{"id":"https://openalex.org/W2057134406","doi":"https://doi.org/10.3389/fninf.2010.00003","title":"Collating and curating neuroanatomical nomenclatures: principles and use of the Brain Architecture Knowledge Management System (BAMS)","display_name":"Collating and curating neuroanatomical nomenclatures: principles and use of the Brain Architecture Knowledge Management System (BAMS)","publication_year":2010,"publication_date":"2010-01-01","ids":{"openalex":"https://openalex.org/W2057134406","doi":"https://doi.org/10.3389/fninf.2010.00003","mag":"2057134406","pmid":"https://pubmed.ncbi.nlm.nih.gov/20407640"},"language":"en","primary_location":{"id":"doi:10.3389/fninf.2010.00003","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fninf.2010.00003","pdf_url":"https://www.frontiersin.org/articles/10.3389/fninf.2010.00003/pdf","source":{"id":"https://openalex.org/S179816892","display_name":"Frontiers in Neuroinformatics","issn_l":"1662-5196","issn":["1662-5196"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Neuroinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.frontiersin.org/articles/10.3389/fninf.2010.00003/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006605981","display_name":"Mihail Bota","orcid":"https://orcid.org/0000-0002-6499-162X"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Mihail Bota","raw_affiliation_strings":["Department of Biological Sciences, University of Southern California Los Angeles, CA, USA","Department of Biological Sciences University of Southern California Los Angeles CA USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, University of Southern California Los Angeles, CA, USA","institution_ids":["https://openalex.org/I1174212"]},{"raw_affiliation_string":"Department of Biological Sciences University of Southern California Los Angeles CA USA","institution_ids":["https://openalex.org/I1174212"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5006605981"],"corresponding_institution_ids":["https://openalex.org/I1174212"],"apc_list":{"value":3295,"currency":"USD","value_usd":3295},"apc_paid":{"value":3295,"currency":"USD","value_usd":3295},"fwci":1.9913,"has_fulltext":true,"cited_by_count":40,"citation_normalized_percentile":{"value":0.85959413,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"4","issue":null,"first_page":"3","last_page":"3"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9424999952316284,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9405999779701233,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6736797094345093},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.6297674775123596},{"id":"https://openalex.org/keywords/neuroinformatics","display_name":"Neuroinformatics","score":0.5327686667442322},{"id":"https://openalex.org/keywords/terminology","display_name":"Terminology","score":0.5300937294960022},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.47518885135650635},{"id":"https://openalex.org/keywords/schema","display_name":"Schema (genetic algorithms)","score":0.47134846448898315},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.44093045592308044},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3642617464065552},{"id":"https://openalex.org/keywords/cognitive-science","display_name":"Cognitive science","score":0.33181649446487427},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.21027988195419312},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.12483453750610352},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.11298403143882751},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.10606124997138977}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6736797094345093},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.6297674775123596},{"id":"https://openalex.org/C205427263","wikidata":"https://www.wikidata.org/wiki/Q1931480","display_name":"Neuroinformatics","level":2,"score":0.5327686667442322},{"id":"https://openalex.org/C547195049","wikidata":"https://www.wikidata.org/wiki/Q1725664","display_name":"Terminology","level":2,"score":0.5300937294960022},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.47518885135650635},{"id":"https://openalex.org/C52146309","wikidata":"https://www.wikidata.org/wiki/Q7431116","display_name":"Schema (genetic algorithms)","level":2,"score":0.47134846448898315},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.44093045592308044},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3642617464065552},{"id":"https://openalex.org/C188147891","wikidata":"https://www.wikidata.org/wiki/Q147638","display_name":"Cognitive science","level":1,"score":0.33181649446487427},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.21027988195419312},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.12483453750610352},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.11298403143882751},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.10606124997138977},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3389/fninf.2010.00003","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fninf.2010.00003","pdf_url":"https://www.frontiersin.org/articles/10.3389/fninf.2010.00003/pdf","source":{"id":"https://openalex.org/S179816892","display_name":"Frontiers in Neuroinformatics","issn_l":"1662-5196","issn":["1662-5196"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Neuroinformatics","raw_type":"journal-article"},{"id":"pmid:20407640","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20407640","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in neuroinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:76a5cd67d3c5421d9893fb113d3b4c6c","is_oa":false,"landing_page_url":"https://doaj.org/article/76a5cd67d3c5421d9893fb113d3b4c6c","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Neuroinformatics, Vol 4 (2010)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2856634","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2856634","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Front Neuroinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3389/fninf.2010.00003","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fninf.2010.00003","pdf_url":"https://www.frontiersin.org/articles/10.3389/fninf.2010.00003/pdf","source":{"id":"https://openalex.org/S179816892","display_name":"Frontiers in Neuroinformatics","issn_l":"1662-5196","issn":["1662-5196"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Neuroinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G8148431032","display_name":null,"funder_award_id":"R01 NS050792","funder_id":"https://openalex.org/F4320337359","funder_display_name":"National Institute of Neurological Disorders and Stroke"}],"funders":[{"id":"https://openalex.org/F4320337359","display_name":"National Institute of Neurological Disorders and Stroke","ror":"https://ror.org/01s5ya894"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2057134406.pdf","grobid_xml":"https://content.openalex.org/works/W2057134406.grobid-xml"},"referenced_works_count":53,"referenced_works":["https://openalex.org/W111713383","https://openalex.org/W396132310","https://openalex.org/W1498891976","https://openalex.org/W1526596922","https://openalex.org/W1536434041","https://openalex.org/W1566743778","https://openalex.org/W1965865206","https://openalex.org/W1968722545","https://openalex.org/W1972878774","https://openalex.org/W1975942563","https://openalex.org/W1986017913","https://openalex.org/W1986297021","https://openalex.org/W1988718994","https://openalex.org/W2001914359","https://openalex.org/W2004884668","https://openalex.org/W2005653946","https://openalex.org/W2008106418","https://openalex.org/W2014510234","https://openalex.org/W2014823164","https://openalex.org/W2021178076","https://openalex.org/W2023262819","https://openalex.org/W2025997572","https://openalex.org/W2028425183","https://openalex.org/W2029035945","https://openalex.org/W2040898679","https://openalex.org/W2044857185","https://openalex.org/W2052128851","https://openalex.org/W2053855805","https://openalex.org/W2054950553","https://openalex.org/W2059577220","https://openalex.org/W2061478482","https://openalex.org/W2063960402","https://openalex.org/W2064025050","https://openalex.org/W2068418603","https://openalex.org/W2084019478","https://openalex.org/W2085582971","https://openalex.org/W2090282154","https://openalex.org/W2090399399","https://openalex.org/W2098580305","https://openalex.org/W2115125829","https://openalex.org/W2133039566","https://openalex.org/W2163815564","https://openalex.org/W2478105218","https://openalex.org/W2610592248","https://openalex.org/W2914789322","https://openalex.org/W4238387639","https://openalex.org/W4241943142","https://openalex.org/W4247192268","https://openalex.org/W6604652669","https://openalex.org/W6634295698","https://openalex.org/W6653452750","https://openalex.org/W6679525315","https://openalex.org/W7033452965"],"related_works":["https://openalex.org/W1997225928","https://openalex.org/W4252762947","https://openalex.org/W2085671670","https://openalex.org/W2053925947","https://openalex.org/W1993597101","https://openalex.org/W1991764069","https://openalex.org/W2027016811","https://openalex.org/W584033417","https://openalex.org/W2356374322","https://openalex.org/W2728147905"],"abstract_inverted_index":{"Terms":[0],"used":[1,244,253],"to":[2,71,120,167,178,204,245,257],"describe":[3,258],"nervous":[4,57],"system":[5,58],"parts":[6,59,213],"and":[7,16,67,74,107,198,223],"their":[8],"interconnections":[9],"are":[10],"rife":[11],"with":[12,158,209,238],"synonyms,":[13],"partial":[14],"correspondences,":[15],"even":[17],"homonyms,":[18],"making":[19],"effective":[20],"scientific":[21],"communication":[22],"unnecessarily":[23],"difficult.":[24],"To":[25,115],"address":[26],"this":[27,87],"problem":[28],"a":[29,49,89,131,162,247],"new":[30],"Topological":[31],"Relations":[32,36],"schema":[33,133],"for":[34,96,134,152,212],"the":[35,52,77,97,121,137,153,186,192,255,261],"module":[37],"of":[38,51,80,136,185,191,234,251,260],"BAMS":[39,98,117],"(Brain":[40],"Architecture":[41],"Knowledge":[42],"Management":[43],"System)":[44],"was":[45,94,165,236,243],"created.":[46],"It":[47],"includes":[48],"representation":[50],"qualitative":[53,218],"spatial":[54,229],"relations":[55,146,220,230,252],"between":[56,147,221,231],"defined":[60],"in":[61,254],"different":[62,200],"neuroanatomical":[63,103,139],"nomenclatures":[64,111,201],"or":[65,83,171],"atlases":[66],"is":[68],"general":[69],"enough":[70],"record":[72],"data":[73],"metadata":[75],"from":[76,112,202],"literature,":[78],"regardless":[79],"description":[81],"level":[82],"species.":[84],"Based":[85],"on":[86],"foundation":[88],"Projections":[90],"Translations":[91],"inference":[92],"engine":[93],"developed":[95],"interface":[99],"that":[100],"automatically":[101],"translates":[102],"projection":[104],"(axonal":[105],"inputs":[106],"outputs)":[108],"reports":[109],"across":[110],"translated":[113,138],"information.":[114],"make":[116],"more":[118,142,224],"useful":[119],"neuroscience":[122],"community":[123],"three":[124],"things":[125],"were":[126,155,196,206],"done.":[127],"First,":[128],"we":[129],"implemented":[130],"simple":[132],"validation":[135],"projections.":[140],"Second,":[141],"than":[143,225],"1,000":[144],"topological":[145,219],"brain":[148],"gray":[149,182],"matter":[150,183,215],"regions":[151],"rat":[154,262],"inserted,":[156],"along":[157,208],"associated":[159],"details.":[160],"Finally,":[161],"case":[163],"study":[164],"performed":[166],"enter":[168],"all":[169,233],"historical":[170],"legacy":[172],"published":[173],"information":[174,242],"about":[175,228],"terminology":[176],"related":[177],"one":[179],"relatively":[180],"complex":[181],"region":[184],"rat.":[187],"The":[188],"bed":[189],"nuclei":[190],"stria":[193],"terminalis":[194],"(BST)":[195],"chosen":[197],"21":[199],"1923":[203],"present":[205],"collated,":[207],"284":[210],"terms":[211],"(gray":[214],"differentiations),":[216],"360":[217],"parts,":[222,232],"7,000":[226],"details":[227],"which":[235],"annotated":[237],"appropriate":[239],"metadata.":[240],"This":[241],"construct":[246],"graphical":[248],"\"knowledge":[249],"map\"":[250],"literature":[256],"subdivisions":[259],"BST.":[263]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":4}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
