{"id":"https://openalex.org/W7135214705","doi":"https://doi.org/10.3389/fbinf.2026.1722876","title":"A system-wide investigation into the phosphoregulatory network of TNIK and its cellular implications","display_name":"A system-wide investigation into the phosphoregulatory network of TNIK and its cellular implications","publication_year":2026,"publication_date":"2026-03-13","ids":{"openalex":"https://openalex.org/W7135214705","doi":"https://doi.org/10.3389/fbinf.2026.1722876","pmid":"https://pubmed.ncbi.nlm.nih.gov/41909809"},"language":"en","primary_location":{"id":"doi:10.3389/fbinf.2026.1722876","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2026.1722876","pdf_url":"https://public-pages-files-2025.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2026.1722876/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://public-pages-files-2025.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2026.1722876/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5118214343","display_name":"Akhila Sheela","orcid":null},"institutions":[{"id":"https://openalex.org/I158688498","display_name":"Yenepoya University","ror":"https://ror.org/029zfa075","country_code":"IN","type":"education","lineage":["https://openalex.org/I158688498"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Akhila Sheela","raw_affiliation_strings":["Centre for Integrative Omics Data Science (CIODS), Yenepoya (Deemed to be University)"],"affiliations":[{"raw_affiliation_string":"Centre for Integrative Omics Data Science (CIODS), Yenepoya (Deemed to be University)","institution_ids":["https://openalex.org/I158688498"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5122742639","display_name":"Suhail Subair","orcid":null},"institutions":[{"id":"https://openalex.org/I158688498","display_name":"Yenepoya University","ror":"https://ror.org/029zfa075","country_code":"IN","type":"education","lineage":["https://openalex.org/I158688498"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Suhail Subair","raw_affiliation_strings":["Centre for Integrative Omics Data Science (CIODS), Yenepoya (Deemed to be University)"],"affiliations":[{"raw_affiliation_string":"Centre for Integrative Omics Data Science (CIODS), Yenepoya (Deemed to be University)","institution_ids":["https://openalex.org/I158688498"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5116613041","display_name":"Samseera Ummar","orcid":null},"institutions":[{"id":"https://openalex.org/I158688498","display_name":"Yenepoya University","ror":"https://ror.org/029zfa075","country_code":"IN","type":"education","lineage":["https://openalex.org/I158688498"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Samseera Ummar","raw_affiliation_strings":["Centre for Integrative Omics Data Science (CIODS), Yenepoya (Deemed to be University)"],"affiliations":[{"raw_affiliation_string":"Centre for Integrative Omics Data Science (CIODS), Yenepoya (Deemed to be University)","institution_ids":["https://openalex.org/I158688498"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5093635312","display_name":"Althaf Mahin","orcid":"https://orcid.org/0009-0007-6017-4415"},"institutions":[{"id":"https://openalex.org/I158688498","display_name":"Yenepoya University","ror":"https://ror.org/029zfa075","country_code":"IN","type":"education","lineage":["https://openalex.org/I158688498"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Althaf Mahin","raw_affiliation_strings":["Centre for Integrative Omics Data Science (CIODS), Yenepoya (Deemed to be University)"],"affiliations":[{"raw_affiliation_string":"Centre for Integrative Omics Data Science (CIODS), Yenepoya (Deemed to be University)","institution_ids":["https://openalex.org/I158688498"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054514931","display_name":"Athira Perunelly Gopalakrishnan","orcid":null},"institutions":[{"id":"https://openalex.org/I158688498","display_name":"Yenepoya University","ror":"https://ror.org/029zfa075","country_code":"IN","type":"education","lineage":["https://openalex.org/I158688498"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Athira Perunelly Gopalakrishnan","raw_affiliation_strings":["Centre for Integrative Omics Data Science (CIODS), Yenepoya (Deemed to be University)"],"affiliations":[{"raw_affiliation_string":"Centre for Integrative Omics Data Science (CIODS), Yenepoya (Deemed to be University)","institution_ids":["https://openalex.org/I158688498"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5124731107","display_name":"Rajesh Raju","orcid":null},"institutions":[{"id":"https://openalex.org/I158688498","display_name":"Yenepoya University","ror":"https://ror.org/029zfa075","country_code":"IN","type":"education","lineage":["https://openalex.org/I158688498"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Rajesh Raju","raw_affiliation_strings":["Centre for Integrative Omics Data Science (CIODS), Yenepoya (Deemed to be University)"],"affiliations":[{"raw_affiliation_string":"Centre for Integrative Omics Data Science (CIODS), Yenepoya (Deemed to be University)","institution_ids":["https://openalex.org/I158688498"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5021768526","display_name":"Sowmya Soman","orcid":"https://orcid.org/0009-0003-1452-2627"},"institutions":[{"id":"https://openalex.org/I158688498","display_name":"Yenepoya University","ror":"https://ror.org/029zfa075","country_code":"IN","type":"education","lineage":["https://openalex.org/I158688498"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Sowmya Soman","raw_affiliation_strings":["Centre for Integrative Omics Data Science (CIODS), Yenepoya (Deemed to be University)"],"affiliations":[{"raw_affiliation_string":"Centre for Integrative Omics Data Science (CIODS), Yenepoya (Deemed to be University)","institution_ids":["https://openalex.org/I158688498"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5118214343"],"corresponding_institution_ids":["https://openalex.org/I158688498"],"apc_list":{"value":1900,"currency":"USD","value_usd":1900},"apc_paid":{"value":1900,"currency":"USD","value_usd":1900},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.57829075,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"6","issue":null,"first_page":"1722876","last_page":"1722876"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10169","display_name":"Protein Kinase Regulation and GTPase Signaling","score":0.4415000081062317,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10169","display_name":"Protein Kinase Regulation and GTPase Signaling","score":0.4415000081062317,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T14065","display_name":"Biological Research and Disease Studies","score":0.05310000106692314,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10929","display_name":"Wnt/\u03b2-catenin signaling in development and cancer","score":0.04809999838471413,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/kinase","display_name":"Kinase","score":0.5698000192642212},{"id":"https://openalex.org/keywords/wnt-signaling-pathway","display_name":"Wnt signaling pathway","score":0.5570999979972839},{"id":"https://openalex.org/keywords/cytoskeleton","display_name":"Cytoskeleton","score":0.48429998755455017},{"id":"https://openalex.org/keywords/upstream-and-downstream","display_name":"Upstream and downstream (DNA)","score":0.43299999833106995},{"id":"https://openalex.org/keywords/signal-transduction","display_name":"Signal transduction","score":0.39500001072883606},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.3562000095844269},{"id":"https://openalex.org/keywords/phosphorylation","display_name":"Phosphorylation","score":0.33570000529289246}],"concepts":[{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.5874000191688538},{"id":"https://openalex.org/C184235292","wikidata":"https://www.wikidata.org/wiki/Q421851","display_name":"Kinase","level":2,"score":0.5698000192642212},{"id":"https://openalex.org/C137620995","wikidata":"https://www.wikidata.org/wiki/Q155769","display_name":"Wnt signaling pathway","level":3,"score":0.5570999979972839},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5260000228881836},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5005999803543091},{"id":"https://openalex.org/C142669718","wikidata":"https://www.wikidata.org/wiki/Q154626","display_name":"Cytoskeleton","level":3,"score":0.48429998755455017},{"id":"https://openalex.org/C158980903","wikidata":"https://www.wikidata.org/wiki/Q7899329","display_name":"Upstream and downstream (DNA)","level":3,"score":0.43299999833106995},{"id":"https://openalex.org/C62478195","wikidata":"https://www.wikidata.org/wiki/Q828130","display_name":"Signal transduction","level":2,"score":0.39500001072883606},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.3562000095844269},{"id":"https://openalex.org/C11960822","wikidata":"https://www.wikidata.org/wiki/Q242736","display_name":"Phosphorylation","level":2,"score":0.33570000529289246},{"id":"https://openalex.org/C6675166","wikidata":"https://www.wikidata.org/wiki/Q7187538","display_name":"Phosphoproteomics","level":5,"score":0.3228999972343445},{"id":"https://openalex.org/C2993400109","wikidata":"https://www.wikidata.org/wiki/Q329638","display_name":"Actin cytoskeleton","level":4,"score":0.322299987077713},{"id":"https://openalex.org/C34905852","wikidata":"https://www.wikidata.org/wiki/Q3943646","display_name":"Stable isotope labeling by amino acids in cell culture","level":4,"score":0.31290000677108765},{"id":"https://openalex.org/C174510640","wikidata":"https://www.wikidata.org/wiki/Q489618","display_name":"HEK 293 cells","level":3,"score":0.3109999895095825},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.3102000057697296},{"id":"https://openalex.org/C183786373","wikidata":"https://www.wikidata.org/wiki/Q5964993","display_name":"Signal transducing adaptor protein","level":3,"score":0.3010999858379364},{"id":"https://openalex.org/C137361374","wikidata":"https://www.wikidata.org/wiki/Q6714442","display_name":"MAP kinase kinase kinase","level":4,"score":0.28200000524520874},{"id":"https://openalex.org/C1491633281","wikidata":"https://www.wikidata.org/wiki/Q7868","display_name":"Cell","level":2,"score":0.2759000062942505},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.26510000228881836}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.3389/fbinf.2026.1722876","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2026.1722876","pdf_url":"https://public-pages-files-2025.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2026.1722876/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:41909809","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41909809","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:13021626","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13021626/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Front Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3389/fbinf.2026.1722876","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2026.1722876","pdf_url":"https://public-pages-files-2025.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2026.1722876/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W7135214705.pdf","grobid_xml":"https://content.openalex.org/works/W7135214705.grobid-xml"},"referenced_works_count":123,"referenced_works":["https://openalex.org/W184300614","https://openalex.org/W1487275803","https://openalex.org/W1528813084","https://openalex.org/W1967901428","https://openalex.org/W1973402495","https://openalex.org/W1974140472","https://openalex.org/W1980266242","https://openalex.org/W1984951395","https://openalex.org/W1985708275","https://openalex.org/W1986168751","https://openalex.org/W1988870503","https://openalex.org/W1992918503","https://openalex.org/W1993276946","https://openalex.org/W1995430085","https://openalex.org/W2000432680","https://openalex.org/W2004291184","https://openalex.org/W2015173256","https://openalex.org/W2023561674","https://openalex.org/W2029958661","https://openalex.org/W2031028006","https://openalex.org/W2043764521","https://openalex.org/W2046966774","https://openalex.org/W2057194283","https://openalex.org/W2057875362","https://openalex.org/W2058524550","https://openalex.org/W2059034651","https://openalex.org/W2067037464","https://openalex.org/W2068256560","https://openalex.org/W2074317678","https://openalex.org/W2085652779","https://openalex.org/W2088256306","https://openalex.org/W2089605820","https://openalex.org/W2091437677","https://openalex.org/W2095777014","https://openalex.org/W2104452138","https://openalex.org/W2105325784","https://openalex.org/W2111476723","https://openalex.org/W2119327914","https://openalex.org/W2127381299","https://openalex.org/W2135474029","https://openalex.org/W2136623153","https://openalex.org/W2148156146","https://openalex.org/W2154142433","https://openalex.org/W2154907940","https://openalex.org/W2159675211","https://openalex.org/W2162442333","https://openalex.org/W2165691575","https://openalex.org/W2167098838","https://openalex.org/W2192016206","https://openalex.org/W2323944145","https://openalex.org/W2341912159","https://openalex.org/W2545015563","https://openalex.org/W2611624100","https://openalex.org/W2736644019","https://openalex.org/W2736907610","https://openalex.org/W2790373475","https://openalex.org/W2803470013","https://openalex.org/W2884734127","https://openalex.org/W2889159395","https://openalex.org/W2898466121","https://openalex.org/W2913065146","https://openalex.org/W2923560887","https://openalex.org/W2945237878","https://openalex.org/W2947215881","https://openalex.org/W2973708704","https://openalex.org/W2994464657","https://openalex.org/W3000873660","https://openalex.org/W3002246007","https://openalex.org/W3014001535","https://openalex.org/W3033256212","https://openalex.org/W3045514492","https://openalex.org/W3047172038","https://openalex.org/W3093053585","https://openalex.org/W3117152265","https://openalex.org/W3120308493","https://openalex.org/W3120599355","https://openalex.org/W3121865115","https://openalex.org/W3134408499","https://openalex.org/W3163396627","https://openalex.org/W3175562628","https://openalex.org/W3182517402","https://openalex.org/W3191978882","https://openalex.org/W3206811245","https://openalex.org/W3215103363","https://openalex.org/W4212788864","https://openalex.org/W4226032791","https://openalex.org/W4280516847","https://openalex.org/W4293162956","https://openalex.org/W4294733241","https://openalex.org/W4304789197","https://openalex.org/W4307419810","https://openalex.org/W4307423229","https://openalex.org/W4308559041","https://openalex.org/W4309506674","https://openalex.org/W4315642941","https://openalex.org/W4323046362","https://openalex.org/W4367184115","https://openalex.org/W4379230237","https://openalex.org/W4380575867","https://openalex.org/W4380730090","https://openalex.org/W4382141546","https://openalex.org/W4383198810","https://openalex.org/W4384339327","https://openalex.org/W4385295107","https://openalex.org/W4385694006","https://openalex.org/W4386365275","https://openalex.org/W4387799014","https://openalex.org/W4388694653","https://openalex.org/W4389455318","https://openalex.org/W4389580764","https://openalex.org/W4392451032","https://openalex.org/W4392661321","https://openalex.org/W4393234169","https://openalex.org/W4393947300","https://openalex.org/W4398185193","https://openalex.org/W4405182432","https://openalex.org/W4405527867","https://openalex.org/W4405952743","https://openalex.org/W4408389267","https://openalex.org/W4408414752","https://openalex.org/W4410946276","https://openalex.org/W4411347102","https://openalex.org/W4411918782"],"related_works":[],"abstract_inverted_index":{"Considering":[0],"the":[1],"challenges":[2],"in":[3,24,47],"targeted":[4],"experimental":[5],"analysis":[6,13],"of":[7,44],"these":[8,21],"sites,":[9],"a":[10],"global":[11],"co-regulation":[12],"approach":[14],"was":[15],"employed.":[16],"Our":[17],"results":[18],"show":[19],"that":[20],"phosphorylation":[22],"sites":[23],"TNIK":[25],"can":[26],"influence":[27],"carcinogenesis":[28,48],"and":[29,49],"related":[30],"biological":[31],"functions.":[32],"It":[33],"offers":[34],"new":[35],"insights":[36],"into":[37],"TNIK-mediated":[38],"cellular":[39],"functions,":[40],"deepening":[41],"our":[42],"comprehension":[43],"its":[45],"involvement":[46],"RNA":[50],"splicing.":[51]},"counts_by_year":[],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2026-03-14T00:00:00"}
