{"id":"https://openalex.org/W2800485751","doi":"https://doi.org/10.3389/fninf.2018.00020","title":"Challenges in Reproducibility, Replicability, and Comparability of Computational Models and Tools for Neuronal and Glial Networks, Cells, and Subcellular Structures","display_name":"Challenges in Reproducibility, Replicability, and Comparability of Computational Models and Tools for Neuronal and Glial Networks, Cells, and Subcellular Structures","publication_year":2018,"publication_date":"2018-05-01","ids":{"openalex":"https://openalex.org/W2800485751","doi":"https://doi.org/10.3389/fninf.2018.00020","mag":"2800485751","pmid":"https://pubmed.ncbi.nlm.nih.gov/29765315"},"language":"en","primary_location":{"id":"doi:10.3389/fninf.2018.00020","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fninf.2018.00020","pdf_url":"https://www.frontiersin.org/articles/10.3389/fninf.2018.00020/pdf","source":{"id":"https://openalex.org/S179816892","display_name":"Frontiers in Neuroinformatics","issn_l":"1662-5196","issn":["1662-5196"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Neuroinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.frontiersin.org/articles/10.3389/fninf.2018.00020/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5037580924","display_name":"Tiina Manninen","orcid":"https://orcid.org/0000-0002-0456-1185"},"institutions":[{"id":"https://openalex.org/I166825849","display_name":"Tampere University","ror":"https://ror.org/033003e23","country_code":"FI","type":"education","lineage":["https://openalex.org/I166825849"]},{"id":"https://openalex.org/I4210133110","display_name":"Tampere University","ror":null,"country_code":"FI","type":null,"lineage":["https://openalex.org/I4210133110"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Tiina Manninen","raw_affiliation_strings":["Computational Neuroscience Group, BioMediTech Institute and Faculty of Biomedical Sciences and Engineering, Tampere University of Technology, Tampere, Finland","Laboratory of Signal Processing, Tampere University of Technology, Tampere, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Neuroscience Group, BioMediTech Institute and Faculty of Biomedical Sciences and Engineering, Tampere University of Technology, Tampere, Finland","institution_ids":["https://openalex.org/I4210133110"]},{"raw_affiliation_string":"Laboratory of Signal Processing, Tampere University of Technology, Tampere, Finland","institution_ids":["https://openalex.org/I166825849","https://openalex.org/I4210133110"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083766231","display_name":"Jugoslava A\u0107imovi\u0107","orcid":"https://orcid.org/0000-0001-5216-681X"},"institutions":[{"id":"https://openalex.org/I166825849","display_name":"Tampere University","ror":"https://ror.org/033003e23","country_code":"FI","type":"education","lineage":["https://openalex.org/I166825849"]},{"id":"https://openalex.org/I4210133110","display_name":"Tampere University","ror":null,"country_code":"FI","type":null,"lineage":["https://openalex.org/I4210133110"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Jugoslava A\u0107imovi\u0107","raw_affiliation_strings":["Computational Neuroscience Group, BioMediTech Institute and Faculty of Biomedical Sciences and Engineering, Tampere University of Technology, Tampere, Finland","Laboratory of Signal Processing, Tampere University of Technology, Tampere, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Neuroscience Group, BioMediTech Institute and Faculty of Biomedical Sciences and Engineering, Tampere University of Technology, Tampere, Finland","institution_ids":["https://openalex.org/I4210133110"]},{"raw_affiliation_string":"Laboratory of Signal Processing, Tampere University of Technology, Tampere, Finland","institution_ids":["https://openalex.org/I166825849","https://openalex.org/I4210133110"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011937259","display_name":"Riikka Havela","orcid":"https://orcid.org/0000-0002-3683-0343"},"institutions":[{"id":"https://openalex.org/I4210133110","display_name":"Tampere University","ror":null,"country_code":"FI","type":null,"lineage":["https://openalex.org/I4210133110"]},{"id":"https://openalex.org/I166825849","display_name":"Tampere University","ror":"https://ror.org/033003e23","country_code":"FI","type":"education","lineage":["https://openalex.org/I166825849"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Riikka Havela","raw_affiliation_strings":["Computational Neuroscience Group, BioMediTech Institute and Faculty of Biomedical Sciences and Engineering, Tampere University of Technology, Tampere, Finland","Laboratory of Signal Processing, Tampere University of Technology, Tampere, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Neuroscience Group, BioMediTech Institute and Faculty of Biomedical Sciences and Engineering, Tampere University of Technology, Tampere, Finland","institution_ids":["https://openalex.org/I4210133110"]},{"raw_affiliation_string":"Laboratory of Signal Processing, Tampere University of Technology, Tampere, Finland","institution_ids":["https://openalex.org/I166825849","https://openalex.org/I4210133110"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021454710","display_name":"Heidi Teppola","orcid":null},"institutions":[{"id":"https://openalex.org/I166825849","display_name":"Tampere University","ror":"https://ror.org/033003e23","country_code":"FI","type":"education","lineage":["https://openalex.org/I166825849"]},{"id":"https://openalex.org/I4210133110","display_name":"Tampere University","ror":null,"country_code":"FI","type":null,"lineage":["https://openalex.org/I4210133110"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Heidi Teppola","raw_affiliation_strings":["Computational Neuroscience Group, BioMediTech Institute and Faculty of Biomedical Sciences and Engineering, Tampere University of Technology, Tampere, Finland","Laboratory of Signal Processing, Tampere University of Technology, Tampere, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Neuroscience Group, BioMediTech Institute and Faculty of Biomedical Sciences and Engineering, Tampere University of Technology, Tampere, Finland","institution_ids":["https://openalex.org/I4210133110"]},{"raw_affiliation_string":"Laboratory of Signal Processing, Tampere University of Technology, Tampere, Finland","institution_ids":["https://openalex.org/I166825849","https://openalex.org/I4210133110"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5008868538","display_name":"Marja\u2010Leena Linne","orcid":"https://orcid.org/0000-0003-2577-7329"},"institutions":[{"id":"https://openalex.org/I166825849","display_name":"Tampere University","ror":"https://ror.org/033003e23","country_code":"FI","type":"education","lineage":["https://openalex.org/I166825849"]},{"id":"https://openalex.org/I4210133110","display_name":"Tampere University","ror":null,"country_code":"FI","type":null,"lineage":["https://openalex.org/I4210133110"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Marja-Leena Linne","raw_affiliation_strings":["Computational Neuroscience Group, BioMediTech Institute and Faculty of Biomedical Sciences and Engineering, Tampere University of Technology, Tampere, Finland","Laboratory of Signal Processing, Tampere University of Technology, Tampere, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Neuroscience Group, BioMediTech Institute and Faculty of Biomedical Sciences and Engineering, Tampere University of Technology, Tampere, Finland","institution_ids":["https://openalex.org/I4210133110"]},{"raw_affiliation_string":"Laboratory of Signal Processing, Tampere University of Technology, Tampere, Finland","institution_ids":["https://openalex.org/I166825849","https://openalex.org/I4210133110"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5008868538","https://openalex.org/A5037580924","https://openalex.org/A5083766231"],"corresponding_institution_ids":["https://openalex.org/I166825849","https://openalex.org/I4210133110"],"apc_list":{"value":2950,"currency":"USD","value_usd":2950},"apc_paid":{"value":2950,"currency":"USD","value_usd":2950},"fwci":1.3919,"has_fulltext":false,"cited_by_count":37,"citation_normalized_percentile":{"value":0.81197746,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"12","issue":null,"first_page":"20","last_page":"20"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/comparability","display_name":"Comparability","score":0.8292840719223022},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7710949182510376},{"id":"https://openalex.org/keywords/computational-model","display_name":"Computational model","score":0.7536395192146301},{"id":"https://openalex.org/keywords/computational-neuroscience","display_name":"Computational neuroscience","score":0.7174509167671204},{"id":"https://openalex.org/keywords/replicate","display_name":"Replicate","score":0.5710009932518005},{"id":"https://openalex.org/keywords/neuroinformatics","display_name":"Neuroinformatics","score":0.5216175317764282},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4769384264945984},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.42936697602272034},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.42257004976272583},{"id":"https://openalex.org/keywords/categorization","display_name":"Categorization","score":0.4214722812175751},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.40939074754714966},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.37296295166015625},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.21164745092391968},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15816211700439453}],"concepts":[{"id":"https://openalex.org/C197947376","wikidata":"https://www.wikidata.org/wiki/Q5155608","display_name":"Comparability","level":2,"score":0.8292840719223022},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7710949182510376},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.7536395192146301},{"id":"https://openalex.org/C15286952","wikidata":"https://www.wikidata.org/wiki/Q8037925","display_name":"Computational neuroscience","level":2,"score":0.7174509167671204},{"id":"https://openalex.org/C2781162219","wikidata":"https://www.wikidata.org/wiki/Q26250693","display_name":"Replicate","level":2,"score":0.5710009932518005},{"id":"https://openalex.org/C205427263","wikidata":"https://www.wikidata.org/wiki/Q1931480","display_name":"Neuroinformatics","level":2,"score":0.5216175317764282},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4769384264945984},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.42936697602272034},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.42257004976272583},{"id":"https://openalex.org/C94124525","wikidata":"https://www.wikidata.org/wiki/Q912550","display_name":"Categorization","level":2,"score":0.4214722812175751},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.40939074754714966},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.37296295166015625},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.21164745092391968},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15816211700439453},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.3389/fninf.2018.00020","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fninf.2018.00020","pdf_url":"https://www.frontiersin.org/articles/10.3389/fninf.2018.00020/pdf","source":{"id":"https://openalex.org/S179816892","display_name":"Frontiers in Neuroinformatics","issn_l":"1662-5196","issn":["1662-5196"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Neuroinformatics","raw_type":"journal-article"},{"id":"pmid:29765315","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29765315","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in neuroinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:8b48d99000e745769a2d8969474ba68d","is_oa":true,"landing_page_url":"https://doaj.org/article/8b48d99000e745769a2d8969474ba68d","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Neuroinformatics, Vol 12 (2018)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:4870162","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5938413","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:trepo.tuni.fi:10024/214596","is_oa":true,"landing_page_url":"https://trepo.tuni.fi/handle/10024/214596","pdf_url":null,"source":{"id":"https://openalex.org/S7407055260","display_name":"Trepo - Institutional Repository of Tampere University","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"doi:10.3389/fninf.2018.00020","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fninf.2018.00020","pdf_url":"https://www.frontiersin.org/articles/10.3389/fninf.2018.00020/pdf","source":{"id":"https://openalex.org/S179816892","display_name":"Frontiers in Neuroinformatics","issn_l":"1662-5196","issn":["1662-5196"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Neuroinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4099999964237213,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G1095062678","display_name":null,"funder_award_id":"604102","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G1163571418","display_name":null,"funder_award_id":"HBP SGA1","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G3860787278","display_name":null,"funder_award_id":"297893","funder_id":"https://openalex.org/F4320321108","funder_display_name":"Academy of Finland"},{"id":"https://openalex.org/G398560324","display_name":null,"funder_award_id":"720270","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5673166571","display_name":null,"funder_award_id":"720270","funder_id":"https://openalex.org/F4320335254","funder_display_name":"Horizon 2020"},{"id":"https://openalex.org/G6181221163","display_name":null,"funder_award_id":"604102","funder_id":"https://openalex.org/F4320333065","funder_display_name":"Seventh Framework Programme"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320321108","display_name":"Academy of Finland","ror":"https://ror.org/05k73zm37"},{"id":"https://openalex.org/F4320321726","display_name":"Suomen Kulttuurirahasto","ror":"https://ror.org/027xav248"},{"id":"https://openalex.org/F4320322861","display_name":"Emil Aaltosen S\u00e4\u00e4ti\u00f6","ror":"https://ror.org/005rt3g54"},{"id":"https://openalex.org/F4320322862","display_name":"Ulla Tuomisen S\u00e4\u00e4ti\u00f6","ror":"https://ror.org/0066s0r72"},{"id":"https://openalex.org/F4320323337","display_name":"Tekniikan Edist\u00e4miss\u00e4\u00e4ti\u00f6","ror":"https://ror.org/03f420b93"},{"id":"https://openalex.org/F4320331436","display_name":"Suomalainen Konkordia-liitto","ror":"https://ror.org/03snntx53"},{"id":"https://openalex.org/F4320333065","display_name":"Seventh Framework Programme","ror":null},{"id":"https://openalex.org/F4320335025","display_name":"Pirkanmaan Rahasto","ror":"https://ror.org/027xav248"},{"id":"https://openalex.org/F4320335254","display_name":"Horizon 2020","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2800485751.pdf","grobid_xml":"https://content.openalex.org/works/W2800485751.grobid-xml"},"referenced_works_count":174,"referenced_works":["https://openalex.org/W19385301","https://openalex.org/W50684321","https://openalex.org/W64130124","https://openalex.org/W181656020","https://openalex.org/W250910456","https://openalex.org/W1121026849","https://openalex.org/W1481371813","https://openalex.org/W1594434247","https://openalex.org/W1797216850","https://openalex.org/W1963861745","https://openalex.org/W1964287788","https://openalex.org/W1968912342","https://openalex.org/W1971117579","https://openalex.org/W1974974415","https://openalex.org/W1978639080","https://openalex.org/W1978957712","https://openalex.org/W1982258483","https://openalex.org/W1984374486","https://openalex.org/W1985940938","https://openalex.org/W1986312757","https://openalex.org/W1989011685","https://openalex.org/W1992293850","https://openalex.org/W1994530392","https://openalex.org/W1998041052","https://openalex.org/W1998084649","https://openalex.org/W1998943779","https://openalex.org/W2000815456","https://openalex.org/W2007711420","https://openalex.org/W2012092070","https://openalex.org/W2018027127","https://openalex.org/W2020125871","https://openalex.org/W2020561965","https://openalex.org/W2026421886","https://openalex.org/W2028180629","https://openalex.org/W2029056405","https://openalex.org/W2032803618","https://openalex.org/W2033844584","https://openalex.org/W2034888816","https://openalex.org/W2036011992","https://openalex.org/W2036435819","https://openalex.org/W2037704797","https://openalex.org/W2041265238","https://openalex.org/W2042321087","https://openalex.org/W2042670485","https://openalex.org/W2042880070","https://openalex.org/W2043679829","https://openalex.org/W2046159149","https://openalex.org/W2046451925","https://openalex.org/W2050077524","https://openalex.org/W2052360207","https://openalex.org/W2055613433","https://openalex.org/W2058624548","https://openalex.org/W2058709617","https://openalex.org/W2059715474","https://openalex.org/W2060896623","https://openalex.org/W2062549338","https://openalex.org/W2063219876","https://openalex.org/W2064354742","https://openalex.org/W2065219357","https://openalex.org/W2066445702","https://openalex.org/W2067501167","https://openalex.org/W2067598670","https://openalex.org/W2067982358","https://openalex.org/W2070311374","https://openalex.org/W2070473949","https://openalex.org/W2071036343","https://openalex.org/W2071938721","https://openalex.org/W2077346271","https://openalex.org/W2081209729","https://openalex.org/W2081635675","https://openalex.org/W2082089816","https://openalex.org/W2082221311","https://openalex.org/W2084924279","https://openalex.org/W2093171848","https://openalex.org/W2095787908","https://openalex.org/W2096551329","https://openalex.org/W2102653059","https://openalex.org/W2102667107","https://openalex.org/W2103563062","https://openalex.org/W2106177108","https://openalex.org/W2107062718","https://openalex.org/W2109386884","https://openalex.org/W2109639508","https://openalex.org/W2110804923","https://openalex.org/W2112750506","https://openalex.org/W2113094198","https://openalex.org/W2113777491","https://openalex.org/W2115343689","https://openalex.org/W2115472127","https://openalex.org/W2115801392","https://openalex.org/W2117297464","https://openalex.org/W2118444707","https://openalex.org/W2122588406","https://openalex.org/W2123783513","https://openalex.org/W2127411502","https://openalex.org/W2127887898","https://openalex.org/W2127950479","https://openalex.org/W2129896258","https://openalex.org/W2130699939","https://openalex.org/W2131636689","https://openalex.org/W2133667940","https://openalex.org/W2134103459","https://openalex.org/W2136621137","https://openalex.org/W2136994190","https://openalex.org/W2137459404","https://openalex.org/W2138059820","https://openalex.org/W2138261199","https://openalex.org/W2138323614","https://openalex.org/W2139513028","https://openalex.org/W2140886546","https://openalex.org/W2142385329","https://openalex.org/W2146189197","https://openalex.org/W2147654946","https://openalex.org/W2149645185","https://openalex.org/W2150386276","https://openalex.org/W2150908245","https://openalex.org/W2150983947","https://openalex.org/W2151542182","https://openalex.org/W2151642870","https://openalex.org/W2155075539","https://openalex.org/W2155418451","https://openalex.org/W2157092518","https://openalex.org/W2157239334","https://openalex.org/W2158691076","https://openalex.org/W2167154952","https://openalex.org/W2171895829","https://openalex.org/W2184272066","https://openalex.org/W2215816474","https://openalex.org/W2267638272","https://openalex.org/W2286139548","https://openalex.org/W2303220852","https://openalex.org/W2320969362","https://openalex.org/W2338149947","https://openalex.org/W2396075472","https://openalex.org/W2406493898","https://openalex.org/W2411881371","https://openalex.org/W2414283705","https://openalex.org/W2471945867","https://openalex.org/W2496032671","https://openalex.org/W2536349837","https://openalex.org/W2548021123","https://openalex.org/W2549020778","https://openalex.org/W2570760970","https://openalex.org/W2586814570","https://openalex.org/W2591218273","https://openalex.org/W2734665458","https://openalex.org/W2741610580","https://openalex.org/W2750943285","https://openalex.org/W2754872557","https://openalex.org/W2757078715","https://openalex.org/W2789816182","https://openalex.org/W2796453918","https://openalex.org/W2949315152","https://openalex.org/W2963964759","https://openalex.org/W3102863256","https://openalex.org/W3146376608","https://openalex.org/W4214775604","https://openalex.org/W4235527302","https://openalex.org/W4236668382","https://openalex.org/W4251506437","https://openalex.org/W6600295013","https://openalex.org/W6603035958","https://openalex.org/W6638343268","https://openalex.org/W6660871582","https://openalex.org/W6668467661","https://openalex.org/W6676450467","https://openalex.org/W6680646713","https://openalex.org/W6682580670","https://openalex.org/W6688727020","https://openalex.org/W6695885715","https://openalex.org/W6723884636","https://openalex.org/W6730451160","https://openalex.org/W6748401160","https://openalex.org/W6758880353"],"related_works":["https://openalex.org/W4390782210","https://openalex.org/W4385769909","https://openalex.org/W1991647999","https://openalex.org/W4252166826","https://openalex.org/W4392133834","https://openalex.org/W2887972576","https://openalex.org/W2162859332","https://openalex.org/W2054414398","https://openalex.org/W2506406097","https://openalex.org/W2340883203"],"abstract_inverted_index":{"The":[0,92],"possibility":[1],"to":[2,34,120,145,154,161,207,222,275],"replicate":[3],"and":[4,64,79,83,94,115,126,167,182,189,194,209,218,245,252,258,298,311],"reproduce":[5],"published":[6,170],"research":[7,157,314],"results":[8,141,171],"is":[9,31],"one":[10,143],"of":[11,18,26,68,72,113,129,138,169,203,254,286,294,313],"the":[12,36,40,43,49,53,66,107,136,139,148,163,177,204,226,255,273,284],"biggest":[13],"challenges":[14,164,235],"in":[15,42,89,118,165,172,229,288],"all":[16],"areas":[17],"science.":[19],"In":[20,159],"computational":[21,100,173,190,211,237,243,289,296],"neuroscience,":[22,174,290],"there":[23],"are":[24,97,103],"thousands":[25],"models":[27,37,50,101,108,150,246,257,270,274,297],"available.":[28,61],"However,":[29],"it":[30],"rarely":[32],"possible":[33],"reimplement":[35],"based":[38],"on":[39,215],"information":[41],"original":[44],"publication,":[45],"let":[46],"alone":[47],"rerun":[48],"just":[51],"because":[52],"model":[54,196],"implementations":[55],"have":[56],"not":[57],"been":[58],"made":[59],"publicly":[60],"We":[62,133],"evaluate":[63],"discuss":[65],"comparability":[67,137],"a":[69,261],"versatile":[70],"choice":[71],"simulation":[73,140,187],"tools:":[74],"tools":[75,86,188,259],"for":[76,87,99,109,179,185,236,263,267],"biochemical":[77],"reactions":[78],"spiking":[80,130],"neuronal":[81,131],"networks,":[82],"relatively":[84],"new":[85,234,242],"growth":[88],"cell":[90],"cultures.":[91],"replicability":[93,168,310],"reproducibility":[95,166,312],"issues":[96],"considered":[98],"that":[102],"equally":[104],"diverse,":[105],"including":[106],"intracellular":[110],"signal":[111],"transduction":[112],"neurons":[114],"glial":[116,122],"cells,":[117,123],"addition":[119,160],"single":[121],"neuron-glia":[124],"interactions,":[125],"selected":[127],"examples":[128],"networks.":[132],"also":[134],"address":[135],"with":[142],"another":[144],"comprehend":[146],"if":[147],"studied":[149],"can":[151,300],"be":[152,199,248,301],"used":[153,206],"answer":[155],"similar":[156],"questions.":[158],"presenting":[162],"we":[175],"highlight":[176],"need":[178],"developing":[180],"recommendations":[181],"good":[183],"practices":[184],"publishing":[186,306],"models.":[191,212],"Model":[192],"validation":[193],"flexible":[195],"description":[197],"must":[198],"an":[200],"integral":[201],"part":[202],"tool":[205],"simulate":[208],"develop":[210],"Constant":[213],"improvement":[214],"experimental":[216],"techniques":[217],"recording":[219],"protocols":[220],"leads":[221],"increasing":[223],"knowledge":[224],"about":[225],"biophysical":[227,281],"mechanisms":[228],"neural":[230],"systems.":[231],"This":[232],"poses":[233],"neuroscience:":[238],"extended":[239],"or":[240,271,278],"completely":[241],"methods":[244],"may":[247],"required.":[249],"Careful":[250],"evaluation":[251],"categorization":[253],"existing":[256],"provide":[260],"foundation":[262],"these":[264],"future":[265],"needs,":[266],"constructing":[268],"multiscale":[269],"extending":[272],"incorporate":[276],"additional":[277],"more":[279],"detailed":[280],"mechanisms.":[282],"Improving":[283],"quality":[285],"publications":[287],"enabling":[291],"progressive":[292],"building":[293],"advanced":[295],"tools,":[299],"achieved":[302],"only":[303],"through":[304],"adopting":[305],"standards":[307],"which":[308],"underline":[309],"results.":[315]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":2}],"updated_date":"2026-05-11T08:15:01.531666","created_date":"2025-10-10T00:00:00"}
