{"id":"https://openalex.org/W4416402962","doi":"https://doi.org/10.3389/fbinf.2025.1710926","title":"Completing a molecular timetree of Afrotheria","display_name":"Completing a molecular timetree of Afrotheria","publication_year":2025,"publication_date":"2025-11-19","ids":{"openalex":"https://openalex.org/W4416402962","doi":"https://doi.org/10.3389/fbinf.2025.1710926","pmid":"https://pubmed.ncbi.nlm.nih.gov/41346778"},"language":"en","primary_location":{"id":"doi:10.3389/fbinf.2025.1710926","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2025.1710926","pdf_url":"https://public-pages-files-2025.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1710926/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://public-pages-files-2025.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1710926/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091689845","display_name":"Jack M. Craig","orcid":"https://orcid.org/0000-0003-0590-5944"},"institutions":[{"id":"https://openalex.org/I84392919","display_name":"Temple University","ror":"https://ror.org/00kx1jb78","country_code":"US","type":"education","lineage":["https://openalex.org/I84392919"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jack M. Craig","raw_affiliation_strings":["Center for Biodiversity, Temple University, Philadelphia, PA, United States","Department of Biology, Temple University, Philadelphia, PA, United States","Institute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, PA, United States"],"affiliations":[{"raw_affiliation_string":"Center for Biodiversity, Temple University, Philadelphia, PA, United States","institution_ids":["https://openalex.org/I84392919"]},{"raw_affiliation_string":"Department of Biology, Temple University, Philadelphia, PA, United States","institution_ids":["https://openalex.org/I84392919"]},{"raw_affiliation_string":"Institute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, PA, United States","institution_ids":["https://openalex.org/I84392919"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5120414179","display_name":"Whitney L. Fisher","orcid":null},"institutions":[{"id":"https://openalex.org/I84392919","display_name":"Temple University","ror":"https://ror.org/00kx1jb78","country_code":"US","type":"education","lineage":["https://openalex.org/I84392919"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Whitney L. Fisher","raw_affiliation_strings":["Institute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, PA, United States"],"affiliations":[{"raw_affiliation_string":"Institute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, PA, United States","institution_ids":["https://openalex.org/I84392919"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Allan S. Thomas","orcid":null},"institutions":[{"id":"https://openalex.org/I84392919","display_name":"Temple University","ror":"https://ror.org/00kx1jb78","country_code":"US","type":"education","lineage":["https://openalex.org/I84392919"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Allan S. Thomas","raw_affiliation_strings":["Institute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, PA, United States"],"affiliations":[{"raw_affiliation_string":"Institute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, PA, United States","institution_ids":["https://openalex.org/I84392919"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102858720","display_name":"Simon Hedges","orcid":"https://orcid.org/0000-0001-8438-4571"},"institutions":[{"id":"https://openalex.org/I84392919","display_name":"Temple University","ror":"https://ror.org/00kx1jb78","country_code":"US","type":"education","lineage":["https://openalex.org/I84392919"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"S. Blair Hedges","raw_affiliation_strings":["Center for Biodiversity, Temple University, Philadelphia, PA, United States","Department of Biology, Temple University, Philadelphia, PA, United States","Institute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, PA, United States"],"affiliations":[{"raw_affiliation_string":"Center for Biodiversity, Temple University, Philadelphia, PA, United States","institution_ids":["https://openalex.org/I84392919"]},{"raw_affiliation_string":"Department of Biology, Temple University, Philadelphia, PA, United States","institution_ids":["https://openalex.org/I84392919"]},{"raw_affiliation_string":"Institute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, PA, United States","institution_ids":["https://openalex.org/I84392919"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100680948","display_name":"Sudhir Kumar","orcid":"https://orcid.org/0000-0002-9918-8212"},"institutions":[{"id":"https://openalex.org/I84392919","display_name":"Temple University","ror":"https://ror.org/00kx1jb78","country_code":"US","type":"education","lineage":["https://openalex.org/I84392919"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Sudhir Kumar","raw_affiliation_strings":["Center for Biodiversity, Temple University, Philadelphia, PA, United States","Department of Biology, Temple University, Philadelphia, PA, United States","Institute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, PA, United States"],"affiliations":[{"raw_affiliation_string":"Center for Biodiversity, Temple University, Philadelphia, PA, United States","institution_ids":["https://openalex.org/I84392919"]},{"raw_affiliation_string":"Department of Biology, Temple University, Philadelphia, PA, United States","institution_ids":["https://openalex.org/I84392919"]},{"raw_affiliation_string":"Institute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, PA, United States","institution_ids":["https://openalex.org/I84392919"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5100680948"],"corresponding_institution_ids":["https://openalex.org/I84392919"],"apc_list":{"value":1900,"currency":"USD","value_usd":1900},"apc_paid":{"value":1900,"currency":"USD","value_usd":1900},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.14924798,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"5","issue":null,"first_page":"1710926","last_page":"1710926"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11354","display_name":"Evolution and Paleontology Studies","score":0.9358999729156494,"subfield":{"id":"https://openalex.org/subfields/1911","display_name":"Paleontology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11354","display_name":"Evolution and Paleontology Studies","score":0.9358999729156494,"subfield":{"id":"https://openalex.org/subfields/1911","display_name":"Paleontology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10955","display_name":"Paleontology and Evolutionary Biology","score":0.023900000378489494,"subfield":{"id":"https://openalex.org/subfields/1911","display_name":"Paleontology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10109","display_name":"Paleontology and Stratigraphy of Fossils","score":0.012400000356137753,"subfield":{"id":"https://openalex.org/subfields/1911","display_name":"Paleontology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/event","display_name":"Event (particle physics)","score":0.3718999922275543},{"id":"https://openalex.org/keywords/period","display_name":"Period (music)","score":0.3483999967575073},{"id":"https://openalex.org/keywords/diversification","display_name":"Diversification (marketing strategy)","score":0.2865000069141388},{"id":"https://openalex.org/keywords/divergence","display_name":"Divergence (linguistics)","score":0.2736999988555908},{"id":"https://openalex.org/keywords/charisma","display_name":"Charisma","score":0.22750000655651093}],"concepts":[{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.37220001220703125},{"id":"https://openalex.org/C2779662365","wikidata":"https://www.wikidata.org/wiki/Q5416694","display_name":"Event (particle physics)","level":2,"score":0.3718999922275543},{"id":"https://openalex.org/C2781291010","wikidata":"https://www.wikidata.org/wiki/Q178580","display_name":"Period (music)","level":2,"score":0.3483999967575073},{"id":"https://openalex.org/C180916674","wikidata":"https://www.wikidata.org/wiki/Q3711935","display_name":"Diversification (marketing strategy)","level":2,"score":0.2865000069141388},{"id":"https://openalex.org/C207390915","wikidata":"https://www.wikidata.org/wiki/Q1230525","display_name":"Divergence (linguistics)","level":2,"score":0.2736999988555908},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.26030001044273376},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.23749999701976776},{"id":"https://openalex.org/C32772713","wikidata":"https://www.wikidata.org/wiki/Q118157","display_name":"Charisma","level":2,"score":0.22750000655651093},{"id":"https://openalex.org/C29906990","wikidata":"https://www.wikidata.org/wiki/Q1440688","display_name":"Frameshift mutation","level":4,"score":0.22419999539852142},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.21449999511241913}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.3389/fbinf.2025.1710926","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2025.1710926","pdf_url":"https://public-pages-files-2025.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1710926/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:41346778","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41346778","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:b1f5ed7f29a447d6a7d30a7732d2ab7d","is_oa":true,"landing_page_url":"https://doaj.org/article/b1f5ed7f29a447d6a7d30a7732d2ab7d","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Bioinformatics, Vol 5 (2025)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3389/fbinf.2025.1710926","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2025.1710926","pdf_url":"https://public-pages-files-2025.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1710926/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2343554254","display_name":null,"funder_award_id":"GM139540","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7627260611","display_name":"Bridging fields and expanding research opportunities with the timescale of life","funder_award_id":"2318917","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8555797558","display_name":null,"funder_award_id":"GM139540-05","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4416402962.pdf"},"referenced_works_count":57,"referenced_works":["https://openalex.org/W1488281481","https://openalex.org/W1594381616","https://openalex.org/W1656398202","https://openalex.org/W1975414994","https://openalex.org/W1992566665","https://openalex.org/W1992714434","https://openalex.org/W1997939709","https://openalex.org/W2001967468","https://openalex.org/W2002527203","https://openalex.org/W2003447082","https://openalex.org/W2034573754","https://openalex.org/W2044713909","https://openalex.org/W2065775502","https://openalex.org/W2066518030","https://openalex.org/W2090022995","https://openalex.org/W2097412226","https://openalex.org/W2099540110","https://openalex.org/W2101671848","https://openalex.org/W2106767932","https://openalex.org/W2113880039","https://openalex.org/W2115031948","https://openalex.org/W2120398510","https://openalex.org/W2123019209","https://openalex.org/W2127093981","https://openalex.org/W2132522767","https://openalex.org/W2140803428","https://openalex.org/W2146035224","https://openalex.org/W2152855730","https://openalex.org/W2162356213","https://openalex.org/W2171189056","https://openalex.org/W2339640739","https://openalex.org/W2462844236","https://openalex.org/W2473693996","https://openalex.org/W2616725350","https://openalex.org/W2747131829","https://openalex.org/W2892639834","https://openalex.org/W2949972517","https://openalex.org/W3048090444","https://openalex.org/W3119026145","https://openalex.org/W3184052421","https://openalex.org/W3199805689","https://openalex.org/W4220908599","https://openalex.org/W4225691594","https://openalex.org/W4247717935","https://openalex.org/W4251751280","https://openalex.org/W4290075586","https://openalex.org/W4293018133","https://openalex.org/W4367173724","https://openalex.org/W4382241650","https://openalex.org/W4386369531","https://openalex.org/W4387177277","https://openalex.org/W4388253550","https://openalex.org/W4389788119","https://openalex.org/W4402581059","https://openalex.org/W4405456514","https://openalex.org/W4405670661","https://openalex.org/W4409975418"],"related_works":[],"abstract_inverted_index":{"Afrotheria,":[0],"the":[1,18,69,72,81,90,96,116],"superorder":[2],"that":[3,41,108],"includes":[4],"aardvarks,":[5],"elephants,":[6],"elephant":[7],"shrews,":[8],"hyraxes,":[9],"manatees,":[10],"and":[11,21,56],"tenrecs,":[12],"is":[13],"home":[14],"to":[15],"some":[16],"of":[17,35,52,58,71,83,92],"most":[19],"charismatic":[20],"well-studied":[22],"animals":[23],"on":[24,68],"Earth.":[25],"Here,":[26],"we":[27],"assemble":[28],"a":[29,43,112],"nearly":[30],"taxonomically":[31],"complete":[32],"molecular":[33,54],"timetree":[34,65,91],"Afrotheria":[36],"using":[37],"an":[38],"integrative":[39],"approach":[40],"combines":[42],"literature":[44],"search":[45],"for":[46],"published":[47],"timetrees,":[48],"<i>de":[49],"novo</i>":[50],"dating":[51],"untimed":[53],"phylogenies,":[55],"inference":[57],"timetrees":[59],"from":[60],"new":[61],"alignments.":[62],"The":[63,86],"resulting":[64],"sheds":[66],"light":[67],"impact":[70],"Cretaceous-Paleogene":[73],"(K-Pg)":[74],"role":[75],"\u223c66":[76],"million":[77,101],"years":[78],"ago":[79],"in":[80,89],"diversification":[82],"Afrotherian":[84,93],"orders.":[85],"earliest":[87],"divergence":[88],"mammals":[94],"predates":[95],"K-Pg":[97,117],"event":[98],"by":[99,104],"12":[100],"years,":[102],"followed":[103],"five":[105],"interordinal":[106],"divergences":[107],"occurred":[109],"gradually":[110],"over":[111],"16-million-year":[113],"period":[114],"encompassing":[115],"event.":[118]},"counts_by_year":[],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-11-19T00:00:00"}