{"id":"https://openalex.org/W4415363804","doi":"https://doi.org/10.3389/fbinf.2025.1669237","title":"Fish isoallergens and variants: database compilation, in silico allergenicity prediction challenges, and epitope-based threshold optimization","display_name":"Fish isoallergens and variants: database compilation, in silico allergenicity prediction challenges, and epitope-based threshold optimization","publication_year":2025,"publication_date":"2025-10-20","ids":{"openalex":"https://openalex.org/W4415363804","doi":"https://doi.org/10.3389/fbinf.2025.1669237","pmid":"https://pubmed.ncbi.nlm.nih.gov/41189588"},"language":"en","primary_location":{"id":"doi:10.3389/fbinf.2025.1669237","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2025.1669237","pdf_url":null,"source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.3389/fbinf.2025.1669237","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015679620","display_name":"Vachiranee Limviphuvadh","orcid":"https://orcid.org/0000-0001-5344-0585"},"institutions":[{"id":"https://openalex.org/I115228651","display_name":"Agency for Science, Technology and Research","ror":"https://ror.org/036wvzt09","country_code":"SG","type":"government","lineage":["https://openalex.org/I115228651"]}],"countries":["SG"],"is_corresponding":true,"raw_author_name":"Vachiranee Limviphuvadh","raw_affiliation_strings":["Biomolecular Sequence To Function Division (BSFD), Bioinformatics Institute (BII), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomolecular Sequence To Function Division (BSFD), Bioinformatics Institute (BII), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore","institution_ids":["https://openalex.org/I115228651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045252925","display_name":"Thimo Ruethers","orcid":"https://orcid.org/0000-0002-0856-3452"},"institutions":[{"id":"https://openalex.org/I115228651","display_name":"Agency for Science, Technology and Research","ror":"https://ror.org/036wvzt09","country_code":"SG","type":"government","lineage":["https://openalex.org/I115228651"]},{"id":"https://openalex.org/I4210110442","display_name":"James Cook University Singapore","ror":"https://ror.org/01y5z8p89","country_code":"SG","type":"education","lineage":["https://openalex.org/I4210110442"]},{"id":"https://openalex.org/I86467917","display_name":"James Cook University","ror":"https://ror.org/04gsp2c11","country_code":"AU","type":"education","lineage":["https://openalex.org/I86467917"]}],"countries":["AU","SG"],"is_corresponding":false,"raw_author_name":"Thimo Ruethers","raw_affiliation_strings":["Biomolecular Sequence To Function Division (BSFD), Bioinformatics Institute (BII), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore","Centre for Sustainable Tropical Fisheries and Aquaculture, College of Science and Engineering, James Cook University, Townsville, QLD, Australia","Molecular Allergy Research Laboratory, College of Science and Engineering, James Cook University, Townsville, QLD, Australia","Tropical Futures Institute, James Cook University, Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomolecular Sequence To Function Division (BSFD), Bioinformatics Institute (BII), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore","institution_ids":["https://openalex.org/I115228651"]},{"raw_affiliation_string":"Centre for Sustainable Tropical Fisheries and Aquaculture, College of Science and Engineering, James Cook University, Townsville, QLD, Australia","institution_ids":["https://openalex.org/I86467917"]},{"raw_affiliation_string":"Molecular Allergy Research Laboratory, College of Science and Engineering, James Cook University, Townsville, QLD, Australia","institution_ids":["https://openalex.org/I86467917"]},{"raw_affiliation_string":"Tropical Futures Institute, James Cook University, Singapore, Singapore","institution_ids":["https://openalex.org/I4210110442"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101415930","display_name":"Minh N. Nguyen","orcid":"https://orcid.org/0000-0003-4949-2571"},"institutions":[{"id":"https://openalex.org/I115228651","display_name":"Agency for Science, Technology and Research","ror":"https://ror.org/036wvzt09","country_code":"SG","type":"government","lineage":["https://openalex.org/I115228651"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Minh N. Nguyen","raw_affiliation_strings":["Biomolecular Structure To Mechanism Division (BSMD), Bioinformatics Institute (BII), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomolecular Structure To Mechanism Division (BSMD), Bioinformatics Institute (BII), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore","institution_ids":["https://openalex.org/I115228651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006005364","display_name":"Dean R. Jerry","orcid":null},"institutions":[{"id":"https://openalex.org/I4210110442","display_name":"James Cook University Singapore","ror":"https://ror.org/01y5z8p89","country_code":"SG","type":"education","lineage":["https://openalex.org/I4210110442"]},{"id":"https://openalex.org/I86467917","display_name":"James Cook University","ror":"https://ror.org/04gsp2c11","country_code":"AU","type":"education","lineage":["https://openalex.org/I86467917"]}],"countries":["AU","SG"],"is_corresponding":false,"raw_author_name":"Dean R. Jerry","raw_affiliation_strings":["Centre for Sustainable Tropical Fisheries and Aquaculture, College of Science and Engineering, James Cook University, Townsville, QLD, Australia","Tropical Futures Institute, James Cook University, Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Sustainable Tropical Fisheries and Aquaculture, College of Science and Engineering, James Cook University, Townsville, QLD, Australia","institution_ids":["https://openalex.org/I86467917"]},{"raw_affiliation_string":"Tropical Futures Institute, James Cook University, Singapore, Singapore","institution_ids":["https://openalex.org/I4210110442"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080392361","display_name":"Benjamin Smith","orcid":"https://orcid.org/0000-0003-0651-9420"},"institutions":[{"id":"https://openalex.org/I2801261045","display_name":"Monell Chemical Senses Center","ror":"https://ror.org/01mdfdm06","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2801261045"]},{"id":"https://openalex.org/I4210110442","display_name":"James Cook University Singapore","ror":"https://ror.org/01y5z8p89","country_code":"SG","type":"education","lineage":["https://openalex.org/I4210110442"]}],"countries":["SG","US"],"is_corresponding":false,"raw_author_name":"Benjamin P. C. Smith","raw_affiliation_strings":["Monell Chemical Senses Center, Philadelphia, PA, United States","Tropical Futures Institute, James Cook University, Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Monell Chemical Senses Center, Philadelphia, PA, United States","institution_ids":["https://openalex.org/I2801261045"]},{"raw_affiliation_string":"Tropical Futures Institute, James Cook University, Singapore, Singapore","institution_ids":["https://openalex.org/I4210110442"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100661959","display_name":"Yulan Wang","orcid":"https://orcid.org/0000-0002-2831-8737"},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Yulan Wang","raw_affiliation_strings":["Singapore Phenome Center, Lee Kong Chian School of Medicine, Nanyang Technological University, Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Singapore Phenome Center, Lee Kong Chian School of Medicine, Nanyang Technological University, Singapore, Singapore","institution_ids":["https://openalex.org/I172675005"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113601863","display_name":"Yansong Miao","orcid":null},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Yansong Miao","raw_affiliation_strings":["School of Biological Sciences, Nanyang Technological University, Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biological Sciences, Nanyang Technological University, Singapore, Singapore","institution_ids":["https://openalex.org/I172675005"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035499204","display_name":"Anand Kumar Andiappan","orcid":"https://orcid.org/0000-0002-8442-1544"},"institutions":[{"id":"https://openalex.org/I115228651","display_name":"Agency for Science, Technology and Research","ror":"https://ror.org/036wvzt09","country_code":"SG","type":"government","lineage":["https://openalex.org/I115228651"]},{"id":"https://openalex.org/I2800824516","display_name":"Singapore Immunology Network","ror":"https://ror.org/03vmmgg57","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2800824516","https://openalex.org/I2801752549"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Anand Kumar Andiappan","raw_affiliation_strings":["Singapore Immunology Network (SIgN), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Singapore Immunology Network (SIgN), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore","institution_ids":["https://openalex.org/I115228651","https://openalex.org/I2800824516"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079654252","display_name":"Andreas L. Lopata","orcid":"https://orcid.org/0000-0002-2940-9235"},"institutions":[{"id":"https://openalex.org/I115228651","display_name":"Agency for Science, Technology and Research","ror":"https://ror.org/036wvzt09","country_code":"SG","type":"government","lineage":["https://openalex.org/I115228651"]},{"id":"https://openalex.org/I4210110442","display_name":"James Cook University Singapore","ror":"https://ror.org/01y5z8p89","country_code":"SG","type":"education","lineage":["https://openalex.org/I4210110442"]},{"id":"https://openalex.org/I86467917","display_name":"James Cook University","ror":"https://ror.org/04gsp2c11","country_code":"AU","type":"education","lineage":["https://openalex.org/I86467917"]}],"countries":["AU","SG"],"is_corresponding":false,"raw_author_name":"Andreas L. Lopata","raw_affiliation_strings":["Biomolecular Sequence To Function Division (BSFD), Bioinformatics Institute (BII), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore","Centre for Sustainable Tropical Fisheries and Aquaculture, College of Science and Engineering, James Cook University, Townsville, QLD, Australia","Molecular Allergy Research Laboratory, College of Science and Engineering, James Cook University, Townsville, QLD, Australia","Tropical Futures Institute, James Cook University, Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomolecular Sequence To Function Division (BSFD), Bioinformatics Institute (BII), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore","institution_ids":["https://openalex.org/I115228651"]},{"raw_affiliation_string":"Centre for Sustainable Tropical Fisheries and Aquaculture, College of Science and Engineering, James Cook University, Townsville, QLD, Australia","institution_ids":["https://openalex.org/I86467917"]},{"raw_affiliation_string":"Molecular Allergy Research Laboratory, College of Science and Engineering, James Cook University, Townsville, QLD, Australia","institution_ids":["https://openalex.org/I86467917"]},{"raw_affiliation_string":"Tropical Futures Institute, James Cook University, Singapore, Singapore","institution_ids":["https://openalex.org/I4210110442"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5019975803","display_name":"Sebastian Maurer\u2010Stroh","orcid":"https://orcid.org/0000-0003-0813-9640"},"institutions":[{"id":"https://openalex.org/I115228651","display_name":"Agency for Science, Technology and Research","ror":"https://ror.org/036wvzt09","country_code":"SG","type":"government","lineage":["https://openalex.org/I115228651"]},{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":true,"raw_author_name":"Sebastian Maurer-Stroh","raw_affiliation_strings":["Biomolecular Sequence To Function Division (BSFD), Bioinformatics Institute (BII), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore","Yong Loo Lin School of Medicine and Department of Biological Sciences, National University of Singapore (NUS), Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomolecular Sequence To Function Division (BSFD), Bioinformatics Institute (BII), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore","institution_ids":["https://openalex.org/I115228651"]},{"raw_affiliation_string":"Yong Loo Lin School of Medicine and Department of Biological Sciences, National University of Singapore (NUS), Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5015679620","https://openalex.org/A5019975803"],"corresponding_institution_ids":["https://openalex.org/I115228651","https://openalex.org/I165932596"],"apc_list":{"value":2550,"currency":"CHF","value_usd":3077},"apc_paid":{"value":2550,"currency":"CHF","value_usd":3077},"fwci":1.4996,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.82200101,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":98},"biblio":{"volume":"5","issue":null,"first_page":"1669237","last_page":"1669237"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10634","display_name":"Food Allergy and Anaphylaxis Research","score":0.7727000117301941,"subfield":{"id":"https://openalex.org/subfields/2723","display_name":"Immunology and Allergy"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10634","display_name":"Food Allergy and Anaphylaxis Research","score":0.7727000117301941,"subfield":{"id":"https://openalex.org/subfields/2723","display_name":"Immunology and Allergy"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.05079999938607216,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10877","display_name":"Allergic Rhinitis and Sensitization","score":0.025499999523162842,"subfield":{"id":"https://openalex.org/subfields/2723","display_name":"Immunology and Allergy"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/fish-actinopterygii","display_name":"Fish <Actinopterygii>","score":0.7501999735832214},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.7365999817848206},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.4052000045776367},{"id":"https://openalex.org/keywords/epitope","display_name":"Epitope","score":0.3628999888896942},{"id":"https://openalex.org/keywords/threshold-dose","display_name":"Threshold dose","score":0.305400013923645}],"concepts":[{"id":"https://openalex.org/C2909208804","wikidata":"https://www.wikidata.org/wiki/Q127282","display_name":"Fish <Actinopterygii>","level":2,"score":0.7501999735832214},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.7365999817848206},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4950999915599823},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.45419999957084656},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.4052000045776367},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.40149998664855957},{"id":"https://openalex.org/C195616568","wikidata":"https://www.wikidata.org/wiki/Q128711","display_name":"Epitope","level":3,"score":0.3628999888896942},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.31850001215934753},{"id":"https://openalex.org/C3018011569","wikidata":"https://www.wikidata.org/wiki/Q108378037","display_name":"Threshold dose","level":2,"score":0.305400013923645},{"id":"https://openalex.org/C202632270","wikidata":"https://www.wikidata.org/wiki/Q7798106","display_name":"Threshold model","level":2,"score":0.290800005197525},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2892000079154968}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.3389/fbinf.2025.1669237","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2025.1669237","pdf_url":null,"source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:41189588","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41189588","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:researchonline.jcu.edu.au:89296","is_oa":true,"landing_page_url":"https://researchonline.jcu.edu.au/89296/1/89296.pdf","pdf_url":"https://researchonline.jcu.edu.au/89296/1/89296.pdf","source":{"id":"https://openalex.org/S4377196350","display_name":"ResearchOnline - JCU (James Cook University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I86467917","host_organization_name":"James Cook University","host_organization_lineage":["https://openalex.org/I86467917"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:europepmc.org:11389479","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12580176","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:4e093deae1044f0da80b33c5997563f3","is_oa":true,"landing_page_url":"https://doaj.org/article/4e093deae1044f0da80b33c5997563f3","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Bioinformatics, Vol 5 (2025)","raw_type":"article"},{"id":"pmh:oai:dr.ntu.edu.sg:10356/218635","is_oa":false,"landing_page_url":"https://hdl.handle.net/10356/218635","pdf_url":null,"source":{"id":"https://openalex.org/S4306402609","display_name":"DR-NTU (Nanyang Technological University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I172675005","host_organization_name":"Nanyang Technological University","host_organization_lineage":["https://openalex.org/I172675005"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.3389/fbinf.2025.1669237","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2025.1669237","pdf_url":null,"source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G8419390016","display_name":null,"funder_award_id":"W22W3D0003","funder_id":"https://openalex.org/F4320320709","funder_display_name":"National Research Foundation Singapore"}],"funders":[{"id":"https://openalex.org/F4320320671","display_name":"National Research Foundation","ror":"https://ror.org/05s0g1g46"},{"id":"https://openalex.org/F4320320696","display_name":"Agency for Science, Technology and Research","ror":"https://ror.org/036wvzt09"},{"id":"https://openalex.org/F4320320709","display_name":"National Research Foundation Singapore","ror":"https://ror.org/03cpyc314"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":36,"referenced_works":["https://openalex.org/W1992369492","https://openalex.org/W2015176909","https://openalex.org/W2017519756","https://openalex.org/W2089000221","https://openalex.org/W2151932306","https://openalex.org/W2162870908","https://openalex.org/W2281797260","https://openalex.org/W2515293680","https://openalex.org/W2582761630","https://openalex.org/W2751583588","https://openalex.org/W2770254765","https://openalex.org/W2795753611","https://openalex.org/W2799524357","https://openalex.org/W2805788490","https://openalex.org/W2811481580","https://openalex.org/W2900944399","https://openalex.org/W2911882758","https://openalex.org/W2998934530","https://openalex.org/W3020908849","https://openalex.org/W3082473682","https://openalex.org/W3101256226","https://openalex.org/W3158745071","https://openalex.org/W3186310197","https://openalex.org/W3190260127","https://openalex.org/W3207679175","https://openalex.org/W3215004107","https://openalex.org/W4200254489","https://openalex.org/W4282913866","https://openalex.org/W4367154056","https://openalex.org/W4389980269","https://openalex.org/W4394694796","https://openalex.org/W4399546386","https://openalex.org/W4403230065","https://openalex.org/W4403547791","https://openalex.org/W4404697276","https://openalex.org/W4410300669"],"related_works":[],"abstract_inverted_index":{"Introduction":[0],"Fish":[1],"is":[2,24],"a":[3,9],"major":[4,47,123],"food":[5],"allergy":[6,228],"trigger":[7],"with":[8,37,160],"complex":[10],"variety":[11],"of":[12,56,85,95,146,196,208,226,247],"allergenic":[13,190],"protein":[14,185,257],"isoforms":[15],"and":[16,33,53,66,75,88,92,109,116,139,151,234,236,251],"vast":[17],"species":[18,157],"diversity":[19],"exhibiting":[20],"variable":[21],"allergenicity.":[22],"This":[23,222],"the":[25,83,93,122,134,171,214,245],"first":[26],"study":[27,223],"to":[28,183,202,255],"systematically":[29,230],"compile":[30],"fish":[31,86,124,149,156,227,232],"isoallergen":[32,150],"variant":[34,152],"entries":[35,153,162],"associated":[36],"ingestion-related":[38],"allergic":[39],"reactions.":[40],"Methods":[41],"Entries":[42],"were":[43,90,119],"compiled":[44],"from":[45,70,133,154,191],"four":[46,166],"allergen":[48,125],"databases:":[49],"World":[50],"Health":[51],"Organization":[52],"International":[54],"Union":[55],"Immunological":[57],"Societies":[58],"(WHO/IUIS),":[59],"AllergenOnline,":[60],"Comprehensive":[61],"Protein":[62],"Allergen":[63],"Resource":[64],"(COMPARE),":[65],"Allergome,":[67],"including":[68],"evidence":[69],"in":[71,81,99,213,259],"vitro":[72],"IgE-binding":[73],"assays":[74],"complete":[76],"amino":[77],"acid":[78],"sequences.":[79],"Challenges":[80],"predicting":[82],"allergenicity":[84,248],"isoallergens":[87,233],"variants":[89,235],"evaluated,":[91],"sensitivity":[94,173],"five":[96],"widely":[97],"used":[98],"silico":[100],"tools":[101,250],"(AllerCatPro":[102],"2.0,":[103,105],"AlgPred":[104],"pLM4Alg,":[106],"AllergenFP":[107],"v.1.0,":[108],"AllerTop":[110],"v.2.0)":[111],"was":[112,158,178],"assessed.":[113],"Epitope":[114,136],"mapping":[115],"phylogenetic":[117,176],"analyses":[118],"performed":[120],"for":[121,188],"parvalbumin,":[126],"incorporating":[127],"experimentally":[128],"validated":[129],"B-cell":[130,238],"epitope":[131,181,239],"data":[132,182],"Immune":[135],"Database":[137],"(IEDB)":[138],"evolutionary":[140],"relationships.":[141],"Results":[142],"A":[143,175,194],"comprehensive":[144],"dataset":[145],"79":[147],"unique":[148],"34":[155],"identified,":[159],"25":[161],"common":[163],"across":[164],"all":[165],"databases.":[167],"AllerCatPro":[168],"2.0":[169],"achieved":[170],"highest":[172],"(97.5%).":[174],"tree":[177],"constructed,":[179],"integrating":[180,237],"optimize":[184],"family-specific":[186],"thresholds":[187,243],"differentiating":[189],"less/non-allergenic":[192],"parvalbumins.":[193],"threshold":[195],"\u22654":[197],"IEDB-mapped":[198],"epitopes":[199],"allowing":[200],"up":[201],"two":[203],"mismatches":[204],"captured":[205],"52":[206],"out":[207],"54":[209],"parvalbumin":[210,219],"sequences":[211],"(96%)":[212],"dataset,":[215],"effectively":[216],"distinguishing":[217],"between":[218],"classes.":[220],"Discussion":[221],"enhances":[224],"understanding":[225],"by":[229],"compiling":[231],"data.":[240],"The":[241],"optimized":[242],"improve":[244],"performance":[246],"prediction":[249],"can":[252],"be":[253],"applied":[254],"other":[256],"families":[258],"future":[260],"studies.":[261]},"counts_by_year":[{"year":2026,"cited_by_count":2}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-21T00:00:00"}
