{"id":"https://openalex.org/W4392236107","doi":"https://doi.org/10.3389/fdgth.2024.1282043","title":"Word sense disambiguation of acronyms in clinical narratives","display_name":"Word sense disambiguation of acronyms in clinical narratives","publication_year":2024,"publication_date":"2024-02-28","ids":{"openalex":"https://openalex.org/W4392236107","doi":"https://doi.org/10.3389/fdgth.2024.1282043","pmid":"https://pubmed.ncbi.nlm.nih.gov/38482049"},"language":"en","primary_location":{"id":"doi:10.3389/fdgth.2024.1282043","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fdgth.2024.1282043","pdf_url":"https://www.frontiersin.org/journals/digital-health/articles/10.3389/fdgth.2024.1282043/pdf","source":{"id":"https://openalex.org/S4210170686","display_name":"Frontiers in Digital Health","issn_l":"2673-253X","issn":["2673-253X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Digital Health","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.frontiersin.org/journals/digital-health/articles/10.3389/fdgth.2024.1282043/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021195814","display_name":"Daphn\u00e9 Chopard","orcid":"https://orcid.org/0000-0002-7964-1681"},"institutions":[{"id":"https://openalex.org/I79510175","display_name":"Cardiff University","ror":"https://ror.org/03kk7td41","country_code":"GB","type":"education","lineage":["https://openalex.org/I79510175"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Daphn\u00e9 Chopard","raw_affiliation_strings":["School of Computer Science and Informatics, Cardiff University, Cardiff, United Kingdom"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Informatics, Cardiff University, Cardiff, United Kingdom","institution_ids":["https://openalex.org/I79510175"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028979534","display_name":"Padraig Corcoran","orcid":"https://orcid.org/0000-0001-9731-3385"},"institutions":[{"id":"https://openalex.org/I79510175","display_name":"Cardiff University","ror":"https://ror.org/03kk7td41","country_code":"GB","type":"education","lineage":["https://openalex.org/I79510175"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Padraig Corcoran","raw_affiliation_strings":["School of Computer Science and Informatics, Cardiff University, Cardiff, United Kingdom"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Informatics, Cardiff University, Cardiff, United Kingdom","institution_ids":["https://openalex.org/I79510175"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016345745","display_name":"\u202aIrena Spasi\u0107","orcid":"https://orcid.org/0000-0002-8132-3885"},"institutions":[{"id":"https://openalex.org/I79510175","display_name":"Cardiff University","ror":"https://ror.org/03kk7td41","country_code":"GB","type":"education","lineage":["https://openalex.org/I79510175"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Irena Spasi\u0107","raw_affiliation_strings":["School of Computer Science and Informatics, Cardiff University, Cardiff, United Kingdom"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Informatics, Cardiff University, Cardiff, United Kingdom","institution_ids":["https://openalex.org/I79510175"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5021195814"],"corresponding_institution_ids":["https://openalex.org/I79510175"],"apc_list":{"value":1900,"currency":"USD","value_usd":1900},"apc_paid":{"value":1900,"currency":"USD","value_usd":1900},"fwci":0.9446,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.72675742,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":96},"biblio":{"volume":"6","issue":null,"first_page":"1282043","last_page":"1282043"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12881","display_name":"linguistics and terminology studies","score":0.9467999935150146,"subfield":{"id":"https://openalex.org/subfields/1203","display_name":"Language and Linguistics"},"field":{"id":"https://openalex.org/fields/12","display_name":"Arts and Humanities"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T14134","display_name":"Medical and Biological Sciences","score":0.9456999897956848,"subfield":{"id":"https://openalex.org/subfields/2702","display_name":"Anatomy"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/acronym","display_name":"Acronym","score":0.8984121680259705},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7760928869247437},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.6406198143959045},{"id":"https://openalex.org/keywords/narrative","display_name":"Narrative","score":0.6135685443878174},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5198333859443665},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.488784521818161},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.482211709022522},{"id":"https://openalex.org/keywords/word","display_name":"Word (group theory)","score":0.4717089831829071},{"id":"https://openalex.org/keywords/f1-score","display_name":"F1 score","score":0.42122697830200195},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.32574883103370667},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.20559823513031006}],"concepts":[{"id":"https://openalex.org/C482391","wikidata":"https://www.wikidata.org/wiki/Q101244","display_name":"Acronym","level":2,"score":0.8984121680259705},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7760928869247437},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.6406198143959045},{"id":"https://openalex.org/C199033989","wikidata":"https://www.wikidata.org/wiki/Q1318295","display_name":"Narrative","level":2,"score":0.6135685443878174},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5198333859443665},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.488784521818161},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.482211709022522},{"id":"https://openalex.org/C90805587","wikidata":"https://www.wikidata.org/wiki/Q10944557","display_name":"Word (group theory)","level":2,"score":0.4717089831829071},{"id":"https://openalex.org/C148524875","wikidata":"https://www.wikidata.org/wiki/Q6975395","display_name":"F1 score","level":2,"score":0.42122697830200195},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.32574883103370667},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.20559823513031006},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.3389/fdgth.2024.1282043","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fdgth.2024.1282043","pdf_url":"https://www.frontiersin.org/journals/digital-health/articles/10.3389/fdgth.2024.1282043/pdf","source":{"id":"https://openalex.org/S4210170686","display_name":"Frontiers in Digital Health","issn_l":"2673-253X","issn":["2673-253X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Digital Health","raw_type":"journal-article"},{"id":"pmid:38482049","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38482049","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in digital health","raw_type":null},{"id":"pmh:oai:https://orca.cardiff.ac.uk:166338","is_oa":true,"landing_page_url":null,"pdf_url":"https://orca.cardiff.ac.uk/id/eprint/166338/8/fdgth-06-1282043.pdf","source":{"id":"https://openalex.org/S4306401195","display_name":"ORCA Online Research @Cardiff (Cardiff University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79510175","host_organization_name":"Cardiff University","host_organization_lineage":["https://openalex.org/I79510175"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:10932973","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10932973","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10932973/pdf/fdgth-06-1282043.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Front Digit Health","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:0631eecbf4cb44608b4b52920bd2108c","is_oa":true,"landing_page_url":"https://doaj.org/article/0631eecbf4cb44608b4b52920bd2108c","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Digital Health, Vol 6 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3389/fdgth.2024.1282043","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fdgth.2024.1282043","pdf_url":"https://www.frontiersin.org/journals/digital-health/articles/10.3389/fdgth.2024.1282043/pdf","source":{"id":"https://openalex.org/S4210170686","display_name":"Frontiers in Digital Health","issn_l":"2673-253X","issn":["2673-253X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Digital Health","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4392236107.pdf"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W22182018","https://openalex.org/W1986535287","https://openalex.org/W1991154713","https://openalex.org/W2032898843","https://openalex.org/W2038721957","https://openalex.org/W2061130538","https://openalex.org/W2061167720","https://openalex.org/W2091963680","https://openalex.org/W2095588973","https://openalex.org/W2114420708","https://openalex.org/W2119207919","https://openalex.org/W2131598923","https://openalex.org/W2159583324","https://openalex.org/W2159882563","https://openalex.org/W2162800060","https://openalex.org/W2463981085","https://openalex.org/W2466768907","https://openalex.org/W2794395722","https://openalex.org/W2900049381","https://openalex.org/W2966522979","https://openalex.org/W2970773744","https://openalex.org/W2979284462","https://openalex.org/W3005576497","https://openalex.org/W3013605954","https://openalex.org/W3030772833","https://openalex.org/W3130901903","https://openalex.org/W3134741912","https://openalex.org/W3141935250","https://openalex.org/W3145907134","https://openalex.org/W3148619136","https://openalex.org/W3165195746","https://openalex.org/W3216233619","https://openalex.org/W4200157741","https://openalex.org/W4225090988","https://openalex.org/W4250877149","https://openalex.org/W4384154800","https://openalex.org/W6683162694","https://openalex.org/W6766808121","https://openalex.org/W6778688570","https://openalex.org/W6790078516","https://openalex.org/W6791205073","https://openalex.org/W6792139847","https://openalex.org/W6792786672","https://openalex.org/W6794048768"],"related_works":["https://openalex.org/W4224143833","https://openalex.org/W2768246685","https://openalex.org/W2599055196","https://openalex.org/W4317856743","https://openalex.org/W4319323735","https://openalex.org/W2925962066","https://openalex.org/W2779863472","https://openalex.org/W2516698565","https://openalex.org/W4311710969","https://openalex.org/W4220763086"],"abstract_inverted_index":{"Clinical":[0],"narratives":[1,125],"commonly":[2],"use":[3],"acronyms":[4,21,119],"without":[5],"explicitly":[6],"defining":[7],"their":[8,18,31],"long":[9],"forms.":[10],"This":[11,105],"makes":[12],"it":[13],"difficult":[14],"to":[15,23,30,68,113,152],"automatically":[16,76],"interpret":[17],"sense":[19,116,130],"as":[20],"tend":[22],"be":[24,66,150],"highly":[25],"ambiguous.":[26],"Supervised":[27],"learning":[28],"approaches":[29],"disambiguation":[32,98],"in":[33,102],"the":[34,50,93,127,133,146],"clinical":[35,124,144],"domain":[36],"are":[37],"hindered":[38],"by":[39,72],"issues":[40,71],"associated":[41],"with":[42,109],"patient":[43],"privacy":[44],"and":[45,52],"manual":[46],"annotation,":[47],"which":[48],"limit":[49],"size":[51],"diversity":[53],"of":[54,79,95,99,118,123,135,140,155],"training":[55],"data.":[56],"In":[57,143],"this":[58],"study,":[59],"we":[60],"demonstrate":[61],"how":[62],"scientific":[63,103],"abstracts":[64],"can":[65,149],"utilised":[67],"overcome":[69],"these":[70],"creating":[73],"a":[74,90,115,121,138],"large":[75],"annotated":[77],"dataset":[78,91],"artificially":[80],"simulated":[81],"global":[82],"acronyms.":[83],"A":[84],"neural":[85],"network":[86,106],"trained":[87],"on":[88,97,126,137],"such":[89],"achieved":[92,132],"F1-score":[94,134],"95%":[96],"acronym":[100],"mentions":[101],"abstracts.":[104],"was":[107],"integrated":[108],"multi-word":[110],"term":[111],"recognition":[112],"extract":[114],"inventory":[117],"from":[120],"corpus":[122,139],"fly.":[128],"Acronym":[129],"extraction":[131],"74%":[136],"radiology":[141],"reports.":[142],"practice,":[145],"suggested":[147],"approach":[148],"used":[151],"facilitate":[153],"development":[154],"institution-specific":[156],"inventories.":[157]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2}],"updated_date":"2026-03-25T14:56:36.534964","created_date":"2025-10-10T00:00:00"}
