ee60e82314f679","is_oa":true,"landing_page_url":"https://doaj.org/article/cd07e43622a5470396ee60e82314f679","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Neuroinformatics, Vol 18 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3389/fninf.2024.1376022","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fninf.2024.1376022","pdf_url":"https://www.frontiersin.org/journals/neuroinformatics/articles/10.3389/fninf.2024.1376022/pdf","source":{"id":"https://openalex.org/S179816892","display_name":"Frontiers in Neuroinformatics","issn_l":"1662-5196","issn":["1662-5196"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Neuroinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4978453755","display_name":null,"funder_award_id":"2P41EB019936","funder_id":"https://openalex.org/F4320319990","funder_display_name":"National Institute for Health and Care Research"},{"id":"https://openalex.org/G5620677382","display_name":null,"funder_award_id":"1R24MH117295","funder_id":"https://openalex.org/F4320319990","funder_display_name":"National Institute for Health and Care Research"}],"funders":[{"id":"https://openalex.org/F4320319990","display_name":"National Institute for Health and Care Research","ror":"https://ror.org/0187kwz08"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4400869464.pdf","grobid_xml":"https://content.openalex.org/works/W4400869464.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W1810582528","https://openalex.org/W1897139626","https://openalex.org/W1988557303","https://openalex.org/W2113619522","https://openalex.org/W2117140276","https://openalex.org/W2136145485","https://openalex.org/W2144981148","https://openalex.org/W2151591509","https://openalex.org/W2529938006","https://openalex.org/W2560741446","https://openalex.org/W2586420338","https://openalex.org/W2940484047","https://openalex.org/W2977883299","https://openalex.org/W3043980307","https://openalex.org/W3081628229","https://openalex.org/W3173556047","https://openalex.org/W3185692352","https://openalex.org/W4220813117","https://openalex.org/W4224273251","https://openalex.org/W4297793708","https://openalex.org/W4390739569","https://openalex.org/W4393797074","https://openalex.org/W6730485799","https://openalex.org/W6770827961","https://openalex.org/W6893376471","https://openalex.org/W6939893327","https://openalex.org/W6949834599","https://openalex.org/W6969334010"],"related_works":["https://openalex.org/W2378767206","https://openalex.org/W1540871478","https://openalex.org/W328308450","https://openalex.org/W282641168","https://openalex.org/W2376963063","https://openalex.org/W2066396794","https://openalex.org/W2366734808","https://openalex.org/W2391444248","https://openalex.org/W2390716080","https://openalex.org/W2050399338"],"abstract_inverted_index":{"The":[0],"value":[1],"of":[2,31,58,74,137,153,168,211,237],"research":[3,46,230],"articles":[4,198],"is":[5,97],"increasingly":[6],"contingent":[7],"on":[8,225],"complex":[9],"data":[10,19,21,212],"analysis":[11,22,213],"results":[12],"which":[13,48,79,96,132,156,205],"substantiate":[14],"their":[15],"claims.":[16],"Compared":[17],"to":[18,27,90,159,175],"production,":[20],"more":[23],"readily":[24],"lends":[25],"itself":[26],"a":[28,75,87,92,108,151,201],"higher":[29,38],"standard":[30,39],"transparency":[32],"and":[33,100,118,149,184,215,232,235],"repeated":[34],"operator-independent":[35],"execution.":[36],"This":[37],"can":[40,171,206],"be":[41,123,173],"approached":[42],"via":[43,180],"fully":[44,196],"reexecutable":[45,114,197,229],"outputs,":[47],"contain":[49],"the":[50,63,134,142,166,209,216,226,238],"entire":[51,60],"instruction":[52],"set":[53],"for":[54,190,228],"automatic":[55],"end-to-end":[56],"generation":[57],"an":[59],"article":[61,78,115,147],"from":[62],"earliest":[64],"feasible":[65,202],"provenance":[66],"point.":[67],"In":[68,127],"this":[69,104,130,138],"study,":[70,139],"we":[71,140,221],"make":[72],"use":[73],"peer-reviewed":[76],"neuroimaging":[77],"provides":[80],"complete":[81],"but":[82],"fragile":[83],"reexecution":[84,94,148],"instructions,":[85],"as":[86,107],"starting":[88],"point":[89],"draft":[91],"new":[93],"system":[95,105,170,239],"both":[98,179],"robust":[99],"portable.":[101],"We":[102,162,193],"render":[103],"modular":[106],"core":[109,143],"design":[110],"aspect,":[111],"so":[112],"that":[113,195],"code,":[116],"data,":[117],"environment":[119],"specifications":[120],"could":[121],"potentially":[122],"substituted":[124],"or":[125],"adapted.":[126],"conjunction":[128],"with":[129,145],"system,":[131],"forms":[133],"demonstrative":[135],"product":[136],"detail":[141],"challenges":[144],"full":[146],"specify":[150],"number":[152],"best":[154,203],"practices":[155],"permitted":[157],"us":[158],"mitigate":[160],"them.":[161],"further":[163],"show":[164],"how":[165],"capabilities":[167],"our":[169],"subsequently":[172],"used":[174],"provide":[176],"reproducibility":[177],"assessments,":[178],"simple":[181],"statistical":[182],"metrics":[183],"by":[185],"visually":[186],"highlighting":[187],"divergent":[188],"elements":[189],"human":[191],"inspection.":[192],"argue":[194],"are":[199],"thus":[200],"practice,":[204],"greatly":[207],"enhance":[208],"understanding":[210],"variability":[214],"trust":[217],"in":[218],"results.":[219],"Lastly,":[220],"comment":[222],"at":[223],"length":[224],"outlook":[227],"outputs":[231],"encourage":[233],"re-use":[234],"derivation":[236],"produced":[240],"herein.":[241]},"counts_by_year":[],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
