{"id":"https://openalex.org/W4413707276","doi":"https://doi.org/10.3389/fbinf.2025.1613985","title":"Identifying novel therapeutic targets for non-alcoholic fatty liver disease using bioinformatics approaches: from drug repositioning to traditional Chinese medicine","display_name":"Identifying novel therapeutic targets for non-alcoholic fatty liver disease using bioinformatics approaches: from drug repositioning to traditional Chinese medicine","publication_year":2025,"publication_date":"2025-08-26","ids":{"openalex":"https://openalex.org/W4413707276","doi":"https://doi.org/10.3389/fbinf.2025.1613985","pmid":"https://pubmed.ncbi.nlm.nih.gov/40932836"},"language":"en","primary_location":{"id":"doi:10.3389/fbinf.2025.1613985","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2025.1613985","pdf_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1613985/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1613985/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101791661","display_name":"Jingmin Zhang","orcid":"https://orcid.org/0000-0002-2765-6574"},"institutions":[{"id":"https://openalex.org/I17721919","display_name":"Shanxi Medical University","ror":"https://ror.org/0265d1010","country_code":"CN","type":"education","lineage":["https://openalex.org/I17721919"]},{"id":"https://openalex.org/I4210158804","display_name":"Shanxi Academy of Medical Sciences","ror":"https://ror.org/04tshhm50","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210158804"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jingmin Zhang","raw_affiliation_strings":["Shanxi Bethune Hospital, Shanxi Academy of Medical Sciences, Third Hospital of Shanxi Medical University, Tongji Shanxi Hospital, Taiyuan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shanxi Bethune Hospital, Shanxi Academy of Medical Sciences, Third Hospital of Shanxi Medical University, Tongji Shanxi Hospital, Taiyuan, China","institution_ids":["https://openalex.org/I4210158804","https://openalex.org/I17721919"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007633553","display_name":"Tianwei Meng","orcid":"https://orcid.org/0000-0001-8311-6903"},"institutions":[{"id":"https://openalex.org/I192327786","display_name":"Heilongjiang University of Chinese Medicine","ror":"https://ror.org/05x1ptx12","country_code":"CN","type":"education","lineage":["https://openalex.org/I192327786"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tianwei Meng","raw_affiliation_strings":["Heilongjiang University of Chinese Medicine, Harbin, Heilongjiang, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Heilongjiang University of Chinese Medicine, Harbin, Heilongjiang, China","institution_ids":["https://openalex.org/I192327786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103171448","display_name":"Weiqi Gao","orcid":"https://orcid.org/0000-0003-0154-9524"},"institutions":[{"id":"https://openalex.org/I17721919","display_name":"Shanxi Medical University","ror":"https://ror.org/0265d1010","country_code":"CN","type":"education","lineage":["https://openalex.org/I17721919"]},{"id":"https://openalex.org/I4210158804","display_name":"Shanxi Academy of Medical Sciences","ror":"https://ror.org/04tshhm50","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210158804"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Weiqi Gao","raw_affiliation_strings":["Shanxi Bethune Hospital, Shanxi Academy of Medical Sciences, Third Hospital of Shanxi Medical University, Tongji Shanxi Hospital, Taiyuan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shanxi Bethune Hospital, Shanxi Academy of Medical Sciences, Third Hospital of Shanxi Medical University, Tongji Shanxi Hospital, Taiyuan, China","institution_ids":["https://openalex.org/I4210158804","https://openalex.org/I17721919"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060691933","display_name":"Xinghua Li","orcid":"https://orcid.org/0000-0002-2971-159X"},"institutions":[{"id":"https://openalex.org/I115067436","display_name":"Changzhi University","ror":"https://ror.org/04svmxd14","country_code":"CN","type":"education","lineage":["https://openalex.org/I115067436"]},{"id":"https://openalex.org/I198959115","display_name":"Changzhi Medical College","ror":"https://ror.org/0340wst14","country_code":"CN","type":"education","lineage":["https://openalex.org/I198959115"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xinghua Li","raw_affiliation_strings":["Department of Pharmacy, Changzhi People's Hospital, Changzhi, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmacy, Changzhi People's Hospital, Changzhi, China","institution_ids":["https://openalex.org/I198959115","https://openalex.org/I115067436"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076495142","display_name":"Juan Xu","orcid":"https://orcid.org/0000-0002-3709-4165"},"institutions":[{"id":"https://openalex.org/I17721919","display_name":"Shanxi Medical University","ror":"https://ror.org/0265d1010","country_code":"CN","type":"education","lineage":["https://openalex.org/I17721919"]},{"id":"https://openalex.org/I4210158804","display_name":"Shanxi Academy of Medical Sciences","ror":"https://ror.org/04tshhm50","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210158804"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Juan Xu","raw_affiliation_strings":["Shanxi Bethune Hospital, Shanxi Academy of Medical Sciences, Third Hospital of Shanxi Medical University, Tongji Shanxi Hospital, Taiyuan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shanxi Bethune Hospital, Shanxi Academy of Medical Sciences, Third Hospital of Shanxi Medical University, Tongji Shanxi Hospital, Taiyuan, China","institution_ids":["https://openalex.org/I4210158804","https://openalex.org/I17721919"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5076495142"],"corresponding_institution_ids":["https://openalex.org/I17721919","https://openalex.org/I4210158804"],"apc_list":{"value":1900,"currency":"USD","value_usd":1900},"apc_paid":{"value":1900,"currency":"USD","value_usd":1900},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.27525327,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"5","issue":null,"first_page":"1613985","last_page":"1613985"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10351","display_name":"Liver Disease Diagnosis and Treatment","score":0.4894999861717224,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10351","display_name":"Liver Disease Diagnosis and Treatment","score":0.4894999861717224,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12059","display_name":"Berberine and alkaloids research","score":0.15919999778270721,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12647","display_name":"Traditional Chinese Medicine Studies","score":0.06419999897480011,"subfield":{"id":"https://openalex.org/subfields/2707","display_name":"Complementary and alternative medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/fatty-liver","display_name":"Fatty liver","score":0.7303413152694702},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.6058964729309082},{"id":"https://openalex.org/keywords/alcoholic-liver-disease","display_name":"Alcoholic liver disease","score":0.5051067471504211},{"id":"https://openalex.org/keywords/traditional-chinese-medicine","display_name":"Traditional Chinese medicine","score":0.485761433839798},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.48517805337905884},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.4546830654144287},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3758261501789093},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.37483203411102295},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.33344578742980957},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23644649982452393},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.18979030847549438},{"id":"https://openalex.org/keywords/alternative-medicine","display_name":"Alternative medicine","score":0.15812218189239502},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.12093803286552429},{"id":"https://openalex.org/keywords/cirrhosis","display_name":"Cirrhosis","score":0.10951739549636841}],"concepts":[{"id":"https://openalex.org/C2778772119","wikidata":"https://www.wikidata.org/wiki/Q6058862","display_name":"Fatty liver","level":3,"score":0.7303413152694702},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.6058964729309082},{"id":"https://openalex.org/C2777575235","wikidata":"https://www.wikidata.org/wiki/Q558404","display_name":"Alcoholic liver disease","level":3,"score":0.5051067471504211},{"id":"https://openalex.org/C188947578","wikidata":"https://www.wikidata.org/wiki/Q200253","display_name":"Traditional Chinese medicine","level":3,"score":0.485761433839798},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.48517805337905884},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.4546830654144287},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3758261501789093},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37483203411102295},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.33344578742980957},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23644649982452393},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.18979030847549438},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.15812218189239502},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.12093803286552429},{"id":"https://openalex.org/C2777214474","wikidata":"https://www.wikidata.org/wiki/Q147778","display_name":"Cirrhosis","level":2,"score":0.10951739549636841}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3389/fbinf.2025.1613985","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2025.1613985","pdf_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1613985/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40932836","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40932836","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:0cd05a9b21cf4be4835fc881f6f90c72","is_oa":true,"landing_page_url":"https://doaj.org/article/0cd05a9b21cf4be4835fc881f6f90c72","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Bioinformatics, Vol 5 (2025)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:12417881","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12417881/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Front Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3389/fbinf.2025.1613985","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2025.1613985","pdf_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1613985/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4413707276.pdf"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W1767614014","https://openalex.org/W2019276374","https://openalex.org/W2019707847","https://openalex.org/W2105924489","https://openalex.org/W2147372056","https://openalex.org/W2159675211","https://openalex.org/W2317962661","https://openalex.org/W2615404805","https://openalex.org/W2791300176","https://openalex.org/W2890019233","https://openalex.org/W2899510680","https://openalex.org/W2909449730","https://openalex.org/W2969845879","https://openalex.org/W3035742874","https://openalex.org/W3106104677","https://openalex.org/W3108860514","https://openalex.org/W3164418011","https://openalex.org/W4206572026","https://openalex.org/W4214675831","https://openalex.org/W4283804489","https://openalex.org/W4288735696","https://openalex.org/W4294719209","https://openalex.org/W4309665367","https://openalex.org/W4315619045","https://openalex.org/W4317804524","https://openalex.org/W4321609378","https://openalex.org/W4362557485","https://openalex.org/W4362719751","https://openalex.org/W4388454971","https://openalex.org/W4388615780","https://openalex.org/W4393246047","https://openalex.org/W4393257252","https://openalex.org/W4394961303","https://openalex.org/W4400589645","https://openalex.org/W4403152060","https://openalex.org/W4406101515","https://openalex.org/W4406469881"],"related_works":["https://openalex.org/W4234327826","https://openalex.org/W2329852040","https://openalex.org/W3207691180","https://openalex.org/W2339385642","https://openalex.org/W2412837066","https://openalex.org/W2358743627","https://openalex.org/W2090672130","https://openalex.org/W2527763745","https://openalex.org/W3132255551","https://openalex.org/W4303648544"],"abstract_inverted_index":{"Background:":[0],"Non-alcoholic":[1],"fatty":[2],"liver":[3],"disease":[4],"(NAFLD)":[5],"is":[6],"a":[7,20,137],"prevalent":[8],"condition":[9],"with":[10,82,106,124],"limited":[11],"effective":[12],"treatments,":[13],"necessitating":[14],"novel":[15,40],"therapeutic":[16,41,172],"strategies.":[17],"Bioinformatics":[18],"offers":[19],"promising":[21,160],"approach":[22],"to":[23,38,68,110,151,169],"identify":[24,39,69],"new":[25],"targets":[26,42],"by":[27],"analyzing":[28],"gene":[29,60],"expression":[30,61],"and":[31,51,80,89,130,156],"drug":[32,49],"interactions.":[33],"Objective:":[34],"This":[35],"study":[36],"aims":[37],"for":[43,162],"NAFLD":[44,152,163],"through":[45],"bioinformatics,":[46],"focusing":[47],"on":[48],"repositioning":[50],"traditional":[52],"Chinese":[53],"medicine":[54],"(TCM)":[55],"components.":[56],"Methods:":[57],"Three":[58],"NAFLD-related":[59],"datasets":[62],"(GSE260666,":[63],"GSE126848,":[64],"GSE135251)":[65],"were":[66,76,92,100,122],"analyzed":[67],"differentially":[70],"expressed":[71],"genes.":[72],"Protein-protein":[73],"interaction":[74],"networks":[75],"constructed":[77],"using":[78,94],"STRING":[79],"visualized":[81],"Cytoscape.":[83],"Pathway":[84],"enrichment":[85,126],"analysis":[86],"was":[87],"performed,":[88],"drug-gene":[90],"interactions":[91],"explored":[93],"the":[95,103],"DGIdb":[96],"database.":[97],"TCM":[98,142,157],"components":[99,143],"screened":[101],"via":[102],"HERB":[104],"database,":[105],"molecular":[107],"docking":[108],"conducted":[109],"assess":[111],"binding":[112,149],"affinities.":[113],"Results:":[114],"Key":[115],"hub":[116],"genes":[117],"(CXCL2,":[118],"CDKN1A,":[119],"TNFRSF12A,":[120],"HGFAC)":[121],"identified,":[123],"significant":[125],"in":[127],"cell":[128],"proliferation":[129],"PI3K-Akt":[131],"signaling":[132],"pathways.":[133],"Cyclosporine":[134,155],"emerged":[135],"as":[136],"potential":[138],"repurposed":[139],"drug,":[140],"while":[141],"(curcumin,":[144],"resveratrol,":[145],"berberine)":[146],"showed":[147],"strong":[148],"affinities":[150],"targets.":[153],"Conclusion:":[154],"compounds":[158],"are":[159],"candidates":[161],"treatment,":[164],"warranting":[165],"further":[166],"experimental":[167],"validation":[168],"confirm":[170],"their":[171],"potential.":[173]},"counts_by_year":[],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
