{"id":"https://openalex.org/W4417041271","doi":"https://doi.org/10.3389/fbinf.2025.1678189","title":"Uncovering human kinase substrates in nipah proteome","display_name":"Uncovering human kinase substrates in nipah proteome","publication_year":2025,"publication_date":"2025-12-05","ids":{"openalex":"https://openalex.org/W4417041271","doi":"https://doi.org/10.3389/fbinf.2025.1678189","pmid":"https://pubmed.ncbi.nlm.nih.gov/41424949"},"language":"en","primary_location":{"id":"doi:10.3389/fbinf.2025.1678189","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2025.1678189","pdf_url":"https://public-pages-files-2025.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1678189/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://public-pages-files-2025.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1678189/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000951098","display_name":"Vineetha Shaji","orcid":"https://orcid.org/0000-0003-0038-5388"},"institutions":[{"id":"https://openalex.org/I158688498","display_name":"Yenepoya University","ror":"https://ror.org/029zfa075","country_code":"IN","type":"education","lineage":["https://openalex.org/I158688498"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Vineetha Shaji","raw_affiliation_strings":["Center for Systems Biology and Molecular Medicine (CSBMM), Yenepoya Research Centre, Yenepoya (Deemed to Be University), Mangalore, India","Centre for Integrative Omics Data Science (CIODS), Yenepoya (Deemed to be University), Mangalore, India"],"affiliations":[{"raw_affiliation_string":"Center for Systems Biology and Molecular Medicine (CSBMM), Yenepoya Research Centre, Yenepoya (Deemed to Be University), Mangalore, India","institution_ids":["https://openalex.org/I158688498"]},{"raw_affiliation_string":"Centre for Integrative Omics Data Science (CIODS), Yenepoya (Deemed to be University), Mangalore, India","institution_ids":["https://openalex.org/I158688498"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5120689746","display_name":"Akash Anil","orcid":null},"institutions":[{"id":"https://openalex.org/I158688498","display_name":"Yenepoya University","ror":"https://ror.org/029zfa075","country_code":"IN","type":"education","lineage":["https://openalex.org/I158688498"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Akash Anil","raw_affiliation_strings":["Centre for Integrative Omics Data Science (CIODS), Yenepoya (Deemed to be University), Mangalore, India"],"affiliations":[{"raw_affiliation_string":"Centre for Integrative Omics Data Science (CIODS), Yenepoya (Deemed to be University), Mangalore, India","institution_ids":["https://openalex.org/I158688498"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111194089","display_name":"Ayisha A. Jabbar","orcid":null},"institutions":[{"id":"https://openalex.org/I158688498","display_name":"Yenepoya University","ror":"https://ror.org/029zfa075","country_code":"IN","type":"education","lineage":["https://openalex.org/I158688498"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Ayisha A. Jabbar","raw_affiliation_strings":["Centre for Integrative Omics Data Science (CIODS), Yenepoya (Deemed to be University), Mangalore, India"],"affiliations":[{"raw_affiliation_string":"Centre for Integrative Omics Data Science (CIODS), Yenepoya (Deemed to be University), Mangalore, India","institution_ids":["https://openalex.org/I158688498"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5093635312","display_name":"Althaf Mahin","orcid":"https://orcid.org/0009-0007-6017-4415"},"institutions":[{"id":"https://openalex.org/I158688498","display_name":"Yenepoya University","ror":"https://ror.org/029zfa075","country_code":"IN","type":"education","lineage":["https://openalex.org/I158688498"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Althaf Mahin","raw_affiliation_strings":["Center for Systems Biology and Molecular Medicine (CSBMM), Yenepoya Research Centre, Yenepoya (Deemed to Be University), Mangalore, India","Centre for Integrative Omics Data Science (CIODS), Yenepoya (Deemed to be University), Mangalore, India"],"affiliations":[{"raw_affiliation_string":"Center for Systems Biology and Molecular Medicine (CSBMM), Yenepoya Research Centre, Yenepoya (Deemed to Be University), Mangalore, India","institution_ids":["https://openalex.org/I158688498"]},{"raw_affiliation_string":"Centre for Integrative Omics Data Science (CIODS), Yenepoya (Deemed to be University), Mangalore, India","institution_ids":["https://openalex.org/I158688498"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101946652","display_name":"Ahmad Rafi","orcid":"https://orcid.org/0009-0001-4240-3516"},"institutions":[{"id":"https://openalex.org/I158688498","display_name":"Yenepoya University","ror":"https://ror.org/029zfa075","country_code":"IN","type":"education","lineage":["https://openalex.org/I158688498"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Ahmad Rafi","raw_affiliation_strings":["Centre for Integrative Omics Data Science (CIODS), Yenepoya (Deemed to be University), Mangalore, India"],"affiliations":[{"raw_affiliation_string":"Centre for Integrative Omics Data Science (CIODS), Yenepoya (Deemed to be University), Mangalore, India","institution_ids":["https://openalex.org/I158688498"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064740102","display_name":"Amjesh Revikumar","orcid":null},"institutions":[{"id":"https://openalex.org/I158688498","display_name":"Yenepoya University","ror":"https://ror.org/029zfa075","country_code":"IN","type":"education","lineage":["https://openalex.org/I158688498"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Amjesh Revikumar","raw_affiliation_strings":["Centre for Integrative Omics Data Science (CIODS), Yenepoya (Deemed to be University), Mangalore, India"],"affiliations":[{"raw_affiliation_string":"Centre for Integrative Omics Data Science (CIODS), Yenepoya (Deemed to be University), Mangalore, India","institution_ids":["https://openalex.org/I158688498"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021768526","display_name":"Sowmya Soman","orcid":"https://orcid.org/0009-0003-1452-2627"},"institutions":[{"id":"https://openalex.org/I158688498","display_name":"Yenepoya University","ror":"https://ror.org/029zfa075","country_code":"IN","type":"education","lineage":["https://openalex.org/I158688498"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Sowmya Soman","raw_affiliation_strings":["Centre for Integrative Omics Data Science (CIODS), Yenepoya (Deemed to be University), Mangalore, India"],"affiliations":[{"raw_affiliation_string":"Centre for Integrative Omics Data Science (CIODS), Yenepoya (Deemed to be University), Mangalore, India","institution_ids":["https://openalex.org/I158688498"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101477791","display_name":"Ganesh Prasad","orcid":"https://orcid.org/0000-0001-6317-3708"},"institutions":[{"id":"https://openalex.org/I158688498","display_name":"Yenepoya University","ror":"https://ror.org/029zfa075","country_code":"IN","type":"education","lineage":["https://openalex.org/I158688498"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Ganesh Prasad","raw_affiliation_strings":["Department of Biochemistry, Yenepoya Medical College, Yenepoya (Deemed to be University), Mangalore, India"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, Yenepoya Medical College, Yenepoya (Deemed to be University), Mangalore, India","institution_ids":["https://openalex.org/I158688498"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063293987","display_name":"Sneha M. Pinto","orcid":"https://orcid.org/0000-0001-8541-8761"},"institutions":[{"id":"https://openalex.org/I28290843","display_name":"University of Surrey","ror":"https://ror.org/00ks66431","country_code":"GB","type":"education","lineage":["https://openalex.org/I28290843"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Sneha M. Pinto","raw_affiliation_strings":["School of Biosciences, Faculty of Health and Medical Sciences, University of Surrey, Guildford, United Kingdom"],"affiliations":[{"raw_affiliation_string":"School of Biosciences, Faculty of Health and Medical Sciences, University of Surrey, Guildford, United Kingdom","institution_ids":["https://openalex.org/I28290843"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077501248","display_name":"Yashwanth Subbannayya","orcid":"https://orcid.org/0000-0002-3885-3514"},"institutions":[{"id":"https://openalex.org/I28290843","display_name":"University of Surrey","ror":"https://ror.org/00ks66431","country_code":"GB","type":"education","lineage":["https://openalex.org/I28290843"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Yashwanth Subbannayya","raw_affiliation_strings":["School of Biosciences, Faculty of Health and Medical Sciences, University of Surrey, Guildford, United Kingdom","Surrey Institute for People- Centred AI, University of Surrey, Guildford, United Kingdom"],"affiliations":[{"raw_affiliation_string":"School of Biosciences, Faculty of Health and Medical Sciences, University of Surrey, Guildford, United Kingdom","institution_ids":["https://openalex.org/I28290843"]},{"raw_affiliation_string":"Surrey Institute for People- Centred AI, University of Surrey, Guildford, United Kingdom","institution_ids":["https://openalex.org/I28290843"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063623000","display_name":"Abhithaj Jayanandan","orcid":"https://orcid.org/0000-0002-6732-4486"},"institutions":[{"id":"https://openalex.org/I158688498","display_name":"Yenepoya University","ror":"https://ror.org/029zfa075","country_code":"IN","type":"education","lineage":["https://openalex.org/I158688498"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Abhithaj Jayanandan","raw_affiliation_strings":["Centre for Integrative Omics Data Science (CIODS), Yenepoya (Deemed to be University), Mangalore, India"],"affiliations":[{"raw_affiliation_string":"Centre for Integrative Omics Data Science (CIODS), Yenepoya (Deemed to be University), Mangalore, India","institution_ids":["https://openalex.org/I158688498"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018605685","display_name":"Rajesh Raju","orcid":"https://orcid.org/0000-0003-2319-121X"},"institutions":[{"id":"https://openalex.org/I158688498","display_name":"Yenepoya University","ror":"https://ror.org/029zfa075","country_code":"IN","type":"education","lineage":["https://openalex.org/I158688498"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Rajesh Raju","raw_affiliation_strings":["Centre for Integrative Omics Data Science (CIODS), Yenepoya (Deemed to be University), Mangalore, India"],"affiliations":[{"raw_affiliation_string":"Centre for Integrative Omics Data Science (CIODS), Yenepoya (Deemed to be University), Mangalore, India","institution_ids":["https://openalex.org/I158688498"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5018605685","https://openalex.org/A5063623000","https://openalex.org/A5101477791"],"corresponding_institution_ids":["https://openalex.org/I158688498"],"apc_list":{"value":1900,"currency":"USD","value_usd":1900},"apc_paid":{"value":1900,"currency":"USD","value_usd":1900},"fwci":1.2096,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.85151787,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":98},"biblio":{"volume":"5","issue":null,"first_page":"1678189","last_page":"1678189"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11135","display_name":"Virology and Viral Diseases","score":0.9916999936103821,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11135","display_name":"Virology and Viral Diseases","score":0.9916999936103821,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11495","display_name":"Animal Virus Infections Studies","score":0.0010999999940395355,"subfield":{"id":"https://openalex.org/subfields/1103","display_name":"Animal Science and Zoology"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.0010999999940395355,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/kinase","display_name":"Kinase","score":0.642300009727478},{"id":"https://openalex.org/keywords/phosphorylation","display_name":"Phosphorylation","score":0.5102999806404114},{"id":"https://openalex.org/keywords/kinome","display_name":"Kinome","score":0.43939998745918274},{"id":"https://openalex.org/keywords/protein-phosphorylation","display_name":"Protein phosphorylation","score":0.39469999074935913},{"id":"https://openalex.org/keywords/map2k7","display_name":"MAP2K7","score":0.3652999997138977},{"id":"https://openalex.org/keywords/autophosphorylation","display_name":"Autophosphorylation","score":0.36169999837875366},{"id":"https://openalex.org/keywords/protein-kinase-r","display_name":"Protein kinase R","score":0.358599990606308},{"id":"https://openalex.org/keywords/phosphoprotein","display_name":"Phosphoprotein","score":0.33959999680519104},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.3203999996185303}],"concepts":[{"id":"https://openalex.org/C184235292","wikidata":"https://www.wikidata.org/wiki/Q421851","display_name":"Kinase","level":2,"score":0.642300009727478},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5949000120162964},{"id":"https://openalex.org/C11960822","wikidata":"https://www.wikidata.org/wiki/Q242736","display_name":"Phosphorylation","level":2,"score":0.5102999806404114},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.4578000009059906},{"id":"https://openalex.org/C54174078","wikidata":"https://www.wikidata.org/wiki/Q3197188","display_name":"Kinome","level":3,"score":0.43939998745918274},{"id":"https://openalex.org/C87325107","wikidata":"https://www.wikidata.org/wiki/Q7251493","display_name":"Protein phosphorylation","level":4,"score":0.39469999074935913},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.38519999384880066},{"id":"https://openalex.org/C159479382","wikidata":"https://www.wikidata.org/wiki/Q18030801","display_name":"MAP2K7","level":5,"score":0.3652999997138977},{"id":"https://openalex.org/C150109051","wikidata":"https://www.wikidata.org/wiki/Q3630494","display_name":"Autophosphorylation","level":4,"score":0.36169999837875366},{"id":"https://openalex.org/C161238802","wikidata":"https://www.wikidata.org/wiki/Q14905690","display_name":"Protein kinase R","level":5,"score":0.358599990606308},{"id":"https://openalex.org/C2777061661","wikidata":"https://www.wikidata.org/wiki/Q423934","display_name":"Phosphoprotein","level":3,"score":0.33959999680519104},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.3203999996185303},{"id":"https://openalex.org/C196347352","wikidata":"https://www.wikidata.org/wiki/Q24771787","display_name":"SH3 domain","level":4,"score":0.31439998745918274},{"id":"https://openalex.org/C97029542","wikidata":"https://www.wikidata.org/wiki/Q281417","display_name":"Protein kinase A","level":3,"score":0.31119999289512634},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.30799999833106995},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.2969000041484833},{"id":"https://openalex.org/C163035849","wikidata":"https://www.wikidata.org/wiki/Q15326910","display_name":"MAPK14","level":5,"score":0.2913999855518341},{"id":"https://openalex.org/C99405784","wikidata":"https://www.wikidata.org/wiki/Q410434","display_name":"c-Raf","level":5,"score":0.28769999742507935},{"id":"https://openalex.org/C90934575","wikidata":"https://www.wikidata.org/wiki/Q6593810","display_name":"Mitogen-activated protein kinase kinase","level":4,"score":0.2842999994754791},{"id":"https://openalex.org/C173990801","wikidata":"https://www.wikidata.org/wiki/Q910492","display_name":"Substrate-level phosphorylation","level":3,"score":0.28029999136924744},{"id":"https://openalex.org/C132149769","wikidata":"https://www.wikidata.org/wiki/Q899651","display_name":"Mitogen-activated protein kinase","level":3,"score":0.27869999408721924},{"id":"https://openalex.org/C42362537","wikidata":"https://www.wikidata.org/wiki/Q87099740","display_name":"Tyrosine kinase","level":3,"score":0.2736999988555908},{"id":"https://openalex.org/C2778375072","wikidata":"https://www.wikidata.org/wiki/Q5909198","display_name":"Host\u2013pathogen interaction","level":4,"score":0.2728999853134155},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.2709999978542328},{"id":"https://openalex.org/C101544691","wikidata":"https://www.wikidata.org/wiki/Q420511","display_name":"Receptor tyrosine kinase","level":3,"score":0.27090001106262207},{"id":"https://openalex.org/C2910050888","wikidata":"https://www.wikidata.org/wiki/Q4857068","display_name":"Protein-Serine-Threonine Kinases","level":4,"score":0.265500009059906},{"id":"https://openalex.org/C94795543","wikidata":"https://www.wikidata.org/wiki/Q3813754","display_name":"Human proteome project","level":4,"score":0.2565999925136566},{"id":"https://openalex.org/C59143045","wikidata":"https://www.wikidata.org/wiki/Q15314942","display_name":"Cyclin-dependent kinase 9","level":5,"score":0.2549000084400177}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3389/fbinf.2025.1678189","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2025.1678189","pdf_url":"https://public-pages-files-2025.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1678189/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:41424949","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41424949","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:de30f6888cf14c4fa6fc9dcd4d5e4001","is_oa":true,"landing_page_url":"https://doaj.org/article/de30f6888cf14c4fa6fc9dcd4d5e4001","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Bioinformatics, Vol 5 (2025)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:12715814","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12715814/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Front Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3389/fbinf.2025.1678189","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2025.1678189","pdf_url":"https://public-pages-files-2025.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1678189/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4417041271.pdf","grobid_xml":"https://content.openalex.org/works/W4417041271.grobid-xml"},"referenced_works_count":75,"referenced_works":["https://openalex.org/W120368132","https://openalex.org/W601813356","https://openalex.org/W1930900885","https://openalex.org/W1965578845","https://openalex.org/W1977693338","https://openalex.org/W1978118805","https://openalex.org/W1990906694","https://openalex.org/W2003829444","https://openalex.org/W2017648800","https://openalex.org/W2021540849","https://openalex.org/W2029667189","https://openalex.org/W2038163496","https://openalex.org/W2046310918","https://openalex.org/W2053538195","https://openalex.org/W2065933509","https://openalex.org/W2091508142","https://openalex.org/W2092819966","https://openalex.org/W2115437883","https://openalex.org/W2115969107","https://openalex.org/W2120896480","https://openalex.org/W2122500867","https://openalex.org/W2127949919","https://openalex.org/W2130479394","https://openalex.org/W2148425212","https://openalex.org/W2151970559","https://openalex.org/W2155518645","https://openalex.org/W2159675211","https://openalex.org/W2163915395","https://openalex.org/W2165253681","https://openalex.org/W2167713445","https://openalex.org/W2168637722","https://openalex.org/W2194722774","https://openalex.org/W2410758979","https://openalex.org/W2519834818","https://openalex.org/W2754901417","https://openalex.org/W2770145603","https://openalex.org/W2812347330","https://openalex.org/W2898324345","https://openalex.org/W2913034192","https://openalex.org/W2942171364","https://openalex.org/W2952073134","https://openalex.org/W2963950918","https://openalex.org/W2977314956","https://openalex.org/W3020125866","https://openalex.org/W3093053585","https://openalex.org/W3093566815","https://openalex.org/W3093811808","https://openalex.org/W3113128237","https://openalex.org/W3121391924","https://openalex.org/W3130783125","https://openalex.org/W3181562710","https://openalex.org/W3195621233","https://openalex.org/W4220979664","https://openalex.org/W4285987594","https://openalex.org/W4311681606","https://openalex.org/W4315642941","https://openalex.org/W4321749620","https://openalex.org/W4327742237","https://openalex.org/W4362676978","https://openalex.org/W4366140552","https://openalex.org/W4375954646","https://openalex.org/W4382786304","https://openalex.org/W4385354517","https://openalex.org/W4389801982","https://openalex.org/W4390877476","https://openalex.org/W4391928409","https://openalex.org/W4396721179","https://openalex.org/W4399871172","https://openalex.org/W4400458746","https://openalex.org/W4401932653","https://openalex.org/W4403191990","https://openalex.org/W4403986521","https://openalex.org/W4405913101","https://openalex.org/W4410304915","https://openalex.org/W4412159256"],"related_works":[],"abstract_inverted_index":{"Nipah":[0],"virus":[1],"(NiV)":[2],"is":[3,37],"a":[4],"zoonotic":[5],"pathogen":[6],"that":[7,101,319,333],"causes":[8],"recurrent":[9],"outbreaks":[10],"with":[11,89,103,196,220,244,251],"considerable":[12],"implications":[13],"for":[14,40],"public":[15],"health.":[16],"Viruses":[17],"engage":[18],"host":[19,28,35,71,131],"kinases":[20,36,77,132,151,165,283,312,349],"to":[21,62,153,199,285],"phosphorylate":[22,200,286],"viral":[23,86,126],"proteins,":[24,105,161,218],"aiding":[25],"replication":[26],"and":[27,33,46,58,69,84,124,128,140,191,233,239,249,278,295,316,353],"disruption.":[29],"Identifying":[30],"NiV":[31,67,82,104,113,160,204,217,236,240,246,252,291,328,337,351],"phosphoproteins":[32],"their":[34,129,221,354],"therefore":[38],"critical":[39],"understanding":[41],"the":[42,122,197,235,245,259,265,281,306,345],"mechanism":[43],"of":[44,79,121,258,267,309,348],"infection":[45,352],"developing":[47],"therapeutics.":[48],"We":[49],"performed":[50],"kinase-substrate":[51,146],"phosphomotif":[52],"analysis":[53,74,108,147],"based":[54],"on":[55,216,290],"prior":[56],"studies":[57],"employed":[59],"computational":[60,207],"tools":[61],"identify":[63],"putative":[64],"phosphosites":[65,110,341],"in":[66,99,115,350],"proteins":[68,83,98,114,338],"corresponding":[70,130,222],"kinases.":[72,225],"Redundancy":[73],"highlighted":[75],"key":[76,163,336],"capable":[78],"phosphorylating":[80],"multiple":[81,201],"high-potential":[85],"substrates.":[87],"Integration":[88],"human-viral":[90],"protein-protein":[91],"interaction":[92],"data":[93],"revealed":[94,229],"human":[95,100,150,164,224,282],"kinase":[96,172,179,183,188,194,273],"substrate":[97],"interact":[102],"while":[106],"conservation":[107],"assessed":[109],"across":[111,158,203,342],"nine":[112,159],"various":[116],"strains.":[117],"The":[118],"functional":[119],"significance":[120,347],"identified":[123,148,211,317],"predicted":[125,152,284],"substrates":[127],"was":[133],"further":[134],"validated":[135,288],"through":[136,299],"<i>in":[137],"silico</i>":[138,227],"docking":[139,228],"molecular":[141],"dynamics":[142],"simulation":[143],"(MD).":[144],"Motif-based":[145],"51":[149],"target":[154],"1180":[155],"phosphorylation":[156,214],"sites":[157,202,215,289],"including":[162],"such":[166],"as":[167,324,356],"Eukaryotic":[168],"elongation":[169],"factor":[170],"2":[171,189,274],"[EEF2K],":[173],"Haploid":[174],"germ":[175],"cell-specific":[176],"nuclear":[177],"protein":[178,182],"[HASPIN],":[180],"Mitogen-activated":[181],"9":[184],"[MAPK9],":[185],"Microtubule-associated":[186],"serine/threonine-protein":[187,272],"[MAST2],":[190],"Spleen":[192],"tyrosine":[193],"[SYK],":[195],"potential":[198,213,308,355],"proteins.":[205,297],"Using":[206],"prediction":[208],"tools,":[209],"we":[210,304],"several":[212],"along":[219],"candidate":[223],"<i>In":[226],"interactions":[230],"between":[231],"EEF2K":[232,279,334],"both":[234],"Fusion":[237,261],"Glycoprotein":[238,262],"Phosphoprotein":[241],"(P),":[242],"MAPK9":[243],"Matrix":[247],"Protein,":[248],"HASPIN":[250],"RNA-dependent":[253],"RNA":[254],"polymerase.":[255],"MD":[256],"simulations":[257],"EEF2K-NiV":[260],"complex":[263],"confirmed":[264],"stability":[266],"this":[268],"interaction.":[269],"Leucine-rich":[270],"repeat":[271],"[LRRK2],":[275],"HASPIN,":[276],"MAST2,":[277],"were":[280],"experimentally":[287],"nucleocapsid":[292],"(N),":[293],"P,":[294],"W":[296],"Furthermore,":[298],"an":[300],"extensive":[301],"literature":[302],"review,":[303],"investigated":[305],"therapeutic":[307,357],"targeting":[310],"these":[311],"using":[313],"known":[314],"inhibitors":[315],"compounds":[318],"could":[320],"potentially":[321],"be":[322],"repurposed":[323],"antiviral":[325],"agents":[326],"against":[327],"infection.":[329],"Our":[330],"findings":[331],"indicate":[332],"phosphorylates":[335],"at":[339],"conserved":[340],"variants,":[343],"underscoring":[344],"pathogenic":[346],"targets.":[358]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-12-05T00:00:00"}
