{"id":"https://openalex.org/W7125138617","doi":"https://doi.org/10.3389/fbinf.2025.1744094","title":"Cross-disease transcriptomic meta-analysis and network pharmacology reveal key therapeutic targets in rheumatoid arthritis, systemic lupus erythematosus and multiple sclerosis","display_name":"Cross-disease transcriptomic meta-analysis and network pharmacology reveal key therapeutic targets in rheumatoid arthritis, systemic lupus erythematosus and multiple sclerosis","publication_year":2026,"publication_date":"2026-01-21","ids":{"openalex":"https://openalex.org/W7125138617","doi":"https://doi.org/10.3389/fbinf.2025.1744094","pmid":"https://pubmed.ncbi.nlm.nih.gov/41648862"},"language":"en","primary_location":{"id":"doi:10.3389/fbinf.2025.1744094","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2025.1744094","pdf_url":null,"source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.3389/fbinf.2025.1744094","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5123477130","display_name":"K. Lakshmi","orcid":null},"institutions":[{"id":"https://openalex.org/I876193797","display_name":"Vellore Institute of Technology University","ror":"https://ror.org/00qzypv28","country_code":"IN","type":"education","lineage":["https://openalex.org/I876193797"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"K. Lakshmi","raw_affiliation_strings":["Integrative Multiomics Lab, Department of Bio Sciences, School of Bio Sciences and Technology, Vellore Institute of Technology"],"affiliations":[{"raw_affiliation_string":"Integrative Multiomics Lab, Department of Bio Sciences, School of Bio Sciences and Technology, Vellore Institute of Technology","institution_ids":["https://openalex.org/I876193797"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5123469735","display_name":"Sundararajan Vino","orcid":null},"institutions":[{"id":"https://openalex.org/I876193797","display_name":"Vellore Institute of Technology University","ror":"https://ror.org/00qzypv28","country_code":"IN","type":"education","lineage":["https://openalex.org/I876193797"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Sundararajan Vino","raw_affiliation_strings":["Integrative Multiomics Lab, Department of Bio Sciences, School of Bio Sciences and Technology, Vellore Institute of Technology"],"affiliations":[{"raw_affiliation_string":"Integrative Multiomics Lab, Department of Bio Sciences, School of Bio Sciences and Technology, Vellore Institute of Technology","institution_ids":["https://openalex.org/I876193797"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5123469735"],"corresponding_institution_ids":["https://openalex.org/I876193797"],"apc_list":{"value":1900,"currency":"USD","value_usd":1900},"apc_paid":{"value":1900,"currency":"USD","value_usd":1900},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.18407835,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"5","issue":null,"first_page":"1744094","last_page":"1744094"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10200","display_name":"Rheumatoid Arthritis Research and Therapies","score":0.26570001244544983,"subfield":{"id":"https://openalex.org/subfields/2745","display_name":"Rheumatology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10200","display_name":"Rheumatoid Arthritis Research and Therapies","score":0.26570001244544983,"subfield":{"id":"https://openalex.org/subfields/2745","display_name":"Rheumatology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.210999995470047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10308","display_name":"Systemic Lupus Erythematosus Research","score":0.08470000326633453,"subfield":{"id":"https://openalex.org/subfields/2745","display_name":"Rheumatology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/multiple-sclerosis","display_name":"Multiple sclerosis","score":0.805899977684021},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.7681999802589417},{"id":"https://openalex.org/keywords/autoimmune-disease","display_name":"Autoimmune disease","score":0.6504999995231628},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.607200026512146},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4724999964237213},{"id":"https://openalex.org/keywords/lupus-erythematosus","display_name":"Lupus erythematosus","score":0.43230000138282776},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.4092000126838684},{"id":"https://openalex.org/keywords/rheumatoid-arthritis","display_name":"Rheumatoid arthritis","score":0.37869998812675476}],"concepts":[{"id":"https://openalex.org/C2780640218","wikidata":"https://www.wikidata.org/wiki/Q8277","display_name":"Multiple sclerosis","level":2,"score":0.805899977684021},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.7681999802589417},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.7067000269889832},{"id":"https://openalex.org/C2779075594","wikidata":"https://www.wikidata.org/wiki/Q8084905","display_name":"Autoimmune disease","level":3,"score":0.6504999995231628},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.607200026512146},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.5503000020980835},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4724999964237213},{"id":"https://openalex.org/C2775915377","wikidata":"https://www.wikidata.org/wiki/Q188297","display_name":"Lupus erythematosus","level":3,"score":0.43230000138282776},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.4092000126838684},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3797000050544739},{"id":"https://openalex.org/C2777575956","wikidata":"https://www.wikidata.org/wiki/Q187255","display_name":"Rheumatoid arthritis","level":2,"score":0.37869998812675476},{"id":"https://openalex.org/C179926584","wikidata":"https://www.wikidata.org/wiki/Q207714","display_name":"Transcription (linguistics)","level":2,"score":0.35440000891685486},{"id":"https://openalex.org/C2780130043","wikidata":"https://www.wikidata.org/wiki/Q192360","display_name":"Autoimmunity","level":3,"score":0.3422999978065491},{"id":"https://openalex.org/C2992264114","wikidata":"https://www.wikidata.org/wiki/Q1394551","display_name":"Clinical disease","level":3,"score":0.3222000002861023},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.30559998750686646},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.29910001158714294},{"id":"https://openalex.org/C2778384578","wikidata":"https://www.wikidata.org/wiki/Q16930687","display_name":"Therapeutic approach","level":3,"score":0.29319998621940613},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.287200003862381},{"id":"https://openalex.org/C2776912625","wikidata":"https://www.wikidata.org/wiki/Q1485","display_name":"Systemic lupus erythematosus","level":3,"score":0.2840000092983246},{"id":"https://openalex.org/C2776670291","wikidata":"https://www.wikidata.org/wiki/Q1779300","display_name":"Connective tissue disease","level":4,"score":0.27250000834465027}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3389/fbinf.2025.1744094","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2025.1744094","pdf_url":null,"source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:41648862","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41648862","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:2867d7c7a7ec4acfb0ac088e645a647e","is_oa":true,"landing_page_url":"https://doaj.org/article/2867d7c7a7ec4acfb0ac088e645a647e","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Bioinformatics, Vol 5 (2026)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:11676179","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12868135","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3389/fbinf.2025.1744094","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2025.1744094","pdf_url":null,"source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4394022524356842,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":40,"referenced_works":["https://openalex.org/W1031578623","https://openalex.org/W1977921870","https://openalex.org/W2006194219","https://openalex.org/W2034949980","https://openalex.org/W2094596462","https://openalex.org/W2103912979","https://openalex.org/W2107281049","https://openalex.org/W2118258530","https://openalex.org/W2134967712","https://openalex.org/W2149840720","https://openalex.org/W2151975241","https://openalex.org/W2158217645","https://openalex.org/W2159596132","https://openalex.org/W2159675211","https://openalex.org/W2184196649","https://openalex.org/W2548458393","https://openalex.org/W2790693853","https://openalex.org/W2900569176","https://openalex.org/W2944545583","https://openalex.org/W2951057964","https://openalex.org/W2970358232","https://openalex.org/W2983166786","https://openalex.org/W2986624514","https://openalex.org/W3094005749","https://openalex.org/W3107626709","https://openalex.org/W3160529154","https://openalex.org/W3190476033","https://openalex.org/W4283754242","https://openalex.org/W4283810665","https://openalex.org/W4293558178","https://openalex.org/W4389752889","https://openalex.org/W4391781750","https://openalex.org/W4393282884","https://openalex.org/W4400586406","https://openalex.org/W4401729032","https://openalex.org/W4405131030","https://openalex.org/W4411386776","https://openalex.org/W4415172561","https://openalex.org/W4415767645","https://openalex.org/W4415904989"],"related_works":[],"abstract_inverted_index":{"These":[0],"findings":[1],"explored":[2],"identifying":[3],"the":[4,9,30,37],"DEGs":[5],"among":[6],"shade":[7],"of":[8,36],"autoimmune":[10,38],"disease":[11,31],"RA,":[12],"SLE,":[13],"MS,":[14],"and":[15],"this":[16],"hub":[17],"gene":[18],"are":[19,24],"associated":[20],"with":[21],"transcription":[22],"factors":[23],"most":[25],"crucial":[26],"role":[27],"play":[28],"in":[29],"potentially":[32],"clinical":[33],"therapeutic":[34],"targets":[35],"disease.":[39]},"counts_by_year":[],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2026-01-22T00:00:00"}
