{"id":"https://openalex.org/W7119215254","doi":"https://doi.org/10.3389/fbinf.2025.1725145","title":"Stain-free artificial intelligence-assisted light microscopy for the identification of leukocyte morphology change in presence of bacteria","display_name":"Stain-free artificial intelligence-assisted light microscopy for the identification of leukocyte morphology change in presence of bacteria","publication_year":2026,"publication_date":"2026-01-06","ids":{"openalex":"https://openalex.org/W7119215254","doi":"https://doi.org/10.3389/fbinf.2025.1725145","pmid":"https://pubmed.ncbi.nlm.nih.gov/41568057"},"language":"en","primary_location":{"id":"doi:10.3389/fbinf.2025.1725145","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2025.1725145","pdf_url":"https://public-pages-files-2025.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1725145/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://public-pages-files-2025.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1725145/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5112458957","display_name":"Alexander Hunt","orcid":null},"institutions":[{"id":"https://openalex.org/I4210151647","display_name":"Centre for Inflammation Research","ror":"https://ror.org/05wcr1b38","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210087105","https://openalex.org/I4210151647","https://openalex.org/I90344618","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Alexander Hunt","raw_affiliation_strings":["Centre for Inflammation Research, Institute for Regeneration and Repair, The University of Edinburgh, Edinburgh, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Inflammation Research, Institute for Regeneration and Repair, The University of Edinburgh, Edinburgh, United Kingdom","institution_ids":["https://openalex.org/I4210151647","https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069629086","display_name":"Holger Schulze","orcid":"https://orcid.org/0000-0002-6446-2824"},"institutions":[{"id":"https://openalex.org/I4210151647","display_name":"Centre for Inflammation Research","ror":"https://ror.org/05wcr1b38","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210087105","https://openalex.org/I4210151647","https://openalex.org/I90344618","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Holger Schulze","raw_affiliation_strings":["Centre for Inflammation Research, Institute for Regeneration and Repair, The University of Edinburgh, Edinburgh, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Inflammation Research, Institute for Regeneration and Repair, The University of Edinburgh, Edinburgh, United Kingdom","institution_ids":["https://openalex.org/I4210151647","https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069811614","display_name":"Kay Samuel","orcid":"https://orcid.org/0000-0002-2333-0753"},"institutions":[{"id":"https://openalex.org/I88981905","display_name":"Scottish National Blood Transfusion Service","ror":"https://ror.org/05ydk8712","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I88981905"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Kay Samuel","raw_affiliation_strings":["Tissues, Cells and Advanced Therapeutics, Scottish National Blood Transfusion Service, NHS National Services Scotland, Edinburgh, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tissues, Cells and Advanced Therapeutics, Scottish National Blood Transfusion Service, NHS National Services Scotland, Edinburgh, United Kingdom","institution_ids":["https://openalex.org/I88981905"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020686179","display_name":"Robert B. Fisher","orcid":"https://orcid.org/0000-0001-6860-9371"},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Robert B. Fisher","raw_affiliation_strings":["School of Informatics, The University of Edinburgh, Edinburgh, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Informatics, The University of Edinburgh, Edinburgh, United Kingdom","institution_ids":["https://openalex.org/I98677209"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077708554","display_name":"Till T. Bachmann","orcid":"https://orcid.org/0000-0001-6121-2021"},"institutions":[{"id":"https://openalex.org/I4210151647","display_name":"Centre for Inflammation Research","ror":"https://ror.org/05wcr1b38","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210087105","https://openalex.org/I4210151647","https://openalex.org/I90344618","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Till T. Bachmann","raw_affiliation_strings":["Centre for Inflammation Research, Institute for Regeneration and Repair, The University of Edinburgh, Edinburgh, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Inflammation Research, Institute for Regeneration and Repair, The University of Edinburgh, Edinburgh, United Kingdom","institution_ids":["https://openalex.org/I4210151647","https://openalex.org/I98677209"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5077708554"],"corresponding_institution_ids":["https://openalex.org/I4210151647","https://openalex.org/I98677209"],"apc_list":{"value":1900,"currency":"USD","value_usd":1900},"apc_paid":{"value":1900,"currency":"USD","value_usd":1900},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.03113553,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"5","issue":null,"first_page":"1725145","last_page":"1725145"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12167","display_name":"Bacterial Identification and Susceptibility Testing","score":0.5336999893188477,"subfield":{"id":"https://openalex.org/subfields/1308","display_name":"Clinical Biochemistry"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12167","display_name":"Bacterial Identification and Susceptibility Testing","score":0.5336999893188477,"subfield":{"id":"https://openalex.org/subfields/1308","display_name":"Clinical Biochemistry"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.10599999874830246,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11393","display_name":"Biosensors and Analytical Detection","score":0.08900000154972076,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microscopy","display_name":"Microscopy","score":0.6729000210762024},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.6395000219345093},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.53329998254776},{"id":"https://openalex.org/keywords/staining","display_name":"Staining","score":0.5239999890327454},{"id":"https://openalex.org/keywords/fluorescence-microscope","display_name":"Fluorescence microscope","score":0.5034000277519226},{"id":"https://openalex.org/keywords/bright-field-microscopy","display_name":"Bright-field microscopy","score":0.38179999589920044}],"concepts":[{"id":"https://openalex.org/C147080431","wikidata":"https://www.wikidata.org/wiki/Q1074953","display_name":"Microscopy","level":2,"score":0.6729000210762024},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.6395000219345093},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.53329998254776},{"id":"https://openalex.org/C74864618","wikidata":"https://www.wikidata.org/wiki/Q2332446","display_name":"Staining","level":2,"score":0.5239999890327454},{"id":"https://openalex.org/C169274487","wikidata":"https://www.wikidata.org/wiki/Q840211","display_name":"Fluorescence microscope","level":3,"score":0.5034000277519226},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.43700000643730164},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4325999915599823},{"id":"https://openalex.org/C14764753","wikidata":"https://www.wikidata.org/wiki/Q905225","display_name":"Bright-field microscopy","level":3,"score":0.38179999589920044},{"id":"https://openalex.org/C499950583","wikidata":"https://www.wikidata.org/wiki/Q183252","display_name":"Morphology (biology)","level":2,"score":0.3783000111579895},{"id":"https://openalex.org/C77017923","wikidata":"https://www.wikidata.org/wiki/Q912313","display_name":"Optical microscope","level":3,"score":0.36579999327659607},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.36230000853538513},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.3521000146865845},{"id":"https://openalex.org/C153911025","wikidata":"https://www.wikidata.org/wiki/Q7202","display_name":"Molecular biology","level":1,"score":0.2892000079154968},{"id":"https://openalex.org/C12554922","wikidata":"https://www.wikidata.org/wiki/Q7100","display_name":"Biophysics","level":1,"score":0.28369998931884766},{"id":"https://openalex.org/C151193507","wikidata":"https://www.wikidata.org/wiki/Q898815","display_name":"Phase contrast microscopy","level":2,"score":0.28360000252723694},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.27410000562667847},{"id":"https://openalex.org/C2992960401","wikidata":"https://www.wikidata.org/wiki/Q2448456","display_name":"Fluorescent staining","level":3,"score":0.2685999870300293}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3389/fbinf.2025.1725145","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2025.1725145","pdf_url":"https://public-pages-files-2025.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1725145/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:41568057","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41568057","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:7827c0b117024ffeb7a54d1e1a65c15f","is_oa":true,"landing_page_url":"https://doaj.org/article/7827c0b117024ffeb7a54d1e1a65c15f","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Bioinformatics, Vol 5 (2026)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:12816271","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12816271/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Front Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3389/fbinf.2025.1725145","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2025.1725145","pdf_url":"https://public-pages-files-2025.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1725145/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W7119215254.pdf","grobid_xml":"https://content.openalex.org/works/W7119215254.grobid-xml"},"referenced_works_count":74,"referenced_works":["https://openalex.org/W1593871259","https://openalex.org/W1841423094","https://openalex.org/W1972521987","https://openalex.org/W1984574450","https://openalex.org/W2022276852","https://openalex.org/W2028407989","https://openalex.org/W2028473226","https://openalex.org/W2037520677","https://openalex.org/W2053106418","https://openalex.org/W2056256276","https://openalex.org/W2067059686","https://openalex.org/W2070564311","https://openalex.org/W2078677823","https://openalex.org/W2096428863","https://openalex.org/W2101706685","https://openalex.org/W2107021381","https://openalex.org/W2111021139","https://openalex.org/W2116240218","https://openalex.org/W2122523196","https://openalex.org/W2126875440","https://openalex.org/W2135287086","https://openalex.org/W2276226946","https://openalex.org/W2297664645","https://openalex.org/W2320328374","https://openalex.org/W2340359596","https://openalex.org/W2469647138","https://openalex.org/W2567354004","https://openalex.org/W2598466329","https://openalex.org/W2609271578","https://openalex.org/W2626120438","https://openalex.org/W2726820748","https://openalex.org/W2761798139","https://openalex.org/W2763960534","https://openalex.org/W2765372360","https://openalex.org/W2793704088","https://openalex.org/W2794050874","https://openalex.org/W2800436528","https://openalex.org/W2801032953","https://openalex.org/W2889836695","https://openalex.org/W2902868033","https://openalex.org/W2941747284","https://openalex.org/W2954996726","https://openalex.org/W2967035454","https://openalex.org/W2977502675","https://openalex.org/W2997015575","https://openalex.org/W3004611567","https://openalex.org/W3011721937","https://openalex.org/W3017374234","https://openalex.org/W3110281530","https://openalex.org/W3110773918","https://openalex.org/W3119624508","https://openalex.org/W3126207216","https://openalex.org/W3135020274","https://openalex.org/W3160587475","https://openalex.org/W3180328126","https://openalex.org/W3194820635","https://openalex.org/W3208418414","https://openalex.org/W4200013025","https://openalex.org/W4213101968","https://openalex.org/W4220967176","https://openalex.org/W4284884567","https://openalex.org/W4306164209","https://openalex.org/W4308515701","https://openalex.org/W4321241621","https://openalex.org/W4366292563","https://openalex.org/W4383099252","https://openalex.org/W4384695221","https://openalex.org/W4386200934","https://openalex.org/W4386409837","https://openalex.org/W4387001996","https://openalex.org/W4387692094","https://openalex.org/W4391573779","https://openalex.org/W4402264463","https://openalex.org/W4413969700"],"related_works":[],"abstract_inverted_index":{"Background":[0],"Rapid":[1],"detection":[2,157,195],"of":[3,69,196],"bacterial":[4,202],"infections":[5],"through":[6],"leukocyte":[7,72,197],"activation":[8,166,173,198],"analysis":[9],"could":[10,226],"significantly":[11],"reduce":[12],"diagnostic":[13],"timeframes":[14],"from":[15],"days":[16],"to":[17,53,201,229],"hours.":[18],"Traditional":[19],"methods":[20],"like":[21],"flow":[22,81],"cytometry":[23],"and":[24,34,76,78,117,208,225],"biomarker":[25],"assays":[26],"face":[27],"limitations":[28],"including":[29],"technical":[30],"complexity,":[31],"equipment":[32],"requirements,":[33],"delayed":[35],"results.":[36],"Methods":[37],"We":[38],"developed":[39],"a":[40,125],"dual":[41],"artificial":[42],"neural":[43],"network":[44,105],"system":[45,84,143],"combining":[46],"stain-free":[47],"light":[48],"microscopy":[49,190],"with":[50,92,180,204,232],"microfluidic":[51],"technology":[52,218],"detect":[54],"morphological":[55,233],"changes":[56],"in":[57,199],"activated":[58,146],"leukocytes.":[59],"YOLOv4":[60],"networks":[61],"were":[62],"trained":[63,215],"using":[64],"five-fold":[65],"cross-validation":[66],"on":[67,87],"images":[68],"chemically":[70],"stimulated":[71],"subpopulations":[73],"(lymphocytes,":[74],"monocytes,":[75],"neutrophils)":[77],"validated":[79],"against":[80],"cytometry.":[82],"The":[83,102,217],"was":[85],"tested":[86],"whole":[88,139],"blood":[89,140,155],"samples":[90],"spiked":[91],"E.":[93],"coli":[94],"at":[95,151,168],"clinically":[96],"relevant":[97],"concentrations":[98,152],"(10\u2013250":[99],"CFU/mL).":[100,162],"Results":[101],"optimized":[103],"four-class":[104],"achieved":[106,131],"high":[107],"performance":[108],"metrics":[109],"for":[110,129,211,221],"lymphocytes":[111],"(F1":[112,119],"score:":[113,120],"80.1%":[114],"\u00b1":[115,122,133,160],"2.5%)":[116],"neutrophils":[118],"91.7%":[121],"1.7%),":[123],"while":[124,171],"specialized":[126,212],"binary":[127],"classifier":[128],"monocytes":[130],"97.0%":[132],"2.8%":[134],"F1":[135],"score.":[136],"In":[137],"bacteria-spiked":[138],"experiments,":[141],"the":[142],"successfully":[144],"detected":[145],"leukocytes":[147],"within":[148],"30":[149],"min":[150],"approaching":[153],"clinical":[154],"culture":[156],"limits":[158],"(11.11":[159],"4.79":[161],"Neutrophils":[163],"showed":[164],"rapid":[165],"peaking":[167],"1\u20133":[169],"h,":[170,178],"lymphocyte":[172],"increased":[174],"gradually":[175],"over":[176],"6\u201312":[177],"consistent":[179],"innate":[181],"versus":[182],"adaptive":[183],"immune":[184],"response":[185,200],"kinetics.":[186],"Conclusion":[187],"This":[188],"AI-assisted":[189],"platform":[191],"enables":[192],"rapid,":[193],"label-free":[194],"infection":[203,223],"minimal":[205],"sample":[206],"handling":[207],"no":[209],"requirement":[210],"staining":[213],"or":[214],"technicians.":[216],"demonstrates":[219],"potential":[220],"accelerating":[222],"diagnosis":[224],"be":[227],"extended":[228],"other":[230],"pathologies":[231],"manifestations.":[234]},"counts_by_year":[],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2026-01-08T00:00:00"}
