{"id":"https://openalex.org/W4365449073","doi":"https://doi.org/10.3389/fncom.2023.1068150","title":"Dynamics of a model for the degradation mechanism of aggregated \u03b1-synuclein in Parkinson's disease","display_name":"Dynamics of a model for the degradation mechanism of aggregated \u03b1-synuclein in Parkinson's disease","publication_year":2023,"publication_date":"2023-04-13","ids":{"openalex":"https://openalex.org/W4365449073","doi":"https://doi.org/10.3389/fncom.2023.1068150","pmid":"https://pubmed.ncbi.nlm.nih.gov/37122994"},"language":"en","primary_location":{"id":"doi:10.3389/fncom.2023.1068150","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fncom.2023.1068150","pdf_url":"https://www.frontiersin.org/articles/10.3389/fncom.2023.1068150/pdf","source":{"id":"https://openalex.org/S19778766","display_name":"Frontiers in Computational Neuroscience","issn_l":"1662-5188","issn":["1662-5188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Computational Neuroscience","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.frontiersin.org/articles/10.3389/fncom.2023.1068150/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5034485493","display_name":"Bojie Yang","orcid":null},"institutions":[{"id":"https://openalex.org/I82880672","display_name":"Beihang University","ror":"https://ror.org/00wk2mp56","country_code":"CN","type":"education","lineage":["https://openalex.org/I82880672"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bojie Yang","raw_affiliation_strings":["School of Mathematical Sciences and LMIB, Beihang University, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Mathematical Sciences and LMIB, Beihang University, Beijing, China","institution_ids":["https://openalex.org/I82880672"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000979761","display_name":"Zhuoqin Yang","orcid":"https://orcid.org/0000-0003-0311-644X"},"institutions":[{"id":"https://openalex.org/I82880672","display_name":"Beihang University","ror":"https://ror.org/00wk2mp56","country_code":"CN","type":"education","lineage":["https://openalex.org/I82880672"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zhuoqin Yang","raw_affiliation_strings":["School of Mathematical Sciences and LMIB, Beihang University, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Mathematical Sciences and LMIB, Beihang University, Beijing, China","institution_ids":["https://openalex.org/I82880672"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5033814224","display_name":"Lijie Hao","orcid":"https://orcid.org/0000-0002-3590-4099"},"institutions":[{"id":"https://openalex.org/I15062923","display_name":"Tianjin Normal University","ror":"https://ror.org/05x2td559","country_code":"CN","type":"education","lineage":["https://openalex.org/I15062923"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lijie Hao","raw_affiliation_strings":["School of Mathematics Science, Tianjin Normal University, Tianjin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Mathematics Science, Tianjin Normal University, Tianjin, China","institution_ids":["https://openalex.org/I15062923"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5000979761"],"corresponding_institution_ids":["https://openalex.org/I82880672"],"apc_list":{"value":2950,"currency":"USD","value_usd":2950},"apc_paid":{"value":2950,"currency":"USD","value_usd":2950},"fwci":1.3521,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.81080674,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"17","issue":null,"first_page":"1068150","last_page":"1068150"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10085","display_name":"Parkinson's Disease Mechanisms and Treatments","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2728","display_name":"Neurology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10085","display_name":"Parkinson's Disease Mechanisms and Treatments","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2728","display_name":"Neurology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12023","display_name":"Cholinesterase and Neurodegenerative Diseases","score":0.9488000273704529,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10086","display_name":"Alzheimer's disease research and treatments","score":0.9449999928474426,"subfield":{"id":"https://openalex.org/subfields/2737","display_name":"Physiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mechanism","display_name":"Mechanism (biology)","score":0.7686814069747925},{"id":"https://openalex.org/keywords/parkinsons-disease","display_name":"Parkinson's disease","score":0.7398914098739624},{"id":"https://openalex.org/keywords/alpha-synuclein","display_name":"Alpha-synuclein","score":0.6163661479949951},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.5627768635749817},{"id":"https://openalex.org/keywords/degradation","display_name":"Degradation (telecommunications)","score":0.5494862198829651},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.4755277931690216},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2841669023036957},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.24163231253623962},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.2303917407989502},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.17977440357208252},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.13215255737304688}],"concepts":[{"id":"https://openalex.org/C89611455","wikidata":"https://www.wikidata.org/wiki/Q6804646","display_name":"Mechanism (biology)","level":2,"score":0.7686814069747925},{"id":"https://openalex.org/C2779734285","wikidata":"https://www.wikidata.org/wiki/Q11085","display_name":"Parkinson's disease","level":3,"score":0.7398914098739624},{"id":"https://openalex.org/C2781449126","wikidata":"https://www.wikidata.org/wiki/Q288591","display_name":"Alpha-synuclein","level":4,"score":0.6163661479949951},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.5627768635749817},{"id":"https://openalex.org/C2779679103","wikidata":"https://www.wikidata.org/wiki/Q5251805","display_name":"Degradation (telecommunications)","level":2,"score":0.5494862198829651},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.4755277931690216},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2841669023036957},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.24163231253623962},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.2303917407989502},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.17977440357208252},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.13215255737304688},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3389/fncom.2023.1068150","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fncom.2023.1068150","pdf_url":"https://www.frontiersin.org/articles/10.3389/fncom.2023.1068150/pdf","source":{"id":"https://openalex.org/S19778766","display_name":"Frontiers in Computational Neuroscience","issn_l":"1662-5188","issn":["1662-5188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Computational Neuroscience","raw_type":"journal-article"},{"id":"pmid:37122994","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37122994","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in computational neuroscience","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10133481","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10133481","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10133481/pdf/fncom-17-1068150.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Front Comput Neurosci","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:bb6cd206fe2d46acbd1e7e7d27e54e7f","is_oa":true,"landing_page_url":"https://doaj.org/article/bb6cd206fe2d46acbd1e7e7d27e54e7f","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Computational Neuroscience, Vol 17 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3389/fncom.2023.1068150","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fncom.2023.1068150","pdf_url":"https://www.frontiersin.org/articles/10.3389/fncom.2023.1068150/pdf","source":{"id":"https://openalex.org/S19778766","display_name":"Frontiers in Computational Neuroscience","issn_l":"1662-5188","issn":["1662-5188"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Computational Neuroscience","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3796867655","display_name":"\u7a81\u89e6\u7279\u5f02\u6027\u548c\u57fa\u56e0\u8868\u8fbe\u5bf9\u8bb0\u5fc6\u5f62\u6210\u7684\u8c03\u63a7\u673a\u5236\u5efa\u6a21\u4e0e\u52a8\u529b\u5b66\u7814\u7a76","funder_award_id":"11902221","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7187978467","display_name":"\u4e0e\u5927\u8111\u529f\u80fd\u4e0e\u7cbe\u795e\u969c\u788d\u6709\u5173\u7684\u591a\u5c42\u6b21\u591a\u5c3a\u5ea6\u6a21\u578b\u7684\u5efa\u7acb\u4e0e\u52a8\u529b\u5b66\u7814\u7a76","funder_award_id":"11872084","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7318288956","display_name":null,"funder_award_id":"11932003","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4365449073.pdf"},"referenced_works_count":57,"referenced_works":["https://openalex.org/W1539334271","https://openalex.org/W1678768103","https://openalex.org/W1935781822","https://openalex.org/W1964184380","https://openalex.org/W1975396085","https://openalex.org/W1976161806","https://openalex.org/W1981571161","https://openalex.org/W1985632366","https://openalex.org/W1990844894","https://openalex.org/W1993138738","https://openalex.org/W1997355141","https://openalex.org/W2002636911","https://openalex.org/W2003738638","https://openalex.org/W2012068653","https://openalex.org/W2012259571","https://openalex.org/W2023096029","https://openalex.org/W2026540426","https://openalex.org/W2034252839","https://openalex.org/W2037382204","https://openalex.org/W2037640066","https://openalex.org/W2038356902","https://openalex.org/W2040898837","https://openalex.org/W2055787780","https://openalex.org/W2062686313","https://openalex.org/W2080091995","https://openalex.org/W2085270307","https://openalex.org/W2088198588","https://openalex.org/W2089522371","https://openalex.org/W2096651985","https://openalex.org/W2118959823","https://openalex.org/W2126003957","https://openalex.org/W2164634147","https://openalex.org/W2411905225","https://openalex.org/W2620745816","https://openalex.org/W2626543431","https://openalex.org/W2733397209","https://openalex.org/W2764162783","https://openalex.org/W2769103303","https://openalex.org/W2790799100","https://openalex.org/W2794137713","https://openalex.org/W2799937264","https://openalex.org/W2802580230","https://openalex.org/W2836440195","https://openalex.org/W2904422990","https://openalex.org/W2907471989","https://openalex.org/W2914591781","https://openalex.org/W2926714285","https://openalex.org/W2991435795","https://openalex.org/W3011306000","https://openalex.org/W3111215165","https://openalex.org/W3117375775","https://openalex.org/W3123754262","https://openalex.org/W3159090058","https://openalex.org/W3171689539","https://openalex.org/W4200150957","https://openalex.org/W4232212213","https://openalex.org/W4293199546"],"related_works":["https://openalex.org/W2382997850","https://openalex.org/W2390968135","https://openalex.org/W2382213751","https://openalex.org/W2351750670","https://openalex.org/W2029174044","https://openalex.org/W4401621282","https://openalex.org/W2799562270","https://openalex.org/W3009999791","https://openalex.org/W803885568","https://openalex.org/W4395676997"],"abstract_inverted_index":{"Accumulation":[0],"of":[1,13,55,64,72,126,129,150,182,199,203],"the":[2,24,31,39,53,61,70,89,93,103,123,127,143,148,151,155,160,178,183,200],"misfolded":[3],"synaptic":[4],"protein":[5],"\u03b1-synuclein":[6],"(\u03b1Syn":[7],"*":[8,41,57,74,100,131],")":[9],"is":[10,36,50,75,86,174],"a":[11,47,139,190],"hallmark":[12],"neurodegenerative":[14],"disease":[15,18],"in":[16,38,83,206],"Parkinson's":[17],"(PD).":[19],"Recent":[20],"studies":[21],"suggest":[22],"that":[23,171],"autophagy":[25],"lysosome":[26],"pathway":[27],"(ALP)":[28],"including":[29],"both":[30],"Beclin1-associated":[32],"and":[33,95,115,197],"mTOR-signaling":[34],"pathways":[35],"involved":[37],"\u03b1Syn":[40,56,73,99,130],"clearance":[42],"mechanism.":[43],"In":[44],"this":[45],"study,":[46],"mathematical":[48],"model":[49],"proposed":[51],"for":[52,92,154,176,193],"degradation":[54,101,145,201],"by":[58],"ALP":[59,144,165,173],"with":[60],"crosstalk":[62],"element":[63],"mTOR.":[65],"Using":[66],"codimension-1":[67,104],"bifurcation":[68,106],"analysis,":[69],"tri-stability":[71],"surveyed":[76],"under":[77,113],"three":[78],"different":[79],"stress":[80,156],"signals":[81],"and,":[82],"addition,":[84],"consideration":[85],"given":[87],"to":[88,138,159,163],"regulatory":[90],"mechanisms":[91],"Beclin1-":[94],"mTOR-dependent":[96],"rates":[97],"on":[98],"using":[102],"and\u22122":[105],"diagrams.":[107],"It":[108,168],"was":[109,166,169],"found":[110],"that,":[111],"especially":[112],"internal":[114],"external":[116],"oxidative":[117],"stresses":[118],"(":[119],"S":[120,157],"1":[121,158],"),":[122],"bistable":[124],"switch":[125],"aggregation":[128],"can":[132],"be":[133],"transformed":[134],"from":[135],"an":[136],"irreversible":[137],"reversible":[140],"condition":[141],"through":[142],"pathways.":[146],"Furthermore,":[147],"robustness":[149],"tri-stable":[152,184],"state":[153],"parameters":[161],"related":[162],"mTOR-mediated":[164,172],"probed.":[167],"confirmed":[170],"important":[175],"maintaining":[177],"essential":[179],"dynamic":[180,204],"features":[181],"state.":[185],"This":[186],"study":[187],"may":[188],"provide":[189],"promising":[191],"avenue":[192],"conducting":[194],"further":[195],"experiments":[196],"simulations":[198],"mechanism":[202],"modeling":[205],"PD.":[207]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2}],"updated_date":"2026-06-06T09:05:17.133730","created_date":"2025-10-10T00:00:00"}
