{"id":"https://openalex.org/W7136175203","doi":"https://doi.org/10.3389/fbinf.2026.1764743","title":"An integrated automated deep learning framework for annotating tumor-infiltrating lymphocytes in lung adenocarcinoma pathology","display_name":"An integrated automated deep learning framework for annotating tumor-infiltrating lymphocytes in lung adenocarcinoma pathology","publication_year":2026,"publication_date":"2026-03-16","ids":{"openalex":"https://openalex.org/W7136175203","doi":"https://doi.org/10.3389/fbinf.2026.1764743","pmid":"https://pubmed.ncbi.nlm.nih.gov/41918941"},"language":"en","primary_location":{"id":"doi:10.3389/fbinf.2026.1764743","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2026.1764743","pdf_url":"https://public-pages-files-2025.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2026.1764743/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://public-pages-files-2025.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2026.1764743/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5129409002","display_name":"Xia Li","orcid":null},"institutions":[{"id":"https://openalex.org/I4210126060","display_name":"First Affiliated Hospital of GuangXi Medical University","ror":"https://ror.org/030sc3x20","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210126060"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xia Li","raw_affiliation_strings":["Department of Pathology, the First Affiliated Hospital of Guangxi Medical University"],"affiliations":[{"raw_affiliation_string":"Department of Pathology, the First Affiliated Hospital of Guangxi Medical University","institution_ids":["https://openalex.org/I4210126060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5129559752","display_name":"Kang-Lai Wei","orcid":null},"institutions":[{"id":"https://openalex.org/I160354086","display_name":"Guangxi Medical University","ror":"https://ror.org/03dveyr97","country_code":"CN","type":"education","lineage":["https://openalex.org/I160354086"]},{"id":"https://openalex.org/I4210134448","display_name":"Fourth Affiliated Hospital of Guangxi Medical University","ror":"https://ror.org/0335pr187","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210134448"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kang-Lai Wei","raw_affiliation_strings":["Department of Pathology, the Second Affiliated Hospital of Guangxi Medical University"],"affiliations":[{"raw_affiliation_string":"Department of Pathology, the Second Affiliated Hospital of Guangxi Medical University","institution_ids":["https://openalex.org/I160354086","https://openalex.org/I4210134448"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100832815","display_name":"Zhaoquan Huang","orcid":"https://orcid.org/0009-0008-2404-5947"},"institutions":[{"id":"https://openalex.org/I4210126060","display_name":"First Affiliated Hospital of GuangXi Medical University","ror":"https://ror.org/030sc3x20","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210126060"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhao-Quan Huang","raw_affiliation_strings":["Department of Pathology, the First Affiliated Hospital of Guangxi Medical University","Health Management Department, the First Affiliated Hospital of Guangxi Medical University"],"affiliations":[{"raw_affiliation_string":"Department of Pathology, the First Affiliated Hospital of Guangxi Medical University","institution_ids":["https://openalex.org/I4210126060"]},{"raw_affiliation_string":"Health Management Department, the First Affiliated Hospital of Guangxi Medical University","institution_ids":["https://openalex.org/I4210126060"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101785277","display_name":"Ziyan Huang","orcid":"https://orcid.org/0000-0003-3872-6993"},"institutions":[{"id":"https://openalex.org/I4210126060","display_name":"First Affiliated Hospital of GuangXi Medical University","ror":"https://ror.org/030sc3x20","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210126060"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zi-Yan Huang","raw_affiliation_strings":["Department of Pathology, the First Affiliated Hospital of Guangxi Medical University","Health Management Department, the First Affiliated Hospital of Guangxi Medical University"],"affiliations":[{"raw_affiliation_string":"Department of Pathology, the First Affiliated Hospital of Guangxi Medical University","institution_ids":["https://openalex.org/I4210126060"]},{"raw_affiliation_string":"Health Management Department, the First Affiliated Hospital of Guangxi Medical University","institution_ids":["https://openalex.org/I4210126060"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5129409002"],"corresponding_institution_ids":["https://openalex.org/I4210126060"],"apc_list":{"value":1900,"currency":"USD","value_usd":1900},"apc_paid":{"value":1900,"currency":"USD","value_usd":1900},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.58179392,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"6","issue":null,"first_page":"1764743","last_page":"1764743"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.6600000262260437,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.6600000262260437,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10202","display_name":"Lung Cancer Diagnosis and Treatment","score":0.08860000222921371,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10158","display_name":"Cancer Immunotherapy and Biomarkers","score":0.06780000030994415,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/s\u00f8rensen\u2013dice-coefficient","display_name":"S\u00f8rensen\u2013Dice coefficient","score":0.7411999702453613},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.7278000116348267},{"id":"https://openalex.org/keywords/dice","display_name":"Dice","score":0.661899983882904},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.5081999897956848},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.4253000020980835},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3991999924182892},{"id":"https://openalex.org/keywords/test-set","display_name":"Test set","score":0.3950999975204468},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.3817000091075897},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.3328000009059906}],"concepts":[{"id":"https://openalex.org/C163892561","wikidata":"https://www.wikidata.org/wiki/Q2613728","display_name":"S\u00f8rensen\u2013Dice coefficient","level":4,"score":0.7411999702453613},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.7278000116348267},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7121999859809875},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6793000102043152},{"id":"https://openalex.org/C22029948","wikidata":"https://www.wikidata.org/wiki/Q45089","display_name":"Dice","level":2,"score":0.661899983882904},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.5081999897956848},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.4253000020980835},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3991999924182892},{"id":"https://openalex.org/C169903167","wikidata":"https://www.wikidata.org/wiki/Q3985153","display_name":"Test set","level":2,"score":0.3950999975204468},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.3817000091075897},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.3328000009059906},{"id":"https://openalex.org/C136389625","wikidata":"https://www.wikidata.org/wiki/Q334384","display_name":"Supervised learning","level":3,"score":0.31839999556541443},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.31130000948905945},{"id":"https://openalex.org/C196822366","wikidata":"https://www.wikidata.org/wiki/Q270524","display_name":"Parenchyma","level":2,"score":0.296999990940094},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.290800005197525},{"id":"https://openalex.org/C58489278","wikidata":"https://www.wikidata.org/wiki/Q1172284","display_name":"Data set","level":2,"score":0.29010000824928284},{"id":"https://openalex.org/C16910744","wikidata":"https://www.wikidata.org/wiki/Q7705759","display_name":"Test data","level":2,"score":0.2892000079154968},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.2888999879360199},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.2842999994754791},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.2825999855995178},{"id":"https://openalex.org/C2776151529","wikidata":"https://www.wikidata.org/wiki/Q3045304","display_name":"Object detection","level":3,"score":0.28130000829696655},{"id":"https://openalex.org/C2781182431","wikidata":"https://www.wikidata.org/wiki/Q356033","display_name":"Adenocarcinoma","level":3,"score":0.27720001339912415},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.2718000113964081},{"id":"https://openalex.org/C9417928","wikidata":"https://www.wikidata.org/wiki/Q1070689","display_name":"Image processing","level":3,"score":0.2702000141143799},{"id":"https://openalex.org/C51632099","wikidata":"https://www.wikidata.org/wiki/Q3985153","display_name":"Training set","level":2,"score":0.2687999904155731},{"id":"https://openalex.org/C2776256026","wikidata":"https://www.wikidata.org/wiki/Q47912","display_name":"Lung cancer","level":2,"score":0.2676999866962433},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.26330000162124634},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.25999999046325684},{"id":"https://openalex.org/C2777522853","wikidata":"https://www.wikidata.org/wiki/Q5276128","display_name":"Digital pathology","level":2,"score":0.25619998574256897}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3389/fbinf.2026.1764743","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2026.1764743","pdf_url":"https://public-pages-files-2025.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2026.1764743/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:41918941","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41918941","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:a2d2314815734042b39ab80655f4d2ca","is_oa":true,"landing_page_url":"https://doaj.org/article/a2d2314815734042b39ab80655f4d2ca","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Bioinformatics, Vol 6 (2026)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:13033600","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13033600/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Front Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3389/fbinf.2026.1764743","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2026.1764743","pdf_url":"https://public-pages-files-2025.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2026.1764743/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W7136175203.pdf","grobid_xml":"https://content.openalex.org/works/W7136175203.grobid-xml"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W2049674541","https://openalex.org/W2470965540","https://openalex.org/W2565639579","https://openalex.org/W3025800305","https://openalex.org/W3113757710","https://openalex.org/W3164970261","https://openalex.org/W3183334770","https://openalex.org/W3187589338","https://openalex.org/W3204013916","https://openalex.org/W3208871062","https://openalex.org/W4205115378","https://openalex.org/W4281706766","https://openalex.org/W4281878278","https://openalex.org/W4283384191","https://openalex.org/W4286457244","https://openalex.org/W4315629521","https://openalex.org/W4318754332","https://openalex.org/W4364381567","https://openalex.org/W4365143687","https://openalex.org/W4379055589","https://openalex.org/W4385614459","https://openalex.org/W4388413542","https://openalex.org/W4388793540","https://openalex.org/W4396661787","https://openalex.org/W4401725766","https://openalex.org/W4404224063","https://openalex.org/W4404647865","https://openalex.org/W4405090388","https://openalex.org/W4405436456","https://openalex.org/W4407136646","https://openalex.org/W4409723484","https://openalex.org/W4410057706","https://openalex.org/W4410608433","https://openalex.org/W4412070899","https://openalex.org/W4412459896","https://openalex.org/W4414462243","https://openalex.org/W4415354731","https://openalex.org/W4416342523","https://openalex.org/W7116971969"],"related_works":[],"abstract_inverted_index":{"This":[0],"study":[1],"has":[2],"successfully":[3],"developed":[4],"a":[5,24],"fully":[6],"automated":[7],"annotation":[8],"pipeline":[9,22],"for":[10,28],"lung":[11],"adenocarcinoma":[12],"WSIs.":[13],"By":[14],"generating":[15],"high-quality":[16],"annotations":[17],"of":[18,37],"stromal":[19],"TILs,":[20],"this":[21],"establishes":[23],"reliable":[25],"data":[26],"foundation":[27],"subsequent":[29],"computational":[30],"pathology":[31],"research":[32],"and":[33],"facilitates":[34],"the":[35],"advancement":[36],"artificial":[38],"intelligence":[39],"applications":[40],"in":[41],"pathology.":[42]},"counts_by_year":[],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2026-03-17T00:00:00"}
