{"id":"https://openalex.org/W4411661292","doi":"https://doi.org/10.3389/fbinf.2025.1606284","title":"Integrated single-cell and bulk RNA dequencing to identify and validate prognostic genes related to T Cell senescence in acute myeloid leukemia","display_name":"Integrated single-cell and bulk RNA dequencing to identify and validate prognostic genes related to T Cell senescence in acute myeloid leukemia","publication_year":2025,"publication_date":"2025-06-25","ids":{"openalex":"https://openalex.org/W4411661292","doi":"https://doi.org/10.3389/fbinf.2025.1606284","pmid":"https://pubmed.ncbi.nlm.nih.gov/40635996"},"language":"en","primary_location":{"id":"doi:10.3389/fbinf.2025.1606284","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2025.1606284","pdf_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1606284/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1606284/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102515271","display_name":"Mengyao Sha","orcid":null},"institutions":[{"id":"https://openalex.org/I4210109751","display_name":"Suzhou Guangji Hospital","ror":"https://ror.org/01erc2q10","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210109751"]},{"id":"https://openalex.org/I4210134467","display_name":"Suzhou Traditional Chinese Medicine Hospital","ror":"https://ror.org/03hy9zy10","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210134467"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mengyao Sha","raw_affiliation_strings":["Department of Laboratory Medicine, Suzhou Yongding Hospital, Suzhou, China"],"affiliations":[{"raw_affiliation_string":"Department of Laboratory Medicine, Suzhou Yongding Hospital, Suzhou, China","institution_ids":["https://openalex.org/I4210109751","https://openalex.org/I4210134467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100450257","display_name":"Jun Chen","orcid":"https://orcid.org/0000-0003-2447-0544"},"institutions":[{"id":"https://openalex.org/I4392738224","display_name":"Suzhou Yongding Hospital","ror":"https://ror.org/00mmpjq16","country_code":null,"type":"healthcare","lineage":["https://openalex.org/I4392738224"]},{"id":"https://openalex.org/I4210109751","display_name":"Suzhou Guangji Hospital","ror":"https://ror.org/01erc2q10","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210109751"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jun Chen","raw_affiliation_strings":["Department of Hematology, Suzhou Yongding Hospital, Suzhou, China"],"affiliations":[{"raw_affiliation_string":"Department of Hematology, Suzhou Yongding Hospital, Suzhou, China","institution_ids":["https://openalex.org/I4210109751","https://openalex.org/I4392738224"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090528336","display_name":"Haifeng Hou","orcid":"https://orcid.org/0000-0002-1131-1619"},"institutions":[{"id":"https://openalex.org/I4210109751","display_name":"Suzhou Guangji Hospital","ror":"https://ror.org/01erc2q10","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210109751"]},{"id":"https://openalex.org/I4210134467","display_name":"Suzhou Traditional Chinese Medicine Hospital","ror":"https://ror.org/03hy9zy10","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210134467"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haifeng Hou","raw_affiliation_strings":["Department of Laboratory Medicine, Suzhou Yongding Hospital, Suzhou, China"],"affiliations":[{"raw_affiliation_string":"Department of Laboratory Medicine, Suzhou Yongding Hospital, Suzhou, China","institution_ids":["https://openalex.org/I4210109751","https://openalex.org/I4210134467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108296195","display_name":"Hang Dou","orcid":null},"institutions":[{"id":"https://openalex.org/I4210134467","display_name":"Suzhou Traditional Chinese Medicine Hospital","ror":"https://ror.org/03hy9zy10","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210134467"]},{"id":"https://openalex.org/I4210109751","display_name":"Suzhou Guangji Hospital","ror":"https://ror.org/01erc2q10","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210109751"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huaihui Dou","raw_affiliation_strings":["Department of Laboratory Medicine, Suzhou Yongding Hospital, Suzhou, China"],"affiliations":[{"raw_affiliation_string":"Department of Laboratory Medicine, Suzhou Yongding Hospital, Suzhou, China","institution_ids":["https://openalex.org/I4210109751","https://openalex.org/I4210134467"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100456362","display_name":"Yan Zhang","orcid":"https://orcid.org/0000-0003-0472-3399"},"institutions":[{"id":"https://openalex.org/I4210134467","display_name":"Suzhou Traditional Chinese Medicine Hospital","ror":"https://ror.org/03hy9zy10","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210134467"]},{"id":"https://openalex.org/I4210109751","display_name":"Suzhou Guangji Hospital","ror":"https://ror.org/01erc2q10","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210109751"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yan Zhang","raw_affiliation_strings":["Department of Laboratory Medicine, Suzhou Yongding Hospital, Suzhou, China"],"affiliations":[{"raw_affiliation_string":"Department of Laboratory Medicine, Suzhou Yongding Hospital, Suzhou, China","institution_ids":["https://openalex.org/I4210109751","https://openalex.org/I4210134467"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5100456362"],"corresponding_institution_ids":["https://openalex.org/I4210109751","https://openalex.org/I4210134467"],"apc_list":{"value":1900,"currency":"USD","value_usd":1900},"apc_paid":{"value":1900,"currency":"USD","value_usd":1900},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.18175165,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"5","issue":null,"first_page":"1606284","last_page":"1606284"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10309","display_name":"Acute Myeloid Leukemia Research","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/2720","display_name":"Hematology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10309","display_name":"Acute Myeloid Leukemia Research","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/2720","display_name":"Hematology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11313","display_name":"Immune cells in cancer","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/senescence","display_name":"Senescence","score":0.7836971282958984},{"id":"https://openalex.org/keywords/myeloid-leukemia","display_name":"Myeloid leukemia","score":0.7676934003829956},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6202579736709595},{"id":"https://openalex.org/keywords/cell","display_name":"Cell","score":0.5029146075248718},{"id":"https://openalex.org/keywords/leukemia","display_name":"Leukemia","score":0.4823295772075653},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.46878302097320557},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.4580047130584717},{"id":"https://openalex.org/keywords/cancer-research","display_name":"Cancer research","score":0.4313378632068634},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3647453188896179},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2684789299964905}],"concepts":[{"id":"https://openalex.org/C522857546","wikidata":"https://www.wikidata.org/wiki/Q2070979","display_name":"Senescence","level":2,"score":0.7836971282958984},{"id":"https://openalex.org/C2778729363","wikidata":"https://www.wikidata.org/wiki/Q11688946","display_name":"Myeloid leukemia","level":2,"score":0.7676934003829956},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6202579736709595},{"id":"https://openalex.org/C1491633281","wikidata":"https://www.wikidata.org/wiki/Q7868","display_name":"Cell","level":2,"score":0.5029146075248718},{"id":"https://openalex.org/C2778461978","wikidata":"https://www.wikidata.org/wiki/Q29496","display_name":"Leukemia","level":2,"score":0.4823295772075653},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.46878302097320557},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.4580047130584717},{"id":"https://openalex.org/C502942594","wikidata":"https://www.wikidata.org/wiki/Q3421914","display_name":"Cancer research","level":1,"score":0.4313378632068634},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3647453188896179},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2684789299964905}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3389/fbinf.2025.1606284","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2025.1606284","pdf_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1606284/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40635996","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40635996","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:d7b348b8fcfa4907b443c3ebc6d0a9aa","is_oa":true,"landing_page_url":"https://doaj.org/article/d7b348b8fcfa4907b443c3ebc6d0a9aa","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Bioinformatics, Vol 5 (2025)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:12238043","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12238043","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Front Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3389/fbinf.2025.1606284","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2025.1606284","pdf_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1606284/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4411661292.pdf"},"referenced_works_count":60,"referenced_works":["https://openalex.org/W1605195795","https://openalex.org/W1972898510","https://openalex.org/W2035618305","https://openalex.org/W2050345155","https://openalex.org/W2075294566","https://openalex.org/W2096086497","https://openalex.org/W2110014529","https://openalex.org/W2123664981","https://openalex.org/W2125789330","https://openalex.org/W2146512944","https://openalex.org/W2159707944","https://openalex.org/W2328701990","https://openalex.org/W2743925332","https://openalex.org/W2768067593","https://openalex.org/W2907514116","https://openalex.org/W2949273159","https://openalex.org/W2958014316","https://openalex.org/W2958663663","https://openalex.org/W2975349219","https://openalex.org/W2980897730","https://openalex.org/W2995231009","https://openalex.org/W3014312696","https://openalex.org/W3014402470","https://openalex.org/W3017752014","https://openalex.org/W3024582588","https://openalex.org/W3035819174","https://openalex.org/W3045395564","https://openalex.org/W3094220664","https://openalex.org/W3118296868","https://openalex.org/W3121021979","https://openalex.org/W3151566612","https://openalex.org/W3200750802","https://openalex.org/W3208832662","https://openalex.org/W3209608268","https://openalex.org/W4200199612","https://openalex.org/W4200265806","https://openalex.org/W4206839115","https://openalex.org/W4213091566","https://openalex.org/W4283264931","https://openalex.org/W4283511977","https://openalex.org/W4308060181","https://openalex.org/W4312174611","https://openalex.org/W4362657266","https://openalex.org/W4365504600","https://openalex.org/W4379375317","https://openalex.org/W4383619246","https://openalex.org/W4387141454","https://openalex.org/W4387836827","https://openalex.org/W4389566239","https://openalex.org/W4390946817","https://openalex.org/W4392057927","https://openalex.org/W4393948081","https://openalex.org/W4398196658","https://openalex.org/W4399808801","https://openalex.org/W4400587305","https://openalex.org/W4400723635","https://openalex.org/W4401929248","https://openalex.org/W4402642811","https://openalex.org/W4406731670","https://openalex.org/W4408472305"],"related_works":["https://openalex.org/W2791511901","https://openalex.org/W2059729414","https://openalex.org/W2935649237","https://openalex.org/W2082627181","https://openalex.org/W2339852853","https://openalex.org/W2162414118","https://openalex.org/W2394369094","https://openalex.org/W2913433203","https://openalex.org/W2990397977","https://openalex.org/W2364732766"],"abstract_inverted_index":{"CALR,":[0],"CDK6,":[1],"HOXA9,":[2],"and":[3,8,19,33],"PARP1":[4],"predicted":[5],"disease":[6],"progression":[7],"prognosis":[9,32],"in":[10],"patients":[11],"with":[12,26],"AML.":[13],"Based":[14],"on":[15],"these,":[16],"we":[17],"developed":[18],"validated":[20],"a":[21],"new":[22],"AML":[23],"risk":[24],"model":[25],"great":[27],"potential":[28],"for":[29],"predicting":[30],"patients'":[31],"survival.":[34]},"counts_by_year":[],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
