{"id":"https://openalex.org/W4388126249","doi":"https://doi.org/10.3389/fninf.2023.1271059","title":"Online interoperable resources for building hippocampal neuron models via the Hippocampus Hub","display_name":"Online interoperable resources for building hippocampal neuron models via the Hippocampus Hub","publication_year":2023,"publication_date":"2023-11-01","ids":{"openalex":"https://openalex.org/W4388126249","doi":"https://doi.org/10.3389/fninf.2023.1271059","pmid":"https://pubmed.ncbi.nlm.nih.gov/38025966"},"language":"en","primary_location":{"id":"doi:10.3389/fninf.2023.1271059","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fninf.2023.1271059","pdf_url":"https://www.frontiersin.org/articles/10.3389/fninf.2023.1271059/pdf?isPublishedV2=False","source":{"id":"https://openalex.org/S179816892","display_name":"Frontiers in Neuroinformatics","issn_l":"1662-5196","issn":["1662-5196"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Neuroinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.frontiersin.org/articles/10.3389/fninf.2023.1271059/pdf?isPublishedV2=False","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5027837253","display_name":"Luca Bologna","orcid":"https://orcid.org/0000-0002-7280-9285"},"institutions":[{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"funder","lineage":["https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Luca Leonardo Bologna","raw_affiliation_strings":["Institute of Biophysics, National Research Council, Palermo, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biophysics, National Research Council, Palermo, Italy","institution_ids":["https://openalex.org/I4210155236"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000368481","display_name":"Antonino Tocco","orcid":"https://orcid.org/0000-0002-4457-2348"},"institutions":[{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"funder","lineage":["https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Antonino Tocco","raw_affiliation_strings":["Institute of Biophysics, National Research Council, Palermo, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biophysics, National Research Council, Palermo, Italy","institution_ids":["https://openalex.org/I4210155236"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020776414","display_name":"Roberto Smiriglia","orcid":null},"institutions":[{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"funder","lineage":["https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Roberto Smiriglia","raw_affiliation_strings":["Institute of Biophysics, National Research Council, Palermo, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biophysics, National Research Council, Palermo, Italy","institution_ids":["https://openalex.org/I4210155236"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048653102","display_name":"Armando Romani","orcid":"https://orcid.org/0000-0001-6388-4286"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Armando Romani","raw_affiliation_strings":["Blue Brain Project, \u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne, Geneva, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Blue Brain Project, \u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne, Geneva, Switzerland","institution_ids":["https://openalex.org/I5124864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088028124","display_name":"Felix Sch\u00fcrmann","orcid":null},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Felix Sch\u00fcrmann","raw_affiliation_strings":["Blue Brain Project, \u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne, Geneva, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Blue Brain Project, \u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne, Geneva, Switzerland","institution_ids":["https://openalex.org/I5124864"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084672179","display_name":"Michele Migliore","orcid":"https://orcid.org/0000-0002-7584-6292"},"institutions":[{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"funder","lineage":["https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Michele Migliore","raw_affiliation_strings":["Institute of Biophysics, National Research Council, Palermo, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biophysics, National Research Council, Palermo, Italy","institution_ids":["https://openalex.org/I4210155236"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5027837253"],"corresponding_institution_ids":["https://openalex.org/I4210155236"],"apc_list":{"value":2950,"currency":"USD","value_usd":2950},"apc_paid":{"value":2950,"currency":"USD","value_usd":2950},"fwci":0.1266,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.45544563,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":98},"biblio":{"volume":"17","issue":null,"first_page":"1271059","last_page":"1271059"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10502","display_name":"Advanced Memory and Neural Computing","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/2208","display_name":"Electrical and Electronic Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10502","display_name":"Advanced Memory and Neural Computing","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/2208","display_name":"Electrical and Electronic Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10581","display_name":"Neural dynamics and brain function","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8289250135421753},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6715081930160522},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.6505646109580994},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6168650388717651},{"id":"https://openalex.org/keywords/novelty","display_name":"Novelty","score":0.5283299684524536},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.44886624813079834},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.39096781611442566},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2817588448524475},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.22437462210655212}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8289250135421753},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6715081930160522},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.6505646109580994},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6168650388717651},{"id":"https://openalex.org/C2778738651","wikidata":"https://www.wikidata.org/wiki/Q16546687","display_name":"Novelty","level":2,"score":0.5283299684524536},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.44886624813079834},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.39096781611442566},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2817588448524475},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.22437462210655212},{"id":"https://openalex.org/C27206212","wikidata":"https://www.wikidata.org/wiki/Q34178","display_name":"Theology","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.3389/fninf.2023.1271059","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fninf.2023.1271059","pdf_url":"https://www.frontiersin.org/articles/10.3389/fninf.2023.1271059/pdf?isPublishedV2=False","source":{"id":"https://openalex.org/S179816892","display_name":"Frontiers in Neuroinformatics","issn_l":"1662-5196","issn":["1662-5196"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Neuroinformatics","raw_type":"journal-article"},{"id":"pmid:38025966","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38025966","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in neuroinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10646550","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10646550","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10646550/pdf/fninf-17-1271059.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Front Neuroinform","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:361d5965719540b2982aa5b2162406ff","is_oa":true,"landing_page_url":"https://doaj.org/article/361d5965719540b2982aa5b2162406ff","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Neuroinformatics, Vol 17 (2023)","raw_type":"article"},{"id":"pmh:oai:infoscience.epfl.ch:307220","is_oa":true,"landing_page_url":"https://infoscience.epfl.ch/handle/20.500.14299/203044","pdf_url":null,"source":{"id":"https://openalex.org/S4306400487","display_name":"Infoscience (Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"research article"}],"best_oa_location":{"id":"doi:10.3389/fninf.2023.1271059","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fninf.2023.1271059","pdf_url":"https://www.frontiersin.org/articles/10.3389/fninf.2023.1271059/pdf?isPublishedV2=False","source":{"id":"https://openalex.org/S179816892","display_name":"Frontiers in Neuroinformatics","issn_l":"1662-5196","issn":["1662-5196"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Neuroinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.41999998688697815}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4388126249.pdf"},"referenced_works_count":41,"referenced_works":["https://openalex.org/W1532842753","https://openalex.org/W1974267840","https://openalex.org/W1984374486","https://openalex.org/W1996728217","https://openalex.org/W2018027127","https://openalex.org/W2052645147","https://openalex.org/W2062450961","https://openalex.org/W2087861759","https://openalex.org/W2097560155","https://openalex.org/W2117120818","https://openalex.org/W2127950479","https://openalex.org/W2138281354","https://openalex.org/W2140886546","https://openalex.org/W2157239334","https://openalex.org/W2164653071","https://openalex.org/W2167490703","https://openalex.org/W2168779967","https://openalex.org/W2338375276","https://openalex.org/W2414607342","https://openalex.org/W2475873741","https://openalex.org/W2520514017","https://openalex.org/W2548021123","https://openalex.org/W2789873027","https://openalex.org/W2889897651","https://openalex.org/W2890270531","https://openalex.org/W2945174113","https://openalex.org/W2950613784","https://openalex.org/W2980791559","https://openalex.org/W3033076184","https://openalex.org/W3093383231","https://openalex.org/W3099967679","https://openalex.org/W3121299021","https://openalex.org/W3194963048","https://openalex.org/W4214775604","https://openalex.org/W4226248652","https://openalex.org/W4238614602","https://openalex.org/W4292549355","https://openalex.org/W4297243067","https://openalex.org/W4323031799","https://openalex.org/W4360612468","https://openalex.org/W4385856557"],"related_works":["https://openalex.org/W2381242807","https://openalex.org/W2751208925","https://openalex.org/W2347541121","https://openalex.org/W4288804799","https://openalex.org/W3089617106","https://openalex.org/W3032237421","https://openalex.org/W2080951048","https://openalex.org/W3011883280","https://openalex.org/W2390346111","https://openalex.org/W2369082698"],"abstract_inverted_index":{"To":[0],"build":[1],"biophysically":[2,155],"detailed":[3],"models":[4,67,89,105,159,188],"of":[5,55,74,154,160,172,202,210,218,234,244,260,292],"brain":[6],"cells,":[7,162],"circuits,":[8],"and":[9,36,68,77,87,95,104,120,127,138,144,156,187,194,212,251,254,286],"regions,":[10],"a":[11,22,42,60,203,225,261,267,271,287],"data-driven":[12,262],"approach":[13],"is":[14,101,111,214],"increasingly":[15],"being":[16],"adopted.":[17],"This":[18],"helps":[19],"to":[20,37,64,113,125,283],"obtain":[21],"simulated":[23],"activity":[24],"that":[25,184],"reproduces":[26],"the":[27,39,50,53,62,72,82,152,169,173,182,199,215,219,231,242,258,284,293,299],"experimentally":[28],"recorded":[29],"neural":[30,56,66,88,132,249],"dynamics":[31],"as":[32,34,81,198],"faithfully":[33],"possible,":[35],"turn":[38],"model":[40,136,206,252,272],"into":[41],"useful":[43],"framework":[44,288],"for":[45,179,289],"making":[46],"predictions":[47],"based":[48],"on":[49,141,151,181],"principles":[51],"governing":[52],"nature":[54],"cells.":[57],"In":[58],"such":[59],"context,":[61],"access":[63],"existing":[65],"data":[69,103,133,186,213],"outstandingly":[70],"facilitates":[71],"work":[73,220],"computational":[75],"neuroscientists":[76],"fosters":[78],"its":[79],"novelty,":[80],"scientific":[83,177],"community":[84],"grows":[85],"wider":[86],"progressively":[90],"increase":[91],"in":[92],"type,":[93],"size,":[94],"number.":[96],"Nonetheless,":[97],"even":[98],"when":[99],"accessibility":[100],"guaranteed,":[102],"are":[106,122,222],"rarely":[107],"reused":[108],"since":[109],"it":[110],"difficult":[112],"retrieve,":[114],"extract":[115],"and/or":[116],"understand":[117],"relevant":[118],"information":[119],"scientists":[121],"often":[123],"required":[124],"download":[126],"modify":[128],"individual":[129],"files,":[130],"perform":[131],"analysis,":[134],"optimize":[135],"parameters,":[137],"run":[139],"simulations,":[140],"their":[142,146,196],"own":[143,147],"with":[145,257],"resources.":[148],"While":[149],"focusing":[150],"construction":[153,259],"morphologically":[157],"accurate":[158],"hippocampal":[161,263],"we":[163,221],"have":[164],"created":[165],"an":[166,235],"online":[167,191,236,304],"resource,":[168],"Build":[170],"section":[171],"Hippocampus":[174],"Hub":[175],"-a":[176],"portal":[178],"research":[180],"hippocampus-":[183],"gathers":[185],"from":[189],"different":[190],"open":[192],"repositories":[193],"allows":[195],"collection":[197],"first":[200],"step":[201],"single":[204],"cell":[205],"building":[207],"workflow.":[208],"Interoperability":[209],"tools":[211],"key":[216],"feature":[217],"presenting.":[223],"Through":[224],"simple":[226],"click-and-collect":[227],"procedure,":[228],"like":[229],"filling":[230],"shopping":[232],"cart":[233],"store,":[237],"researchers":[238],"can":[239],"intuitively":[240],"select":[241],"files":[243],"interest":[245],"(i.e.,":[246],"electrophysiological":[247],"recordings,":[248],"morphology,":[250],"components),":[253],"get":[255],"started":[256],"neuron":[264],"model.":[265],"Such":[266],"workflow":[268],"importantly":[269],"includes":[270],"optimization":[273],"process,":[274],"which":[275],"leverages":[276],"high":[277],"performance":[278],"computing":[279],"resources":[280],"transparently":[281],"granted":[282],"users,":[285],"running":[290],"simulations":[291],"optimized":[294],"model,":[295],"both":[296],"available":[297],"through":[298],"EBRAINS":[300],"Hodgkin-Huxley":[301],"Neuron":[302],"Builder":[303],"tool.":[305]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}