{"id":"https://openalex.org/W4414253696","doi":"https://doi.org/10.3389/fbinf.2025.1661601","title":"Drug discovery for chemotherapeutic resistance based on pathway-responsive gene sets and its application in breast cancer","display_name":"Drug discovery for chemotherapeutic resistance based on pathway-responsive gene sets and its application in breast cancer","publication_year":2025,"publication_date":"2025-09-16","ids":{"openalex":"https://openalex.org/W4414253696","doi":"https://doi.org/10.3389/fbinf.2025.1661601","pmid":"https://pubmed.ncbi.nlm.nih.gov/41035952"},"language":"en","primary_location":{"id":"doi:10.3389/fbinf.2025.1661601","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2025.1661601","pdf_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1661601/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1661601/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036476910","display_name":"Dehua Feng","orcid":null},"institutions":[{"id":"https://openalex.org/I79731167","display_name":"Hainan Medical University","ror":"https://ror.org/004eeze55","country_code":"CN","type":"education","lineage":["https://openalex.org/I79731167"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dehua Feng","raw_affiliation_strings":["School of Intelligent Medicine and Technology, Kidney Disease Research Institute, Hainan Engineering Research Center for Health Big Data, Hainan Medical University, Haikou, Hainan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Intelligent Medicine and Technology, Kidney Disease Research Institute, Hainan Engineering Research Center for Health Big Data, Hainan Medical University, Haikou, Hainan, China","institution_ids":["https://openalex.org/I79731167"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079356768","display_name":"Jingwen Hao","orcid":"https://orcid.org/0000-0002-2747-4826"},"institutions":[{"id":"https://openalex.org/I79731167","display_name":"Hainan Medical University","ror":"https://ror.org/004eeze55","country_code":"CN","type":"education","lineage":["https://openalex.org/I79731167"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jingwen Hao","raw_affiliation_strings":["Key Laboratory of Brain Science Research and Transformation in Tropical Environment of Hainan Province, Department of Anatomy, School of Basic Medicine, Hainan Medical University, Haikou, Hainan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Brain Science Research and Transformation in Tropical Environment of Hainan Province, Department of Anatomy, School of Basic Medicine, Hainan Medical University, Haikou, Hainan, China","institution_ids":["https://openalex.org/I79731167"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000152051","display_name":"Lingxu Li","orcid":"https://orcid.org/0000-0003-1436-0069"},"institutions":[{"id":"https://openalex.org/I79731167","display_name":"Hainan Medical University","ror":"https://ror.org/004eeze55","country_code":"CN","type":"education","lineage":["https://openalex.org/I79731167"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lingxu Li","raw_affiliation_strings":["School of Intelligent Medicine and Technology, Kidney Disease Research Institute, Hainan Engineering Research Center for Health Big Data, Hainan Medical University, Haikou, Hainan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Intelligent Medicine and Technology, Kidney Disease Research Institute, Hainan Engineering Research Center for Health Big Data, Hainan Medical University, Haikou, Hainan, China","institution_ids":["https://openalex.org/I79731167"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100727841","display_name":"Jian Chen","orcid":"https://orcid.org/0009-0004-5036-7721"},"institutions":[{"id":"https://openalex.org/I79731167","display_name":"Hainan Medical University","ror":"https://ror.org/004eeze55","country_code":"CN","type":"education","lineage":["https://openalex.org/I79731167"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jian Chen","raw_affiliation_strings":["School of Intelligent Medicine and Technology, Kidney Disease Research Institute, Hainan Engineering Research Center for Health Big Data, Hainan Medical University, Haikou, Hainan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Intelligent Medicine and Technology, Kidney Disease Research Institute, Hainan Engineering Research Center for Health Big Data, Hainan Medical University, Haikou, Hainan, China","institution_ids":["https://openalex.org/I79731167"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100729121","display_name":"Xinying Liu","orcid":"https://orcid.org/0000-0002-9737-0897"},"institutions":[{"id":"https://openalex.org/I79731167","display_name":"Hainan Medical University","ror":"https://ror.org/004eeze55","country_code":"CN","type":"education","lineage":["https://openalex.org/I79731167"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xinying Liu","raw_affiliation_strings":["School of Intelligent Medicine and Technology, Kidney Disease Research Institute, Hainan Engineering Research Center for Health Big Data, Hainan Medical University, Haikou, Hainan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Intelligent Medicine and Technology, Kidney Disease Research Institute, Hainan Engineering Research Center for Health Big Data, Hainan Medical University, Haikou, Hainan, China","institution_ids":["https://openalex.org/I79731167"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101908753","display_name":"Ruijie Zhang","orcid":"https://orcid.org/0000-0002-7293-9653"},"institutions":[{"id":"https://openalex.org/I79731167","display_name":"Hainan Medical University","ror":"https://ror.org/004eeze55","country_code":"CN","type":"education","lineage":["https://openalex.org/I79731167"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ruijie Zhang","raw_affiliation_strings":["School of Intelligent Medicine and Technology, Kidney Disease Research Institute, Hainan Engineering Research Center for Health Big Data, Hainan Medical University, Haikou, Hainan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Intelligent Medicine and Technology, Kidney Disease Research Institute, Hainan Engineering Research Center for Health Big Data, Hainan Medical University, Haikou, Hainan, China","institution_ids":["https://openalex.org/I79731167"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069039041","display_name":"Huirui Han","orcid":"https://orcid.org/0000-0002-6932-3209"},"institutions":[{"id":"https://openalex.org/I79731167","display_name":"Hainan Medical University","ror":"https://ror.org/004eeze55","country_code":"CN","type":"education","lineage":["https://openalex.org/I79731167"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huirui Han","raw_affiliation_strings":["School of Intelligent Medicine and Technology, Kidney Disease Research Institute, Hainan Engineering Research Center for Health Big Data, Hainan Medical University, Haikou, Hainan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Intelligent Medicine and Technology, Kidney Disease Research Institute, Hainan Engineering Research Center for Health Big Data, Hainan Medical University, Haikou, Hainan, China","institution_ids":["https://openalex.org/I79731167"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100460609","display_name":"Tianyi Li","orcid":"https://orcid.org/0000-0002-6556-454X"},"institutions":[{"id":"https://openalex.org/I79731167","display_name":"Hainan Medical University","ror":"https://ror.org/004eeze55","country_code":"CN","type":"education","lineage":["https://openalex.org/I79731167"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tianyi Li","raw_affiliation_strings":["School of Intelligent Medicine and Technology, Kidney Disease Research Institute, Hainan Engineering Research Center for Health Big Data, Hainan Medical University, Haikou, Hainan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Intelligent Medicine and Technology, Kidney Disease Research Institute, Hainan Engineering Research Center for Health Big Data, Hainan Medical University, Haikou, Hainan, China","institution_ids":["https://openalex.org/I79731167"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100451965","display_name":"Xuefeng Wang","orcid":"https://orcid.org/0000-0003-2455-9442"},"institutions":[{"id":"https://openalex.org/I79731167","display_name":"Hainan Medical University","ror":"https://ror.org/004eeze55","country_code":"CN","type":"education","lineage":["https://openalex.org/I79731167"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuefeng Wang","raw_affiliation_strings":["School of Intelligent Medicine and Technology, Kidney Disease Research Institute, Hainan Engineering Research Center for Health Big Data, Hainan Medical University, Haikou, Hainan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Intelligent Medicine and Technology, Kidney Disease Research Institute, Hainan Engineering Research Center for Health Big Data, Hainan Medical University, Haikou, Hainan, China","institution_ids":["https://openalex.org/I79731167"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100626985","display_name":"Xia Li","orcid":"https://orcid.org/0000-0001-7236-0855"},"institutions":[{"id":"https://openalex.org/I79731167","display_name":"Hainan Medical University","ror":"https://ror.org/004eeze55","country_code":"CN","type":"education","lineage":["https://openalex.org/I79731167"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xia Li","raw_affiliation_strings":["School of Intelligent Medicine and Technology, Kidney Disease Research Institute, Hainan Engineering Research Center for Health Big Data, Hainan Medical University, Haikou, Hainan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Intelligent Medicine and Technology, Kidney Disease Research Institute, Hainan Engineering Research Center for Health Big Data, Hainan Medical University, Haikou, Hainan, China","institution_ids":["https://openalex.org/I79731167"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032533576","display_name":"Lei Yu","orcid":"https://orcid.org/0000-0002-7426-2180"},"institutions":[{"id":"https://openalex.org/I79731167","display_name":"Hainan Medical University","ror":"https://ror.org/004eeze55","country_code":"CN","type":"education","lineage":["https://openalex.org/I79731167"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lei Yu","raw_affiliation_strings":["School of Intelligent Medicine and Technology, Kidney Disease Research Institute, Hainan Engineering Research Center for Health Big Data, Hainan Medical University, Haikou, Hainan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Intelligent Medicine and Technology, Kidney Disease Research Institute, Hainan Engineering Research Center for Health Big Data, Hainan Medical University, Haikou, Hainan, China","institution_ids":["https://openalex.org/I79731167"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100339896","display_name":"Bing Li","orcid":"https://orcid.org/0000-0001-6983-7253"},"institutions":[{"id":"https://openalex.org/I79731167","display_name":"Hainan Medical University","ror":"https://ror.org/004eeze55","country_code":"CN","type":"education","lineage":["https://openalex.org/I79731167"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Bing Li","raw_affiliation_strings":["School of Intelligent Medicine and Technology, Kidney Disease Research Institute, Hainan Engineering Research Center for Health Big Data, Hainan Medical University, Haikou, Hainan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Intelligent Medicine and Technology, Kidney Disease Research Institute, Hainan Engineering Research Center for Health Big Data, Hainan Medical University, Haikou, Hainan, China","institution_ids":["https://openalex.org/I79731167"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100364789","display_name":"Jin Li","orcid":"https://orcid.org/0000-0002-3628-7037"},"institutions":[{"id":"https://openalex.org/I79731167","display_name":"Hainan Medical University","ror":"https://ror.org/004eeze55","country_code":"CN","type":"education","lineage":["https://openalex.org/I79731167"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jin Li","raw_affiliation_strings":["School of Intelligent Medicine and Technology, Kidney Disease Research Institute, Hainan Engineering Research Center for Health Big Data, Hainan Medical University, Haikou, Hainan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Intelligent Medicine and Technology, Kidney Disease Research Institute, Hainan Engineering Research Center for Health Big Data, Hainan Medical University, Haikou, Hainan, China","institution_ids":["https://openalex.org/I79731167"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100695804","display_name":"Limei Wang","orcid":"https://orcid.org/0000-0002-5041-2287"},"institutions":[{"id":"https://openalex.org/I79731167","display_name":"Hainan Medical University","ror":"https://ror.org/004eeze55","country_code":"CN","type":"education","lineage":["https://openalex.org/I79731167"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Limei Wang","raw_affiliation_strings":["School of Intelligent Medicine and Technology, Kidney Disease Research Institute, Hainan Engineering Research Center for Health Big Data, Hainan Medical University, Haikou, Hainan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Intelligent Medicine and Technology, Kidney Disease Research Institute, Hainan Engineering Research Center for Health Big Data, Hainan Medical University, Haikou, Hainan, China","institution_ids":["https://openalex.org/I79731167"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5100339896","https://openalex.org/A5100364789","https://openalex.org/A5100695804"],"corresponding_institution_ids":["https://openalex.org/I79731167"],"apc_list":{"value":2125,"currency":"USD","value_usd":2125},"apc_paid":{"value":2125,"currency":"USD","value_usd":2125},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.14966499,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"5","issue":null,"first_page":"1661601","last_page":"1661601"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.6743000149726868,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.6743000149726868,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.049800001084804535,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11533","display_name":"Melanoma and MAPK Pathways","score":0.03269999846816063,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/breast-cancer","display_name":"Breast cancer","score":0.5630999803543091},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.5551999807357788},{"id":"https://openalex.org/keywords/drug-resistance","display_name":"Drug resistance","score":0.4871000051498413},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4869000017642975},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.38269999623298645},{"id":"https://openalex.org/keywords/acquired-resistance","display_name":"Acquired resistance","score":0.3797000050544739}],"concepts":[{"id":"https://openalex.org/C530470458","wikidata":"https://www.wikidata.org/wiki/Q128581","display_name":"Breast cancer","level":3,"score":0.5630999803543091},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.5551999807357788},{"id":"https://openalex.org/C114851261","wikidata":"https://www.wikidata.org/wiki/Q12147416","display_name":"Drug resistance","level":2,"score":0.4871000051498413},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4869000017642975},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.47130000591278076},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4302999973297119},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.38269999623298645},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.38109999895095825},{"id":"https://openalex.org/C2994294914","wikidata":"https://www.wikidata.org/wiki/Q1645075","display_name":"Acquired resistance","level":3,"score":0.3797000050544739},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.37950000166893005},{"id":"https://openalex.org/C502942594","wikidata":"https://www.wikidata.org/wiki/Q3421914","display_name":"Cancer research","level":1,"score":0.3280999958515167},{"id":"https://openalex.org/C163763905","wikidata":"https://www.wikidata.org/wiki/Q17075943","display_name":"Precision medicine","level":2,"score":0.3206000030040741},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.31859999895095825},{"id":"https://openalex.org/C2994423619","wikidata":"https://www.wikidata.org/wiki/Q9103","display_name":"Human breast","level":4,"score":0.2935999929904938},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.29190000891685486},{"id":"https://openalex.org/C3019816032","wikidata":"https://www.wikidata.org/wiki/Q2575340","display_name":"Cancer treatment","level":3,"score":0.28029999136924744},{"id":"https://openalex.org/C64903051","wikidata":"https://www.wikidata.org/wiki/Q2198549","display_name":"Drug development","level":3,"score":0.2624000012874603}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.3389/fbinf.2025.1661601","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2025.1661601","pdf_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1661601/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:41035952","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41035952","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:0ebfc4739ff54600816be8e079049d3b","is_oa":true,"landing_page_url":"https://doaj.org/article/0ebfc4739ff54600816be8e079049d3b","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Bioinformatics, Vol 5 (2025)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:11290758","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12479470","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:12479470","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12479470/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Front Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3389/fbinf.2025.1661601","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2025.1661601","pdf_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1661601/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4414253696.pdf"},"referenced_works_count":61,"referenced_works":["https://openalex.org/W1565310327","https://openalex.org/W1978698026","https://openalex.org/W2007627561","https://openalex.org/W2022397091","https://openalex.org/W2036039209","https://openalex.org/W2050667900","https://openalex.org/W2104906182","https://openalex.org/W2108068107","https://openalex.org/W2110471949","https://openalex.org/W2114063979","https://openalex.org/W2134063138","https://openalex.org/W2137891761","https://openalex.org/W2158448328","https://openalex.org/W2159707944","https://openalex.org/W2171758194","https://openalex.org/W2403224960","https://openalex.org/W2421787307","https://openalex.org/W2531115813","https://openalex.org/W2592643813","https://openalex.org/W2623140174","https://openalex.org/W2737540953","https://openalex.org/W2762865482","https://openalex.org/W2797928920","https://openalex.org/W2801489084","https://openalex.org/W2898492815","https://openalex.org/W2916643775","https://openalex.org/W2948035094","https://openalex.org/W2949471597","https://openalex.org/W2997398159","https://openalex.org/W3004413626","https://openalex.org/W3016973731","https://openalex.org/W3036385588","https://openalex.org/W3094190349","https://openalex.org/W3098913413","https://openalex.org/W3121345014","https://openalex.org/W3137882913","https://openalex.org/W3138840859","https://openalex.org/W3159541852","https://openalex.org/W3204025209","https://openalex.org/W3204077809","https://openalex.org/W3210402247","https://openalex.org/W4200108601","https://openalex.org/W4205995232","https://openalex.org/W4214945114","https://openalex.org/W4281397760","https://openalex.org/W4283009562","https://openalex.org/W4290973443","https://openalex.org/W4293773580","https://openalex.org/W4294216483","https://openalex.org/W4294583800","https://openalex.org/W4304943317","https://openalex.org/W4316363029","https://openalex.org/W4362577938","https://openalex.org/W4386889839","https://openalex.org/W4388563724","https://openalex.org/W4390116582","https://openalex.org/W4390905329","https://openalex.org/W4391800037","https://openalex.org/W4391945713","https://openalex.org/W4392127821","https://openalex.org/W4408045533"],"related_works":[],"abstract_inverted_index":{"Introduction":[0],"Chemotherapy":[1],"response":[2],"variability":[3],"in":[4,141,156],"cancer":[5],"patients":[6],"necessitates":[7],"novel":[8],"strategies":[9,65],"targeting":[10,131],"chemoresistant":[11],"populations.":[12],"While":[13],"combinatorial":[14],"regimens":[15],"show":[16],"promise":[17],"through":[18,192],"synergistic":[19,151],"pharmacological":[20],"interactions,":[21],"traditional":[22],"pathway":[23,87,115,194],"enrichment":[24],"methods":[25],"relying":[26],"on":[27],"static":[28],"gene":[29],"sets":[30],"fail":[31],"to":[32,51,120,184],"capture":[33],"drug-induced":[34,86],"dynamic":[35,193],"transcriptional":[36],"perturbations.":[37],"Methods":[38],"To":[39],"address":[40],"this":[41],"challenge,":[42],"we":[43],"developed":[44],"the":[45,76,121,147,160],"Pathway-Responsive":[46],"Gene":[47,100],"Sets":[48,101],"(PRGS)":[49],"framework":[50,173],"systematically":[52],"identify":[53],"chemoresistance-associated":[54],"pathways":[55,133],"and":[56,110,188],"guide":[57,189],"therapeutic":[58,164,190],"intervention.":[59],"Comparative":[60],"evaluation":[61],"of":[62,85,113,118,129,162],"three":[63],"computational":[64],"(GSEA-like":[66],"method,":[67,70],"Hypergeometric":[68],"test-based":[69,72],"Bates":[71],"method)":[73],"revealed":[74],"that":[75,146,174],"GSEA-like":[77],"methodology":[78],"exhibited":[79,150],"superior":[80],"performance,":[81],"enabling":[82],"precise":[83],"identification":[84],"dysregulation.":[88,116],"Results":[89],"Key":[90],"experimental":[91],"findings":[92],"demonstrated":[93,145],"PRGS\u2019s":[94],"superiority":[95],"over":[96],"conventional":[97],"Pathway":[98],"Member":[99],"(PMGS),":[102],"exhibiting":[103],"statistical":[104],"independence":[105],"(":[106],"p":[107],"&amp;lt;":[108],"0.0001)":[109],"enhanced":[111],"detection":[112],"chemotherapy-driven":[114],"Application":[117],"PRGS":[119],"GDSC":[122],"dataset":[123],"identified":[124],"8":[125],"resistance-associated":[126],"pathways.":[127],"Screening":[128],"agents":[130],"these":[132],"yielded":[134],"candidates":[135],"with":[136,178],"predicted":[137],"anti-resistance":[138],"activity.":[139],"An":[140],"vitro":[142],"cellular":[143],"experiment":[144],"bortezomib-bleomycin":[148],"combination":[149],"cytotoxicity":[152],"(IDAcomboScore":[153],"=":[154],"0.014)":[155],"T47D":[157],"cells,":[158],"highlighting":[159],"potential":[161],"PRGS-guided":[163],"strategies.":[165],"Discussion":[166],"This":[167],"study":[168],"establishes":[169],"a":[170],"PRGS-based":[171],"methodological":[172],"integrates":[175],"genomic":[176],"perturbations":[177],"precision":[179],"oncology,":[180],"demonstrating":[181],"its":[182],"capacity":[183],"decode":[185],"resistance":[186],"mechanisms":[187],"development":[191],"analysis.":[195]},"counts_by_year":[],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
