{"id":"https://openalex.org/W4308336523","doi":"https://doi.org/10.3389/fdata.2022.1016606","title":"WINNER: A network biology tool for biomolecular characterization and prioritization","display_name":"WINNER: A network biology tool for biomolecular characterization and prioritization","publication_year":2022,"publication_date":"2022-11-04","ids":{"openalex":"https://openalex.org/W4308336523","doi":"https://doi.org/10.3389/fdata.2022.1016606","pmid":"https://pubmed.ncbi.nlm.nih.gov/36407327"},"language":"en","primary_location":{"id":"doi:10.3389/fdata.2022.1016606","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fdata.2022.1016606","pdf_url":null,"source":{"id":"https://openalex.org/S4210201220","display_name":"Frontiers in Big Data","issn_l":"2624-909X","issn":["2624-909X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Big Data","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.3389/fdata.2022.1016606","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100674027","display_name":"Thanh Nguyen","orcid":"https://orcid.org/0000-0003-1687-2359"},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Thanh Nguyen","raw_affiliation_strings":["Department of Biomedical Engineering, The University of Alabama at Birmingham, Birmingham, AL, United States","Informatics Institute in School of Medicine, The University of Alabama at Birmingham, Birmingham, AL, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, The University of Alabama at Birmingham, Birmingham, AL, United States","institution_ids":["https://openalex.org/I32389192"]},{"raw_affiliation_string":"Informatics Institute in School of Medicine, The University of Alabama at Birmingham, Birmingham, AL, United States","institution_ids":["https://openalex.org/I32389192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041167576","display_name":"Zongliang Yue","orcid":"https://orcid.org/0000-0001-8290-123X"},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zongliang Yue","raw_affiliation_strings":["Informatics Institute in School of Medicine, The University of Alabama at Birmingham, Birmingham, AL, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Informatics Institute in School of Medicine, The University of Alabama at Birmingham, Birmingham, AL, United States","institution_ids":["https://openalex.org/I32389192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075464588","display_name":"Radomir M. Slominski","orcid":"https://orcid.org/0000-0002-2929-1118"},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Radomir Slominski","raw_affiliation_strings":["Informatics Institute in School of Medicine, The University of Alabama at Birmingham, Birmingham, AL, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Informatics Institute in School of Medicine, The University of Alabama at Birmingham, Birmingham, AL, United States","institution_ids":["https://openalex.org/I32389192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024947185","display_name":"Robert S. Welner","orcid":"https://orcid.org/0000-0003-2498-9469"},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robert Welner","raw_affiliation_strings":["Comprehensive Arthritis, Musculoskeletal, Bone and Autoimmunity Center (CAMBAC), School of Medicine, The University of Alabama at Birmingham, Birmingham, AL, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Comprehensive Arthritis, Musculoskeletal, Bone and Autoimmunity Center (CAMBAC), School of Medicine, The University of Alabama at Birmingham, Birmingham, AL, United States","institution_ids":["https://openalex.org/I32389192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030985040","display_name":"Jianyi Zhang","orcid":"https://orcid.org/0000-0002-3955-6554"},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jianyi Zhang","raw_affiliation_strings":["Department of Biomedical Engineering, The University of Alabama at Birmingham, Birmingham, AL, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, The University of Alabama at Birmingham, Birmingham, AL, United States","institution_ids":["https://openalex.org/I32389192"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058469124","display_name":"Jake Y. Chen","orcid":"https://orcid.org/0000-0001-8829-7504"},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jake Y. Chen","raw_affiliation_strings":["Informatics Institute in School of Medicine, The University of Alabama at Birmingham, Birmingham, AL, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Informatics Institute in School of Medicine, The University of Alabama at Birmingham, Birmingham, AL, United States","institution_ids":["https://openalex.org/I32389192"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5058469124"],"corresponding_institution_ids":["https://openalex.org/I32389192"],"apc_list":{"value":1150,"currency":"USD","value_usd":1150},"apc_paid":{"value":1150,"currency":"USD","value_usd":1150},"fwci":0.5197,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.62321793,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":97},"biblio":{"volume":"5","issue":null,"first_page":"1016606","last_page":"1016606"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9746000170707703,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9746000170707703,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10064","display_name":"Complex Network Analysis Techniques","score":0.005799999926239252,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13283","display_name":"Mental Health Research Topics","score":0.00570000009611249,"subfield":{"id":"https://openalex.org/subfields/3205","display_name":"Experimental and Cognitive Psychology"},"field":{"id":"https://openalex.org/fields/32","display_name":"Psychology"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/prioritization","display_name":"Prioritization","score":0.7525185346603394},{"id":"https://openalex.org/keywords/characterization","display_name":"Characterization (materials science)","score":0.5341595411300659},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.531938374042511},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4669089913368225},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.45891958475112915},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.40553587675094604},{"id":"https://openalex.org/keywords/nanotechnology","display_name":"Nanotechnology","score":0.2995164096355438},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.22224336862564087},{"id":"https://openalex.org/keywords/management-science","display_name":"Management science","score":0.1452886462211609},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.09098580479621887}],"concepts":[{"id":"https://openalex.org/C2777615720","wikidata":"https://www.wikidata.org/wiki/Q11888847","display_name":"Prioritization","level":2,"score":0.7525185346603394},{"id":"https://openalex.org/C2780841128","wikidata":"https://www.wikidata.org/wiki/Q5073781","display_name":"Characterization (materials science)","level":2,"score":0.5341595411300659},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.531938374042511},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4669089913368225},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.45891958475112915},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.40553587675094604},{"id":"https://openalex.org/C171250308","wikidata":"https://www.wikidata.org/wiki/Q11468","display_name":"Nanotechnology","level":1,"score":0.2995164096355438},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.22224336862564087},{"id":"https://openalex.org/C539667460","wikidata":"https://www.wikidata.org/wiki/Q2414942","display_name":"Management science","level":1,"score":0.1452886462211609},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.09098580479621887}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3389/fdata.2022.1016606","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fdata.2022.1016606","pdf_url":null,"source":{"id":"https://openalex.org/S4210201220","display_name":"Frontiers in Big Data","issn_l":"2624-909X","issn":["2624-909X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Big Data","raw_type":"journal-article"},{"id":"pmid:36407327","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36407327","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in big data","raw_type":null},{"id":"pmh:oai:doaj.org/article:afe593dc8c904998b61703c6ba34812d","is_oa":true,"landing_page_url":"https://doaj.org/article/afe593dc8c904998b61703c6ba34812d","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Big Data, Vol 5 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9672476","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9672476","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Front Big Data","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3389/fdata.2022.1016606","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fdata.2022.1016606","pdf_url":null,"source":{"id":"https://openalex.org/S4210201220","display_name":"Frontiers in Big Data","issn_l":"2624-909X","issn":["2624-909X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Big Data","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.44999998807907104,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G300335665","display_name":null,"funder_award_id":"U54TR001005","funder_id":"https://openalex.org/F4320306080","funder_display_name":"Foundation for the National Institutes of Health"},{"id":"https://openalex.org/G3218837259","display_name":null,"funder_award_id":"U54TR001005","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5340532724","display_name":null,"funder_award_id":"R01HL150078","funder_id":"https://openalex.org/F4320306080","funder_display_name":"Foundation for the National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306080","display_name":"Foundation for the National Institutes of Health","ror":"https://ror.org/00k86s890"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":154,"referenced_works":["https://openalex.org/W156645367","https://openalex.org/W1503899947","https://openalex.org/W1565180787","https://openalex.org/W1566952502","https://openalex.org/W1592868488","https://openalex.org/W1647856483","https://openalex.org/W1854214752","https://openalex.org/W1923336327","https://openalex.org/W1964698839","https://openalex.org/W1965302838","https://openalex.org/W1966519033","https://openalex.org/W1969038150","https://openalex.org/W1972233468","https://openalex.org/W1973144539","https://openalex.org/W1975685675","https://openalex.org/W1976569548","https://openalex.org/W1979958627","https://openalex.org/W1983007670","https://openalex.org/W1984581368","https://openalex.org/W1984828417","https://openalex.org/W1985531339","https://openalex.org/W1986657538","https://openalex.org/W1989172386","https://openalex.org/W2003516452","https://openalex.org/W2005431883","https://openalex.org/W2007339547","https://openalex.org/W2011041903","https://openalex.org/W2011849452","https://openalex.org/W2017274683","https://openalex.org/W2018276789","https://openalex.org/W2020755434","https://openalex.org/W2032143276","https://openalex.org/W2034368202","https://openalex.org/W2035005072","https://openalex.org/W2035847235","https://openalex.org/W2036565476","https://openalex.org/W2037250671","https://openalex.org/W2039402692","https://openalex.org/W2051616601","https://openalex.org/W2064492246","https://openalex.org/W2064790088","https://openalex.org/W2066325577","https://openalex.org/W2068537457","https://openalex.org/W2070448217","https://openalex.org/W2070734183","https://openalex.org/W2073654379","https://openalex.org/W2073944569","https://openalex.org/W2075897300","https://openalex.org/W2080240378","https://openalex.org/W2081375228","https://openalex.org/W2085934079","https://openalex.org/W2090247362","https://openalex.org/W2092247630","https://openalex.org/W2094155177","https://openalex.org/W2096173332","https://openalex.org/W2097789418","https://openalex.org/W2098898117","https://openalex.org/W2102992354","https://openalex.org/W2103478816","https://openalex.org/W2104406447","https://openalex.org/W2104622981","https://openalex.org/W2105984192","https://openalex.org/W2107427447","https://openalex.org/W2109506073","https://openalex.org/W2109555487","https://openalex.org/W2110553827","https://openalex.org/W2111030344","https://openalex.org/W2112099582","https://openalex.org/W2117179247","https://openalex.org/W2118607021","https://openalex.org/W2124649657","https://openalex.org/W2126282366","https://openalex.org/W2126536892","https://openalex.org/W2127603354","https://openalex.org/W2130410032","https://openalex.org/W2130473558","https://openalex.org/W2133465414","https://openalex.org/W2134526812","https://openalex.org/W2138906045","https://openalex.org/W2146925231","https://openalex.org/W2149492645","https://openalex.org/W2150729174","https://openalex.org/W2151936673","https://openalex.org/W2152602212","https://openalex.org/W2154755614","https://openalex.org/W2154897810","https://openalex.org/W2159482845","https://openalex.org/W2159675211","https://openalex.org/W2160198684","https://openalex.org/W2162067157","https://openalex.org/W2162143298","https://openalex.org/W2166267715","https://openalex.org/W2169456326","https://openalex.org/W2171437346","https://openalex.org/W2176829802","https://openalex.org/W2179438025","https://openalex.org/W2182678905","https://openalex.org/W2214074259","https://openalex.org/W2394951375","https://openalex.org/W2503772393","https://openalex.org/W2521110250","https://openalex.org/W2531294657","https://openalex.org/W2537623931","https://openalex.org/W2558411436","https://openalex.org/W2559588208","https://openalex.org/W2580398445","https://openalex.org/W2581573542","https://openalex.org/W2588469192","https://openalex.org/W2592729027","https://openalex.org/W2607153830","https://openalex.org/W2610537770","https://openalex.org/W2624021832","https://openalex.org/W2726239078","https://openalex.org/W2752299790","https://openalex.org/W2767701190","https://openalex.org/W2768074158","https://openalex.org/W2777149863","https://openalex.org/W2789374663","https://openalex.org/W2794305175","https://openalex.org/W2883350147","https://openalex.org/W2884217607","https://openalex.org/W2889924971","https://openalex.org/W2898788303","https://openalex.org/W2899478022","https://openalex.org/W2901212686","https://openalex.org/W2930902918","https://openalex.org/W2933399873","https://openalex.org/W2939514640","https://openalex.org/W2952128040","https://openalex.org/W2952700880","https://openalex.org/W2962756421","https://openalex.org/W2969263349","https://openalex.org/W2996448448","https://openalex.org/W3002587352","https://openalex.org/W3019964615","https://openalex.org/W3044467369","https://openalex.org/W3046889901","https://openalex.org/W3082522803","https://openalex.org/W3116876779","https://openalex.org/W3118594101","https://openalex.org/W3168198375","https://openalex.org/W3169730782","https://openalex.org/W4206965224","https://openalex.org/W4210428283","https://openalex.org/W4221031812","https://openalex.org/W4233120011","https://openalex.org/W4254466172","https://openalex.org/W4255324924","https://openalex.org/W4281642555","https://openalex.org/W4283796144","https://openalex.org/W4289253660","https://openalex.org/W4388290870","https://openalex.org/W6678905480","https://openalex.org/W6796005052"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W1971568933"],"abstract_inverted_index":{"Background":[0],"and":[1,68,89,103,117,181,295,308,333,350],"contribution":[2,201],"In":[3,301],"network":[4,115,122,176,208,225,238,251,346,356,388],"biology,":[5],"molecular":[6,70,113,182],"functions":[7],"can":[8,360],"be":[9],"characterized":[10],"by":[11,220,312,322],"network-based":[12],"inference,":[13],"or":[14,57,374],"\u201cguilt-by-associations.\u201d":[15],"PageRank-like":[16],"tools":[17],"have":[18,229],"been":[19],"applied":[20],"in":[21,37,49,72,135,216,223],"the":[22,31,38,109,125,136,142,164,172,195,200,206,212,236,263,279,306,345],"study":[23],"of":[24,34,46,111,144,151,167,178,199,202,214,235,262,281,370],"biomolecular":[25,87,174],"interaction":[26,114,175],"networks":[27,74],"to":[28,61,65,129,132,171,205,340,365],"obtain":[29],"further":[30],"relative":[32,196],"significance":[33,166,198],"all":[35,124,302],"molecules":[36,170,180,219],"network.":[39,137],"However,":[40],"there":[41,384],"is":[42,156,187,385],"a":[43,85,157,188,258,284,354,368],"great":[44],"deal":[45],"inherent":[47],"noise":[48],"widely":[50],"accessible":[51],"data":[52,79,116],"sets":[53],"for":[54],"gene-to-gene":[55],"associations":[56],"protein-protein":[58],"interactions.":[59,183],"How":[60],"develop":[62],"robust":[63],"tests":[64],"expand,":[66],"filter,":[67],"rank":[69],"entities":[71],"disease-specific":[73],"remains":[75],"an":[76,119],"ad":[77],"hoc":[78],"analysis":[80],"process.":[81],"Results":[82],"We":[83,210,228,277],"describe":[84],"new":[86,363],"characterization":[88],"prioritization":[90],"tool":[91,364],"called":[92],"W":[93],"eighted":[94],"I":[95],"n-":[96],"N":[97,99],"etwork":[98],"ode":[100],"E":[101],"xpansion":[102],"R":[104],"anking":[105],"(WINNER).":[106],"It":[107],"takes":[108],"input":[110],"any":[112],"generates":[118],"optionally":[120],"expanded":[121,307],"with":[123,248,268,283],"nodes":[126],"ranked":[127],"according":[128],"their":[130],"relevance":[131],"one":[133],"another":[134],"To":[138],"help":[139],"users":[140,359],"assess":[141],"robustness":[143,213],"results,":[145],"WINNER":[146,215,282,313,336,358],"provides":[147],"two":[148],"different":[149],"types":[150],"statistics.":[152],"The":[153,184],"first":[154],"type":[155,186],"node-expansion":[158],"p":[159,190],"-value,":[160,191],"which":[161,192,244],"helps":[162,193],"evaluate":[163,194,367],"statistical":[165,197],"adding":[168],"\u201cnon-seed\u201d":[169],"original":[173],"consisting":[177],"\u201cseed\u201d":[179],"second":[185],"node-ranking":[189],"each":[203],"node":[204,232,349],"overall":[207],"architecture.":[209],"validated":[211,256],"ranking":[217,242,337,342],"top":[218],"spiking":[221],"noises":[222],"several":[224],"permutation":[226],"experiments.":[227],"found":[230],"that":[231,257],"degree\u2013preservation":[233],"randomization":[234,252],"gene":[237,250,324],"produced":[239,376],"normally":[240],"distributed":[241],"scores,":[243],"outperform":[245],"those":[246,320],"made":[247],"other":[249,323,341],"techniques.":[253],"Furthermore,":[254],"we":[255],"more":[259,317],"significant":[260],"proportion":[261],"WINNER-ranked":[264],"genes":[265,310],"was":[266],"associated":[267],"disease":[269,315],"biology":[270,316,379],"than":[271,319],"existing":[272],"methods":[273,343],"such":[274],"as":[275,381,383],"PageRank.":[276],"demonstrated":[278],"performance":[280],"few":[285],"case":[286,304],"studies,":[287,305],"including":[288,328],"Alzheimer's":[289],"disease,":[290],"breast":[291,298],"cancer,":[292],"myocardial":[293],"infarctions,":[294],"Triple":[296],"negative":[297],"cancer":[299],"(TNBC).":[300],"these":[303],"top-ranked":[309],"identified":[311,321],"reveal":[314],"significantly":[318],"prioritizing":[325],"software":[326],"tools,":[327],"Ingenuity":[329],"Pathway":[330],"Analysis":[331],"(IPA)":[332],"DiAMOND.":[334],"Conclusion":[335],"strongly":[338],"correlates":[339],"when":[344],"covers":[347],"sufficient":[348],"edge":[351],"information,":[352],"indicating":[353],"high":[355],"quality.":[357],"use":[361],"this":[362],"robustly":[366],"list":[369],"candidate":[371],"genes,":[372],"proteins,":[373],"metabolites":[375],"from":[377],"high-throughput":[378],"experiments,":[380],"long":[382],"available":[386],"gene/protein/metabolic":[387],"information.":[389]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
