{"id":"https://openalex.org/W4409516877","doi":"https://doi.org/10.3389/fbinf.2025.1572241","title":"Genomic analysis of Listeria monocytogenes strains from dairy products in Ethiopia","display_name":"Genomic analysis of Listeria monocytogenes strains from dairy products in Ethiopia","publication_year":2025,"publication_date":"2025-04-16","ids":{"openalex":"https://openalex.org/W4409516877","doi":"https://doi.org/10.3389/fbinf.2025.1572241","pmid":"https://pubmed.ncbi.nlm.nih.gov/40309116"},"language":"en","primary_location":{"id":"doi:10.3389/fbinf.2025.1572241","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2025.1572241","pdf_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1572241/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1572241/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025386836","display_name":"Mebrie Zemene Kinde","orcid":"https://orcid.org/0000-0002-0018-778X"},"institutions":[{"id":"https://openalex.org/I8764889","display_name":"University of Gondar","ror":"https://ror.org/0595gz585","country_code":"ET","type":"education","lineage":["https://openalex.org/I8764889"]}],"countries":["ET"],"is_corresponding":true,"raw_author_name":"Mebrie Zemene Kinde","raw_affiliation_strings":["Department of Veterinary Biomedical Sciences, College of Veterinary Medicine and Animal Sciences, University of Gondar, Gondar, Ethiopia"],"affiliations":[{"raw_affiliation_string":"Department of Veterinary Biomedical Sciences, College of Veterinary Medicine and Animal Sciences, University of Gondar, Gondar, Ethiopia","institution_ids":["https://openalex.org/I8764889"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074816920","display_name":"Bizuayehu Kerisew","orcid":null},"institutions":[{"id":"https://openalex.org/I57092466","display_name":"Bahir Dar University","ror":"https://ror.org/01670bg46","country_code":"ET","type":"education","lineage":["https://openalex.org/I57092466"]}],"countries":["ET"],"is_corresponding":false,"raw_author_name":"Bizuayehu Kerisew","raw_affiliation_strings":["Department of Biology, Bahir Dar University, Bahir Dar, Ethiopia"],"affiliations":[{"raw_affiliation_string":"Department of Biology, Bahir Dar University, Bahir Dar, Ethiopia","institution_ids":["https://openalex.org/I57092466"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018147048","display_name":"Tegegne Eshetu","orcid":"https://orcid.org/0000-0003-3861-6954"},"institutions":[{"id":"https://openalex.org/I8764889","display_name":"University of Gondar","ror":"https://ror.org/0595gz585","country_code":"ET","type":"education","lineage":["https://openalex.org/I8764889"]}],"countries":["ET"],"is_corresponding":false,"raw_author_name":"Tegegne Eshetu","raw_affiliation_strings":["Department of Biomedical and Laboratory Science, College of Medicine and Health Science, University of Gondar, Gondar, Ethiopia"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical and Laboratory Science, College of Medicine and Health Science, University of Gondar, Gondar, Ethiopia","institution_ids":["https://openalex.org/I8764889"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059373660","display_name":"Abebe Tesfaye Gessese","orcid":"https://orcid.org/0000-0001-5674-5480"},"institutions":[{"id":"https://openalex.org/I8764889","display_name":"University of Gondar","ror":"https://ror.org/0595gz585","country_code":"ET","type":"education","lineage":["https://openalex.org/I8764889"]}],"countries":["ET"],"is_corresponding":false,"raw_author_name":"Abebe Tesfaye Gessese","raw_affiliation_strings":["Department of Veterinary Biomedical Sciences, College of Veterinary Medicine and Animal Sciences, University of Gondar, Gondar, Ethiopia"],"affiliations":[{"raw_affiliation_string":"Department of Veterinary Biomedical Sciences, College of Veterinary Medicine and Animal Sciences, University of Gondar, Gondar, Ethiopia","institution_ids":["https://openalex.org/I8764889"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5025386836"],"corresponding_institution_ids":["https://openalex.org/I8764889"],"apc_list":{"value":1900,"currency":"USD","value_usd":1900},"apc_paid":{"value":1900,"currency":"USD","value_usd":1900},"fwci":2.2231,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.85534329,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":98},"biblio":{"volume":"5","issue":null,"first_page":"1572241","last_page":"1572241"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10900","display_name":"Listeria monocytogenes in Food Safety","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1305","display_name":"Biotechnology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10900","display_name":"Listeria monocytogenes in Food Safety","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1305","display_name":"Biotechnology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11455","display_name":"Microbial Inactivation Methods","score":0.9930999875068665,"subfield":{"id":"https://openalex.org/subfields/1305","display_name":"Biotechnology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12388","display_name":"Identification and Quantification in Food","score":0.9911999702453613,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/listeria-monocytogenes","display_name":"Listeria monocytogenes","score":0.9084001779556274},{"id":"https://openalex.org/keywords/listeria","display_name":"Listeria","score":0.5650022625923157},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5381982922554016},{"id":"https://openalex.org/keywords/biotechnology","display_name":"Biotechnology","score":0.4568215012550354},{"id":"https://openalex.org/keywords/microbiology","display_name":"Microbiology","score":0.3979911804199219},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.257053405046463},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.20436671376228333}],"concepts":[{"id":"https://openalex.org/C2781350384","wikidata":"https://www.wikidata.org/wiki/Q292015","display_name":"Listeria monocytogenes","level":3,"score":0.9084001779556274},{"id":"https://openalex.org/C2778682378","wikidata":"https://www.wikidata.org/wiki/Q746209","display_name":"Listeria","level":4,"score":0.5650022625923157},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5381982922554016},{"id":"https://openalex.org/C150903083","wikidata":"https://www.wikidata.org/wiki/Q7108","display_name":"Biotechnology","level":1,"score":0.4568215012550354},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.3979911804199219},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.257053405046463},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.20436671376228333}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3389/fbinf.2025.1572241","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2025.1572241","pdf_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1572241/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40309116","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40309116","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:24c4b3ca81d8410fb8faee19ca434b47","is_oa":true,"landing_page_url":"https://doaj.org/article/24c4b3ca81d8410fb8faee19ca434b47","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Bioinformatics, Vol 5 (2025)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:12041059","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12041059","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Front Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3389/fbinf.2025.1572241","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2025.1572241","pdf_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1572241/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4409516877.pdf"},"referenced_works_count":66,"referenced_works":["https://openalex.org/W1487781539","https://openalex.org/W1510002394","https://openalex.org/W1968146772","https://openalex.org/W1991907825","https://openalex.org/W1997166030","https://openalex.org/W2027594950","https://openalex.org/W2038045439","https://openalex.org/W2038651784","https://openalex.org/W2044942649","https://openalex.org/W2053940732","https://openalex.org/W2054709656","https://openalex.org/W2059769936","https://openalex.org/W2081544227","https://openalex.org/W2095904560","https://openalex.org/W2098482477","https://openalex.org/W2103441770","https://openalex.org/W2131271579","https://openalex.org/W2135367983","https://openalex.org/W2142678478","https://openalex.org/W2143325926","https://openalex.org/W2167736149","https://openalex.org/W2186013731","https://openalex.org/W2259709515","https://openalex.org/W2395676059","https://openalex.org/W2530546106","https://openalex.org/W2558781241","https://openalex.org/W2625579714","https://openalex.org/W2768017947","https://openalex.org/W2794876646","https://openalex.org/W2803245377","https://openalex.org/W2809348075","https://openalex.org/W2889671575","https://openalex.org/W2891256159","https://openalex.org/W2898146810","https://openalex.org/W2900462705","https://openalex.org/W2949007191","https://openalex.org/W2962095692","https://openalex.org/W2964445303","https://openalex.org/W2982531295","https://openalex.org/W3006509899","https://openalex.org/W3014517142","https://openalex.org/W3023363503","https://openalex.org/W3033618271","https://openalex.org/W3090034530","https://openalex.org/W3092206744","https://openalex.org/W3137489031","https://openalex.org/W3181479613","https://openalex.org/W3204795332","https://openalex.org/W3217387989","https://openalex.org/W4212926889","https://openalex.org/W4225014992","https://openalex.org/W4240594805","https://openalex.org/W4251751280","https://openalex.org/W4309306080","https://openalex.org/W4310962191","https://openalex.org/W4380372297","https://openalex.org/W4384935561","https://openalex.org/W4390662690","https://openalex.org/W4390984304","https://openalex.org/W4391321222","https://openalex.org/W4391400717","https://openalex.org/W4393990972","https://openalex.org/W4402557213","https://openalex.org/W6739608076","https://openalex.org/W6744675450","https://openalex.org/W6801097575"],"related_works":["https://openalex.org/W116057145","https://openalex.org/W2005594846","https://openalex.org/W1967818116","https://openalex.org/W3092701095","https://openalex.org/W4253561265","https://openalex.org/W2468232659","https://openalex.org/W2379459027","https://openalex.org/W4239893695","https://openalex.org/W2152345459","https://openalex.org/W2377277576"],"abstract_inverted_index":{"This":[0],"study":[1,178],"explored":[2],"virulence":[3,54],"genes,":[4,7,107],"antibiotic":[5,80,211],"resistance":[6,81,106,128],"and":[8,19,40,42,49,116,142,150,166,213,217],"mobile":[9,100],"genetic":[10,101],"elements":[11,102],"in":[12,68,120,138,157,189,204],"14":[13,60],"<i>Listeria":[14],"monocytogenes</i>":[15,75,188,203],"strains":[16,29,70,76,141,147],"from":[17,23,132],"milk":[18],"dairy":[20,192,205],"products":[21],"collected":[22],"different":[24,50],"regions":[25],"of":[26,144,186,201,221],"Ethiopia.":[27],"The":[28],"were":[30,56,103,118,129,155],"classified":[31],"into":[32,45,182],"two":[33],"Multilocus":[34],"Sequence":[35],"Typing":[36],"sequence":[37],"types":[38],"(ST2":[39],"ST45)":[41],"further":[43],"grouped":[44],"clonal":[46],"complexes":[47],"(CC2)":[48],"cgMLST":[51],"types.":[52],"Twenty-nine":[53],"genes":[55,82,124,168],"identified":[57,119,131],"across":[58],"all":[59,69,121,133,139],"strains,":[61],"with":[62],"<i>lplA1</i>":[63],"detected":[64],"at":[65],"higher":[66],"levels":[67],"except":[71],"SAMN28661660.":[72],"All":[73],"<i>L.":[74,187,202],"also":[77],"carried":[78],"four":[79],"(<i>fosX</i>,":[83],"<i>lin</i>,":[84],"<i>norB</i>,":[85],"<i>mprF</i>),":[86],"contributing":[87],"to":[88,91,197],"their":[89],"ability":[90],"withstand":[92],"multiple":[93],"antimicrobial":[94],"agents.":[95],"Notably,":[96],"no":[97],"plasmids":[98],"or":[99],"detected.":[104],"Stress":[105],"including":[108],"<i>stress":[109],"survival":[110],"islet":[111],"1</i>":[112],"(<i>SSI1_lmo0447</i>),":[113],"<i>lmo":[114],"1800</i>,":[115],"<i>lmo1799</i>,":[117],"strains.":[122,134,159],"However,":[123],"encoding":[125],"for":[126],"disinfectant":[127],"not":[130],"LGI-2":[135],"was":[136],"found":[137,156],"the":[140,145,177,183,190],"none":[143],"studied":[146],"harbored":[148],"LGI-1":[149],"LGI-3.":[151],"Conserved":[152],"CRISPR-Cas":[153],"systems":[154],"some":[158],"KEGG":[160],"pathway":[161],"analysis":[162],"revealed":[163],"that":[164],"<i>inlA</i>":[165],"<i>inlB</i>":[167],"facilitate":[169],"bacterial":[170],"internalization":[171],"through":[172],"host":[173],"actin":[174],"polymerization.":[175],"Overall,":[176],"provided":[179],"crucial":[180,196],"insights":[181],"genomic":[184],"features":[185],"Ethiopian":[191],"chain.":[193],"It":[194],"is":[195],"establish":[198],"continuous":[199],"monitoring":[200],"products,":[206],"improve":[207],"sanitation,":[208],"enforce":[209],"stricter":[210],"usage":[212],"food":[214],"safety":[215],"regulations,":[216],"raise":[218],"public":[219],"awareness":[220],"associated":[222],"risks.":[223]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-04-17T00:00:00"}
