{"id":"https://openalex.org/W1999185738","doi":"https://doi.org/10.3389/fninf.2012.00002","title":"Combining collation and annotation efforts toward completion of the rat and mouse connectomes in BAMS","display_name":"Combining collation and annotation efforts toward completion of the rat and mouse connectomes in BAMS","publication_year":2012,"publication_date":"2012-01-01","ids":{"openalex":"https://openalex.org/W1999185738","doi":"https://doi.org/10.3389/fninf.2012.00002","mag":"1999185738","pmid":"https://pubmed.ncbi.nlm.nih.gov/22403539"},"language":"en","primary_location":{"id":"doi:10.3389/fninf.2012.00002","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fninf.2012.00002","pdf_url":"https://www.frontiersin.org/articles/10.3389/fninf.2012.00002/pdf","source":{"id":"https://openalex.org/S179816892","display_name":"Frontiers in Neuroinformatics","issn_l":"1662-5196","issn":["1662-5196"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Neuroinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.frontiersin.org/articles/10.3389/fninf.2012.00002/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006605981","display_name":"Mihail Bota","orcid":"https://orcid.org/0000-0002-6499-162X"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Mihail Bota","raw_affiliation_strings":["Department of Biological Sciences, University of Southern California, Los Angeles CA, USA","Department of Biological Sciences University of Southern California Los Angeles CA USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, University of Southern California, Los Angeles CA, USA","institution_ids":["https://openalex.org/I1174212"]},{"raw_affiliation_string":"Department of Biological Sciences University of Southern California Los Angeles CA USA","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053879237","display_name":"Hong\u2010Wei Dong","orcid":"https://orcid.org/0000-0001-9972-3177"},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hong-Wei Dong","raw_affiliation_strings":["University of California, Los Angeles, School of Medicine, Los Angeles, Ca, United States","University of California, Los Angeles School of Medicine, Los Angeles, CA, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California, Los Angeles, School of Medicine, Los Angeles, Ca, United States","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"University of California, Los Angeles School of Medicine, Los Angeles, CA, United States","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077038503","display_name":"Larry W. Swanson","orcid":"https://orcid.org/0000-0002-4260-3892"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Larry W. Swanson","raw_affiliation_strings":["University of Southern California, Neurobiology, 3641 Watt Way, HEDCO Neuroscience Bldg, Los Angeles, CA, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Southern California, Neurobiology, 3641 Watt Way, HEDCO Neuroscience Bldg, Los Angeles, CA, United States","institution_ids":["https://openalex.org/I1174212"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5006605981"],"corresponding_institution_ids":["https://openalex.org/I1174212"],"apc_list":{"value":2950,"currency":"USD","value_usd":2950},"apc_paid":{"value":2950,"currency":"USD","value_usd":2950},"fwci":3.9547,"has_fulltext":true,"cited_by_count":51,"citation_normalized_percentile":{"value":0.94360111,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"6","issue":null,"first_page":"2","last_page":"2"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.988099992275238,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.988099992275238,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10448","display_name":"Memory and Neural Mechanisms","score":0.9491999745368958,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9308000206947327,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/collation","display_name":"Collation","score":0.9143096804618835},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.7284401655197144},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5650631785392761},{"id":"https://openalex.org/keywords/connectome","display_name":"Connectome","score":0.5175356268882751},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3941383361816406},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.24457791447639465},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.19491225481033325},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18412697315216064},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.07800298929214478}],"concepts":[{"id":"https://openalex.org/C505175697","wikidata":"https://www.wikidata.org/wiki/Q14953108","display_name":"Collation","level":2,"score":0.9143096804618835},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.7284401655197144},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5650631785392761},{"id":"https://openalex.org/C45715564","wikidata":"https://www.wikidata.org/wiki/Q1292103","display_name":"Connectome","level":3,"score":0.5175356268882751},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3941383361816406},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.24457791447639465},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.19491225481033325},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18412697315216064},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.07800298929214478},{"id":"https://openalex.org/C3018011982","wikidata":"https://www.wikidata.org/wiki/Q7316120","display_name":"Functional connectivity","level":2,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3389/fninf.2012.00002","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fninf.2012.00002","pdf_url":"https://www.frontiersin.org/articles/10.3389/fninf.2012.00002/pdf","source":{"id":"https://openalex.org/S179816892","display_name":"Frontiers in Neuroinformatics","issn_l":"1662-5196","issn":["1662-5196"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Neuroinformatics","raw_type":"journal-article"},{"id":"pmid:22403539","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22403539","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in neuroinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3289393","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3289393","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Front Neuroinform","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:5f82fdcefd8a4d96a9f3ffcfdbabc15d","is_oa":true,"landing_page_url":"https://doaj.org/article/5f82fdcefd8a4d96a9f3ffcfdbabc15d","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Neuroinformatics, Vol 6 (2012)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3389/fninf.2012.00002","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fninf.2012.00002","pdf_url":"https://www.frontiersin.org/articles/10.3389/fninf.2012.00002/pdf","source":{"id":"https://openalex.org/S179816892","display_name":"Frontiers in Neuroinformatics","issn_l":"1662-5196","issn":["1662-5196"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Neuroinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1962986935","display_name":null,"funder_award_id":"R21 MH083180","funder_id":"https://openalex.org/F4320337346","funder_display_name":"National Institute of Mental Health"},{"id":"https://openalex.org/G3169216596","display_name":null,"funder_award_id":"P41RR013642","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4454883016","display_name":null,"funder_award_id":"R56 NS050792","funder_id":"https://openalex.org/F4320337359","funder_display_name":"National Institute of Neurological Disorders and Stroke"},{"id":"https://openalex.org/G5586767532","display_name":null,"funder_award_id":"NS050792","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7553660245","display_name":null,"funder_award_id":"R01 MH094360","funder_id":"https://openalex.org/F4320337346","funder_display_name":"National Institute of Mental Health"},{"id":"https://openalex.org/G8148431032","display_name":null,"funder_award_id":"R01 NS050792","funder_id":"https://openalex.org/F4320337359","funder_display_name":"National Institute of Neurological Disorders and Stroke"},{"id":"https://openalex.org/G8546609974","display_name":null,"funder_award_id":"P41 RR013642","funder_id":"https://openalex.org/F4320337375","funder_display_name":"National Center for Research Resources"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337346","display_name":"National Institute of Mental Health","ror":"https://ror.org/04xeg9z08"},{"id":"https://openalex.org/F4320337359","display_name":"National Institute of Neurological Disorders and Stroke","ror":"https://ror.org/01s5ya894"},{"id":"https://openalex.org/F4320337375","display_name":"National Center for Research Resources","ror":"https://ror.org/04pw6fb54"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1999185738.pdf","grobid_xml":"https://content.openalex.org/works/W1999185738.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W647834761","https://openalex.org/W1550232114","https://openalex.org/W1566743778","https://openalex.org/W1726261545","https://openalex.org/W1963752230","https://openalex.org/W1972878774","https://openalex.org/W1975942563","https://openalex.org/W1978686333","https://openalex.org/W1986297021","https://openalex.org/W1995124264","https://openalex.org/W2005653946","https://openalex.org/W2014141613","https://openalex.org/W2029035945","https://openalex.org/W2036824853","https://openalex.org/W2038806095","https://openalex.org/W2040711722","https://openalex.org/W2040898679","https://openalex.org/W2056265913","https://openalex.org/W2057134406","https://openalex.org/W2059066557","https://openalex.org/W2084019478","https://openalex.org/W2084397284","https://openalex.org/W2088199798","https://openalex.org/W2099792163","https://openalex.org/W2127695105","https://openalex.org/W2133039566","https://openalex.org/W2138223008","https://openalex.org/W2145687948","https://openalex.org/W2146693559","https://openalex.org/W2169315446","https://openalex.org/W3147310958","https://openalex.org/W4247192268","https://openalex.org/W4292666818","https://openalex.org/W6632985190","https://openalex.org/W6634295698","https://openalex.org/W6643344136","https://openalex.org/W6644185396","https://openalex.org/W6646627090","https://openalex.org/W6671782033","https://openalex.org/W6679525315"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2386910960","https://openalex.org/W2388990957","https://openalex.org/W2387546720","https://openalex.org/W2367418752","https://openalex.org/W2354578030","https://openalex.org/W2348687995","https://openalex.org/W2355720236","https://openalex.org/W2371975126","https://openalex.org/W2353491461"],"abstract_inverted_index":{"Many":[0],"different":[1,51,74,92,173,217],"independently":[2],"published":[3],"neuroanatomical":[4,29,75],"parcellation":[5,52,93],"schemes":[6,53,94],"(brain":[7],"maps,":[8],"nomenclatures,":[9],"or":[10,122,125,128],"atlases)":[11],"can":[12],"exist":[13],"for":[14,27,38,87,168,228],"a":[15,32,78,142,206,216,223],"particular":[16,33],"species,":[17],"although":[18],"one":[19],"scheme":[20],"(a":[21],"standard":[22],"scheme)":[23],"is":[24,36,104,161,190,194,213],"typically":[25],"chosen":[26],"mapping":[28,236],"data":[30,62],"in":[31,50,97],"study.":[34],"This":[35],"problematic":[37],"building":[39],"connection":[40,231,251],"matrices":[41],"(connectomes)":[42],"because":[43,192,211],"the":[44,98,133,147,176,183,199],"terms":[45],"used":[46],"to":[47,106],"name":[48],"structures":[49],"differ":[54],"widely":[55],"and":[56,90,113,157,210,226,241,244],"interrelationships":[57],"are":[58,95,116,126],"seldom":[59],"defined.":[60],"Therefore,":[61],"sets":[63],"cannot":[64],"be":[65],"compared":[66],"across":[67],"studies":[68],"that":[69,115],"have":[70],"been":[71],"mapped":[72],"on":[73,108,215],"atlases":[76],"without":[77],"reliable":[79],"translation":[80],"method.":[81],"Because":[82],"resliceable":[83],"3D":[84],"brain":[85],"models":[86],"relating":[88],"systematically":[89],"topographically":[91],"still":[96],"first":[99],"phases":[100],"of":[101,159,175,186,201,237,249],"development,":[102],"it":[103,193,212],"necessary":[105],"rely":[107],"qualitative":[109],"comparisons":[110],"between":[111],"regions":[112],"tracts":[114],"either":[117],"inserted":[118,202],"directly":[119],"by":[120,130],"neuroanatomists":[121],"trained":[123],"annotators,":[124],"extracted":[127],"inferred":[129],"collators":[131],"from":[132],"available":[134,144],"literature.":[135],"To":[136],"address":[137],"these":[138],"challenges,":[139],"we":[140,221],"developed":[141],"publicly":[143],"neuroinformatics":[145],"system,":[146],"Brain":[148],"Architecture":[149],"Knowledge":[150],"Management":[151],"System":[152],"(BAMS;":[153],"http://brancusi.usc.edu/bkms).":[154],"The":[155],"structure":[156],"functionality":[158],"BAMS":[160,187],"briefly":[162],"reviewed":[163],"here,":[164],"as":[165],"an":[166],"exemplar":[167],"constructing":[169],"interrelated":[170],"connectomes":[171],"at":[172],"levels":[174],"mammalian":[177],"central":[178],"nervous":[179],"system":[180],"organization.":[181],"Next,":[182],"latest":[184],"version":[185],"rat":[188],"macroconnectome":[189],"presented":[191],"significantly":[195],"more":[196],"populated":[197],"with":[198,234,246],"number":[200],"connectivity":[203],"reports":[204],"exceeding":[205],"benchmark":[207],"value":[208],"(50,000),":[209],"based":[214],"classification":[218],"scheme.":[219],"Finally,":[220],"discuss":[222],"general":[224],"methodology":[225],"strategy":[227],"producing":[229],"global":[230],"matrices,":[232],"starting":[233],"rigorous":[235],"data,":[238],"then":[239],"inserting":[240],"annotating":[242],"it,":[243],"ending":[245],"online":[247],"generation":[248],"large-scale":[250],"matrices.":[252]},"counts_by_year":[{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":5},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":9},{"year":2014,"cited_by_count":9},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":3}],"updated_date":"2026-06-23T06:36:01.041984","created_date":"2025-10-10T00:00:00"}
