{"id":"https://openalex.org/W4391965326","doi":"https://doi.org/10.3389/fninf.2024.1331220","title":"Accelerating spiking neural network simulations with PymoNNto and PymoNNtorch","display_name":"Accelerating spiking neural network simulations with PymoNNto and PymoNNtorch","publication_year":2024,"publication_date":"2024-02-20","ids":{"openalex":"https://openalex.org/W4391965326","doi":"https://doi.org/10.3389/fninf.2024.1331220","pmid":"https://pubmed.ncbi.nlm.nih.gov/38444756"},"language":"en","primary_location":{"id":"doi:10.3389/fninf.2024.1331220","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fninf.2024.1331220","pdf_url":"https://www.frontiersin.org/articles/10.3389/fninf.2024.1331220/pdf?isPublishedV2=False","source":{"id":"https://openalex.org/S179816892","display_name":"Frontiers in Neuroinformatics","issn_l":"1662-5196","issn":["1662-5196"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Neuroinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.frontiersin.org/articles/10.3389/fninf.2024.1331220/pdf?isPublishedV2=False","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089335220","display_name":"Marius Vieth","orcid":null},"institutions":[{"id":"https://openalex.org/I2801628138","display_name":"Frankfurt Institute for Advanced Studies","ror":"https://ror.org/05vmv8m79","country_code":"DE","type":"facility","lineage":["https://openalex.org/I2801628138"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Marius Vieth","raw_affiliation_strings":["Frankfurt Institute for Advanced Studies, Frankfurt am Main, Germany"],"affiliations":[{"raw_affiliation_string":"Frankfurt Institute for Advanced Studies, Frankfurt am Main, Germany","institution_ids":["https://openalex.org/I2801628138"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101770454","display_name":"Ali Rahimi","orcid":"https://orcid.org/0000-0002-6777-0435"},"institutions":[{"id":"https://openalex.org/I23946033","display_name":"University of Tehran","ror":"https://ror.org/05vf56z40","country_code":"IR","type":"education","lineage":["https://openalex.org/I23946033"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Ali Rahimi","raw_affiliation_strings":["Department of Mathematics, Statistics, and Computer Science - College of Science, University of Tehran, Tehran, Iran"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics, Statistics, and Computer Science - College of Science, University of Tehran, Tehran, Iran","institution_ids":["https://openalex.org/I23946033"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111055172","display_name":"Ashena Gorgan Mohammadi","orcid":"https://orcid.org/0000-0002-8998-3191"},"institutions":[{"id":"https://openalex.org/I23946033","display_name":"University of Tehran","ror":"https://ror.org/05vf56z40","country_code":"IR","type":"education","lineage":["https://openalex.org/I23946033"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Ashena Gorgan Mohammadi","raw_affiliation_strings":["Department of Mathematics, Statistics, and Computer Science - College of Science, University of Tehran, Tehran, Iran"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics, Statistics, and Computer Science - College of Science, University of Tehran, Tehran, Iran","institution_ids":["https://openalex.org/I23946033"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065703786","display_name":"Jochen Triesch","orcid":"https://orcid.org/0000-0001-8166-2441"},"institutions":[{"id":"https://openalex.org/I2801628138","display_name":"Frankfurt Institute for Advanced Studies","ror":"https://ror.org/05vmv8m79","country_code":"DE","type":"facility","lineage":["https://openalex.org/I2801628138"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Jochen Triesch","raw_affiliation_strings":["Frankfurt Institute for Advanced Studies, Frankfurt am Main, Germany"],"affiliations":[{"raw_affiliation_string":"Frankfurt Institute for Advanced Studies, Frankfurt am Main, Germany","institution_ids":["https://openalex.org/I2801628138"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052221301","display_name":"\u200eMohammad Ganjtabesh","orcid":"https://orcid.org/0000-0001-8062-8794"},"institutions":[{"id":"https://openalex.org/I23946033","display_name":"University of Tehran","ror":"https://ror.org/05vf56z40","country_code":"IR","type":"education","lineage":["https://openalex.org/I23946033"]}],"countries":["IR"],"is_corresponding":true,"raw_author_name":"Mohammad Ganjtabesh","raw_affiliation_strings":["Department of Mathematics, Statistics, and Computer Science - College of Science, University of Tehran, Tehran, Iran"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics, Statistics, and Computer Science - College of Science, University of Tehran, Tehran, Iran","institution_ids":["https://openalex.org/I23946033"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5052221301","https://openalex.org/A5065703786"],"corresponding_institution_ids":["https://openalex.org/I23946033","https://openalex.org/I2801628138"],"apc_list":{"value":2950,"currency":"USD","value_usd":2950},"apc_paid":{"value":2950,"currency":"USD","value_usd":2950},"fwci":1.7367,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.83908363,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"18","issue":null,"first_page":"1331220","last_page":"1331220"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10502","display_name":"Advanced Memory and Neural Computing","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2208","display_name":"Electrical and Electronic Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10502","display_name":"Advanced Memory and Neural Computing","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2208","display_name":"Electrical and Electronic Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12808","display_name":"Ferroelectric and Negative Capacitance Devices","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2208","display_name":"Electrical and Electronic Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10581","display_name":"Neural dynamics and brain function","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.8848082423210144},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8460729122161865},{"id":"https://openalex.org/keywords/spiking-neural-network","display_name":"Spiking neural network","score":0.7895771265029907},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.7858247756958008},{"id":"https://openalex.org/keywords/neuromorphic-engineering","display_name":"Neuromorphic engineering","score":0.7419847249984741},{"id":"https://openalex.org/keywords/implementation","display_name":"Implementation","score":0.6500124335289001},{"id":"https://openalex.org/keywords/toolbox","display_name":"Toolbox","score":0.6201571226119995},{"id":"https://openalex.org/keywords/programmer","display_name":"Programmer","score":0.5922691822052002},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.5476197600364685},{"id":"https://openalex.org/keywords/computer-architecture","display_name":"Computer architecture","score":0.4915700852870941},{"id":"https://openalex.org/keywords/computational-neuroscience","display_name":"Computational neuroscience","score":0.42007723450660706},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.41856810450553894},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.39413538575172424},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.342751145362854}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.8848082423210144},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8460729122161865},{"id":"https://openalex.org/C11731999","wikidata":"https://www.wikidata.org/wiki/Q9067355","display_name":"Spiking neural network","level":3,"score":0.7895771265029907},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.7858247756958008},{"id":"https://openalex.org/C151927369","wikidata":"https://www.wikidata.org/wiki/Q1981312","display_name":"Neuromorphic engineering","level":3,"score":0.7419847249984741},{"id":"https://openalex.org/C26713055","wikidata":"https://www.wikidata.org/wiki/Q245962","display_name":"Implementation","level":2,"score":0.6500124335289001},{"id":"https://openalex.org/C2777655017","wikidata":"https://www.wikidata.org/wiki/Q1501161","display_name":"Toolbox","level":2,"score":0.6201571226119995},{"id":"https://openalex.org/C2778514511","wikidata":"https://www.wikidata.org/wiki/Q1374194","display_name":"Programmer","level":2,"score":0.5922691822052002},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.5476197600364685},{"id":"https://openalex.org/C118524514","wikidata":"https://www.wikidata.org/wiki/Q173212","display_name":"Computer architecture","level":1,"score":0.4915700852870941},{"id":"https://openalex.org/C15286952","wikidata":"https://www.wikidata.org/wiki/Q8037925","display_name":"Computational neuroscience","level":2,"score":0.42007723450660706},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.41856810450553894},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.39413538575172424},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.342751145362854}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.3389/fninf.2024.1331220","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fninf.2024.1331220","pdf_url":"https://www.frontiersin.org/articles/10.3389/fninf.2024.1331220/pdf?isPublishedV2=False","source":{"id":"https://openalex.org/S179816892","display_name":"Frontiers in Neuroinformatics","issn_l":"1662-5196","issn":["1662-5196"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Neuroinformatics","raw_type":"journal-article"},{"id":"pmid:38444756","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38444756","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in neuroinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10913591","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10913591","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10913591/pdf/fninf-18-1331220.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Front Neuroinform","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:f6b06db316f444aab2b9b5df1957f41a","is_oa":true,"landing_page_url":"https://doaj.org/article/f6b06db316f444aab2b9b5df1957f41a","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Neuroinformatics, Vol 18 (2024)","raw_type":"article"},{"id":"pmh:oai:publikationen.ub.uni-frankfurt.de:78959","is_oa":true,"landing_page_url":"http://publikationen.ub.uni-frankfurt.de/frontdoor/index/index/docId/78959","pdf_url":null,"source":{"id":"https://openalex.org/S4306400432","display_name":"Publication Server of Goethe University Frankfurt am Main (Goethe University Frankfurt)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114090438","host_organization_name":"Goethe University Frankfurt","host_organization_lineage":["https://openalex.org/I114090438"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"doc-type:article"}],"best_oa_location":{"id":"doi:10.3389/fninf.2024.1331220","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fninf.2024.1331220","pdf_url":"https://www.frontiersin.org/articles/10.3389/fninf.2024.1331220/pdf?isPublishedV2=False","source":{"id":"https://openalex.org/S179816892","display_name":"Frontiers in Neuroinformatics","issn_l":"1662-5196","issn":["1662-5196"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Neuroinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4391965326.pdf"},"referenced_works_count":47,"referenced_works":["https://openalex.org/W1486852018","https://openalex.org/W1542932561","https://openalex.org/W1594730842","https://openalex.org/W1598466430","https://openalex.org/W1979854415","https://openalex.org/W1986246844","https://openalex.org/W1993792073","https://openalex.org/W2007815184","https://openalex.org/W2049391753","https://openalex.org/W2059351555","https://openalex.org/W2065125569","https://openalex.org/W2073813638","https://openalex.org/W2087861759","https://openalex.org/W2127950479","https://openalex.org/W2128084896","https://openalex.org/W2140886546","https://openalex.org/W2164653071","https://openalex.org/W2168073103","https://openalex.org/W2229595996","https://openalex.org/W2756710100","https://openalex.org/W2783525259","https://openalex.org/W2788296660","https://openalex.org/W2801498385","https://openalex.org/W2807457908","https://openalex.org/W2883294120","https://openalex.org/W2897402793","https://openalex.org/W2947372880","https://openalex.org/W2969331319","https://openalex.org/W2995517822","https://openalex.org/W3035965352","https://openalex.org/W3099878876","https://openalex.org/W3102313165","https://openalex.org/W3103266921","https://openalex.org/W3129730378","https://openalex.org/W3197085354","https://openalex.org/W3201870057","https://openalex.org/W3203183043","https://openalex.org/W3209887338","https://openalex.org/W4214775604","https://openalex.org/W4245635145","https://openalex.org/W4295312788","https://openalex.org/W4307870246","https://openalex.org/W4312438958","https://openalex.org/W4386227145","https://openalex.org/W4387409844","https://openalex.org/W6637749204","https://openalex.org/W6766978945"],"related_works":["https://openalex.org/W3089892344","https://openalex.org/W4386227293","https://openalex.org/W4313442939","https://openalex.org/W4372267706","https://openalex.org/W2885510266","https://openalex.org/W4288055417","https://openalex.org/W2960220682","https://openalex.org/W4205804651","https://openalex.org/W4287758233","https://openalex.org/W3136467750"],"abstract_inverted_index":{"Spiking":[0],"neural":[1,44,146],"network":[2,45,97],"simulations":[3,27,46],"are":[4],"a":[5,38,55],"central":[6],"tool":[7],"in":[8,54,99,118,130,148],"Computational":[9],"Neuroscience,":[10],"Artificial":[11],"Intelligence,":[12],"and":[13,22,57,115,127,136,142],"Neuromorphic":[14],"Engineering":[15],"research.":[16],"A":[17],"broad":[18],"range":[19],"of":[20,51,95,144],"simulators":[21,111],"software":[23],"frameworks":[24],"for":[25,42],"such":[26],"exist":[28],"with":[29,80,101,132],"different":[30],"target":[31],"application":[32],"areas.":[33],"Among":[34],"these,":[35],"PymoNNto":[36,61],"is":[37,77],"recent":[39],"Python-based":[40],"toolbox":[41],"spiking":[43,145],"that":[47],"emphasizes":[48],"the":[49,93,149],"embedding":[50],"custom":[52],"code":[53],"modular":[56,85,126],"flexible":[58,128],"way.":[59],"While":[60],"already":[62],"supports":[63],"GPU":[64,104,134],"implementations,":[65],"its":[66],"backend":[67],"relies":[68],"on":[69],"NumPy":[70],"operations.":[71],"Here":[72],"we":[73,88,122],"introduce":[74],"PymoNNtorch,":[75],"which":[76],"natively":[78],"implemented":[79],"PyTorch":[81],"while":[82],"retaining":[83],"PymoNNto's":[84,125],"design.":[86],"Furthermore,":[87],"demonstrate":[89],"how":[90,124],"changes":[91],"to":[92],"implementations":[94],"common":[96],"operations":[98,139],"combination":[100,131],"PymoNNtorch's":[102,133],"native":[103],"support":[105],"can":[106],"offer":[107],"speed-up":[108],"over":[109],"conventional":[110],"like":[112],"NEST,":[113],"ANNarchy,":[114],"Brian":[116],"2":[117],"certain":[119],"situations.":[120],"Overall,":[121],"show":[123],"design":[129],"acceleration":[135],"optimized":[137],"indexing":[138],"facilitate":[140],"research":[141],"development":[143],"networks":[147],"Python":[150],"programming":[151],"language.":[152]},"counts_by_year":[{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":2}],"updated_date":"2026-03-13T16:22:10.518609","created_date":"2025-10-10T00:00:00"}
