{"id":"https://openalex.org/W7134842265","doi":"https://doi.org/10.3389/fbinf.2026.1760987","title":"An explainable-AI framework reveals novel lncRNAs specific for breast cancer subtypes","display_name":"An explainable-AI framework reveals novel lncRNAs specific for breast cancer subtypes","publication_year":2026,"publication_date":"2026-03-10","ids":{"openalex":"https://openalex.org/W7134842265","doi":"https://doi.org/10.3389/fbinf.2026.1760987","pmid":"https://pubmed.ncbi.nlm.nih.gov/41884707"},"language":"en","primary_location":{"id":"doi:10.3389/fbinf.2026.1760987","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2026.1760987","pdf_url":"https://public-pages-files-2025.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2026.1760987/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://public-pages-files-2025.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2026.1760987/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000880233","display_name":"Jai Chand Patel","orcid":null},"institutions":[{"id":"https://openalex.org/I59130452","display_name":"University of Nebraska Medical Center","ror":"https://ror.org/00thqtb16","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I59130452"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jai Chand Patel","raw_affiliation_strings":["Department of Genetics, Cell Biology and Anatomy, University of Nebraska Medical Center"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, Cell Biology and Anatomy, University of Nebraska Medical Center","institution_ids":["https://openalex.org/I59130452"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027438092","display_name":"Avinash M. Veerappa","orcid":"https://orcid.org/0000-0002-0204-714X"},"institutions":[{"id":"https://openalex.org/I59130452","display_name":"University of Nebraska Medical Center","ror":"https://ror.org/00thqtb16","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I59130452"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Avinash Veerappa","raw_affiliation_strings":["Department of Genetics, Cell Biology and Anatomy, University of Nebraska Medical Center"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, Cell Biology and Anatomy, University of Nebraska Medical Center","institution_ids":["https://openalex.org/I59130452"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5050528341","display_name":"Chittibabu Guda","orcid":"https://orcid.org/0000-0002-5393-9316"},"institutions":[{"id":"https://openalex.org/I59130452","display_name":"University of Nebraska Medical Center","ror":"https://ror.org/00thqtb16","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I59130452"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chittibabu Guda","raw_affiliation_strings":["Center for Biomedical Informatics, Research and Innovation, University of Nebraska Medical Center","Department of Genetics, Cell Biology and Anatomy, University of Nebraska Medical Center"],"affiliations":[{"raw_affiliation_string":"Center for Biomedical Informatics, Research and Innovation, University of Nebraska Medical Center","institution_ids":["https://openalex.org/I59130452"]},{"raw_affiliation_string":"Department of Genetics, Cell Biology and Anatomy, University of Nebraska Medical Center","institution_ids":["https://openalex.org/I59130452"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5000880233"],"corresponding_institution_ids":["https://openalex.org/I59130452"],"apc_list":{"value":1900,"currency":"USD","value_usd":1900},"apc_paid":{"value":1900,"currency":"USD","value_usd":1900},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.52457169,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"6","issue":null,"first_page":"1760987","last_page":"1760987"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9624999761581421,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9624999761581421,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11297","display_name":"Ferroptosis and cancer prognosis","score":0.00800000037997961,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.0044999998062849045,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/subtyping","display_name":"Subtyping","score":0.9089000225067139},{"id":"https://openalex.org/keywords/breast-cancer","display_name":"Breast cancer","score":0.6000999808311462},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5741999745368958},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4984999895095825},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.421099990606308},{"id":"https://openalex.org/keywords/random-forest","display_name":"Random forest","score":0.41339999437332153},{"id":"https://openalex.org/keywords/biomarker","display_name":"Biomarker","score":0.4081999957561493},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.37119999527931213}],"concepts":[{"id":"https://openalex.org/C83852419","wikidata":"https://www.wikidata.org/wiki/Q2713292","display_name":"Subtyping","level":2,"score":0.9089000225067139},{"id":"https://openalex.org/C530470458","wikidata":"https://www.wikidata.org/wiki/Q128581","display_name":"Breast cancer","level":3,"score":0.6000999808311462},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5741999745368958},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5396000146865845},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5116000175476074},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4984999895095825},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4925000071525574},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.48410001397132874},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.421099990606308},{"id":"https://openalex.org/C169258074","wikidata":"https://www.wikidata.org/wiki/Q245748","display_name":"Random forest","level":2,"score":0.41339999437332153},{"id":"https://openalex.org/C2781197716","wikidata":"https://www.wikidata.org/wiki/Q864574","display_name":"Biomarker","level":2,"score":0.4081999957561493},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.37119999527931213},{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.36320000886917114},{"id":"https://openalex.org/C2780502288","wikidata":"https://www.wikidata.org/wiki/Q28838156","display_name":"Expansive","level":3,"score":0.361299991607666},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.3449000120162964},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.2987000048160553},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.2973000109195709},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.289900004863739},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.2833999991416931},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2808000147342682},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2720000147819519},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.26829999685287476},{"id":"https://openalex.org/C110083411","wikidata":"https://www.wikidata.org/wiki/Q1744628","display_name":"Statistical classification","level":2,"score":0.2630999982357025},{"id":"https://openalex.org/C2777002142","wikidata":"https://www.wikidata.org/wiki/Q5031432","display_name":"Cancer biomarkers","level":3,"score":0.2612999975681305}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3389/fbinf.2026.1760987","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2026.1760987","pdf_url":"https://public-pages-files-2025.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2026.1760987/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:41884707","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41884707","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:e2b194eae29b4058b645e42a9b545df3","is_oa":true,"landing_page_url":"https://doaj.org/article/e2b194eae29b4058b645e42a9b545df3","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Bioinformatics, Vol 6 (2026)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:13008977","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13008977/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Front Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3389/fbinf.2026.1760987","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2026.1760987","pdf_url":"https://public-pages-files-2025.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2026.1760987/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5345320105552673,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G1017548877","display_name":null,"funder_award_id":"P01AG02953","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G1180339281","display_name":null,"funder_award_id":"P30CA036727","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2393445062","display_name":null,"funder_award_id":"P20GM103427","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3180156524","display_name":null,"funder_award_id":"P20GM10342","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G400782526","display_name":null,"funder_award_id":"P01AG029531","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4830224235","display_name":null,"funder_award_id":"5P30CA036727","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5439305446","display_name":null,"funder_award_id":"AG029531","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5576961021","display_name":null,"funder_award_id":"P30CA03672","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6714395206","display_name":null,"funder_award_id":"2P20GM103427","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6969805450","display_name":null,"funder_award_id":"2P01AG029531","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8402232963","display_name":null,"funder_award_id":"CA036727","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8936303055","display_name":null,"funder_award_id":"GM103427","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W7134842265.pdf","grobid_xml":"https://content.openalex.org/works/W7134842265.grobid-xml"},"referenced_works_count":82,"referenced_works":["https://openalex.org/W1519070462","https://openalex.org/W1700449338","https://openalex.org/W1981106603","https://openalex.org/W2002016471","https://openalex.org/W2005203924","https://openalex.org/W2028015021","https://openalex.org/W2048194168","https://openalex.org/W2055043387","https://openalex.org/W2079210988","https://openalex.org/W2096283457","https://openalex.org/W2101234009","https://openalex.org/W2108234281","https://openalex.org/W2110905563","https://openalex.org/W2130242207","https://openalex.org/W2132444060","https://openalex.org/W2141458291","https://openalex.org/W2147996486","https://openalex.org/W2155653793","https://openalex.org/W2169456326","https://openalex.org/W2179438025","https://openalex.org/W2230320310","https://openalex.org/W2272578846","https://openalex.org/W2353267094","https://openalex.org/W2552933951","https://openalex.org/W2610733803","https://openalex.org/W2614443510","https://openalex.org/W2791128115","https://openalex.org/W2791700952","https://openalex.org/W2792643794","https://openalex.org/W2803773316","https://openalex.org/W2892028068","https://openalex.org/W2902415760","https://openalex.org/W2906068309","https://openalex.org/W2911964244","https://openalex.org/W2918097835","https://openalex.org/W2947902519","https://openalex.org/W2958627485","https://openalex.org/W2962862931","https://openalex.org/W2964121744","https://openalex.org/W2996660422","https://openalex.org/W3047056765","https://openalex.org/W3080717832","https://openalex.org/W3099467215","https://openalex.org/W3109711993","https://openalex.org/W3118914438","https://openalex.org/W3121563664","https://openalex.org/W3166330950","https://openalex.org/W3170986249","https://openalex.org/W3172116721","https://openalex.org/W3202109374","https://openalex.org/W3208417416","https://openalex.org/W3216118543","https://openalex.org/W4210546025","https://openalex.org/W4281560073","https://openalex.org/W4287643567","https://openalex.org/W4293103915","https://openalex.org/W4293241248","https://openalex.org/W4293728835","https://openalex.org/W4295428419","https://openalex.org/W4318586192","https://openalex.org/W4324009419","https://openalex.org/W4366213854","https://openalex.org/W4367051143","https://openalex.org/W4378515394","https://openalex.org/W4381684345","https://openalex.org/W4385300704","https://openalex.org/W4385813776","https://openalex.org/W4387091672","https://openalex.org/W4387516871","https://openalex.org/W4388183259","https://openalex.org/W4389410203","https://openalex.org/W4390843047","https://openalex.org/W4392284216","https://openalex.org/W4392394280","https://openalex.org/W4399760340","https://openalex.org/W4402692409","https://openalex.org/W4408695435","https://openalex.org/W4409457188","https://openalex.org/W4409476656","https://openalex.org/W4410361725","https://openalex.org/W4412014552","https://openalex.org/W4413094485"],"related_works":[],"abstract_inverted_index":{"Our":[0],"findings":[1],"highlight":[2],"the":[3,12,42,48],"diagnostic":[4],"and":[5,11,24,34],"biomarker":[6],"discovery":[7],"potential":[8],"of":[9,22],"lncRNAs,":[10],"explainable-AI":[13],"framework":[14],"implemented":[15],"here":[16],"provides":[17],"a":[18],"systematic":[19],"large-scale":[20],"evaluation":[21],"lncRNA-only":[23],"integrative":[25],"models":[26],"for":[27,31],"multi-class":[28],"BRCA":[29,32],"subtyping":[30,33],"can":[35],"be":[36],"adopted":[37],"to":[38],"other":[39],"cancers":[40],"using":[41],"existing":[43],"cancer":[44],"transcriptomics":[45],"data":[46],"in":[47],"public":[49],"databases.":[50]},"counts_by_year":[],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2026-03-11T00:00:00"}
