{"id":"https://openalex.org/W4410134908","doi":"https://doi.org/10.3389/fbinf.2025.1571476","title":"Tumor tissue-of-origin classification using miRNA-mRNA-lncRNA interaction networks and machine learning methods","display_name":"Tumor tissue-of-origin classification using miRNA-mRNA-lncRNA interaction networks and machine learning methods","publication_year":2025,"publication_date":"2025-05-06","ids":{"openalex":"https://openalex.org/W4410134908","doi":"https://doi.org/10.3389/fbinf.2025.1571476","pmid":"https://pubmed.ncbi.nlm.nih.gov/40395370"},"language":"en","primary_location":{"id":"doi:10.3389/fbinf.2025.1571476","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2025.1571476","pdf_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1571476/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1571476/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021061770","display_name":"Ankita Lawarde","orcid":"https://orcid.org/0000-0001-7572-4431"},"institutions":[{"id":"https://openalex.org/I4210165715","display_name":"Competence Centre on Health Technologies (Estonia)","ror":"https://ror.org/05kagrs11","country_code":"EE","type":"company","lineage":["https://openalex.org/I4210165715"]},{"id":"https://openalex.org/I56085075","display_name":"University of Tartu","ror":"https://ror.org/03z77qz90","country_code":"EE","type":"education","lineage":["https://openalex.org/I56085075"]}],"countries":["EE"],"is_corresponding":false,"raw_author_name":"Ankita Lawarde","raw_affiliation_strings":["Celvia CC AS, Tartu, Estonia","Department of Obstetrics and Gynecology, Institute of Clinical Medicine, University of Tartu, Tartu, Estonia"],"affiliations":[{"raw_affiliation_string":"Celvia CC AS, Tartu, Estonia","institution_ids":["https://openalex.org/I4210165715"]},{"raw_affiliation_string":"Department of Obstetrics and Gynecology, Institute of Clinical Medicine, University of Tartu, Tartu, Estonia","institution_ids":["https://openalex.org/I56085075"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002678517","display_name":"Masuma Khatun","orcid":"https://orcid.org/0000-0003-2976-2319"},"institutions":[{"id":"https://openalex.org/I2800394112","display_name":"Helsinki University Hospital","ror":"https://ror.org/02e8hzf44","country_code":"FI","type":"healthcare","lineage":["https://openalex.org/I2800394112","https://openalex.org/I4210166427"]},{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Masuma Khatun","raw_affiliation_strings":["Department of Obstetrics and Gynecology, University of Helsinki, Helsinki University Central Hospital, Helsinki, Finland"],"affiliations":[{"raw_affiliation_string":"Department of Obstetrics and Gynecology, University of Helsinki, Helsinki University Central Hospital, Helsinki, Finland","institution_ids":["https://openalex.org/I2800394112","https://openalex.org/I133731052"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048130381","display_name":"Prakash Lingasamy","orcid":"https://orcid.org/0000-0002-8826-4531"},"institutions":[{"id":"https://openalex.org/I4210165715","display_name":"Competence Centre on Health Technologies (Estonia)","ror":"https://ror.org/05kagrs11","country_code":"EE","type":"company","lineage":["https://openalex.org/I4210165715"]},{"id":"https://openalex.org/I56085075","display_name":"University of Tartu","ror":"https://ror.org/03z77qz90","country_code":"EE","type":"education","lineage":["https://openalex.org/I56085075"]}],"countries":["EE"],"is_corresponding":false,"raw_author_name":"Prakash Lingasamy","raw_affiliation_strings":["Celvia CC AS, Tartu, Estonia","Department of Obstetrics and Gynecology, Institute of Clinical Medicine, University of Tartu, Tartu, Estonia"],"affiliations":[{"raw_affiliation_string":"Celvia CC AS, Tartu, Estonia","institution_ids":["https://openalex.org/I4210165715"]},{"raw_affiliation_string":"Department of Obstetrics and Gynecology, Institute of Clinical Medicine, University of Tartu, Tartu, Estonia","institution_ids":["https://openalex.org/I56085075"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061962903","display_name":"Andres Salumets","orcid":"https://orcid.org/0000-0002-1251-8160"},"institutions":[{"id":"https://openalex.org/I56085075","display_name":"University of Tartu","ror":"https://ror.org/03z77qz90","country_code":"EE","type":"education","lineage":["https://openalex.org/I56085075"]},{"id":"https://openalex.org/I1335113835","display_name":"Karolinska University Hospital","ror":"https://ror.org/00m8d6786","country_code":"SE","type":"healthcare","lineage":["https://openalex.org/I1335113835"]},{"id":"https://openalex.org/I4210165715","display_name":"Competence Centre on Health Technologies (Estonia)","ror":"https://ror.org/05kagrs11","country_code":"EE","type":"company","lineage":["https://openalex.org/I4210165715"]}],"countries":["EE","SE"],"is_corresponding":true,"raw_author_name":"Andres Salumets","raw_affiliation_strings":["Celvia CC AS, Tartu, Estonia","Department of Obstetrics and Gynecology, Institute of Clinical Medicine, University of Tartu, Tartu, Estonia","Division of Obstetrics and Gynecology, Department of Clinical Science, Intervention and Technology (CLINTEC), Karolinska Institute, and Karolinska University Hospital, Huddinge, Stockholm, Sweden"],"affiliations":[{"raw_affiliation_string":"Celvia CC AS, Tartu, Estonia","institution_ids":["https://openalex.org/I4210165715"]},{"raw_affiliation_string":"Department of Obstetrics and Gynecology, Institute of Clinical Medicine, University of Tartu, Tartu, Estonia","institution_ids":["https://openalex.org/I56085075"]},{"raw_affiliation_string":"Division of Obstetrics and Gynecology, Department of Clinical Science, Intervention and Technology (CLINTEC), Karolinska Institute, and Karolinska University Hospital, Huddinge, Stockholm, Sweden","institution_ids":["https://openalex.org/I1335113835"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009143087","display_name":"Vijayachitra Modhukur","orcid":"https://orcid.org/0000-0002-7123-9903"},"institutions":[{"id":"https://openalex.org/I4210165715","display_name":"Competence Centre on Health Technologies (Estonia)","ror":"https://ror.org/05kagrs11","country_code":"EE","type":"company","lineage":["https://openalex.org/I4210165715"]},{"id":"https://openalex.org/I56085075","display_name":"University of Tartu","ror":"https://ror.org/03z77qz90","country_code":"EE","type":"education","lineage":["https://openalex.org/I56085075"]}],"countries":["EE"],"is_corresponding":true,"raw_author_name":"Vijayachitra Modhukur","raw_affiliation_strings":["Celvia CC AS, Tartu, Estonia","Department of Obstetrics and Gynecology, Institute of Clinical Medicine, University of Tartu, Tartu, Estonia"],"affiliations":[{"raw_affiliation_string":"Celvia CC AS, Tartu, Estonia","institution_ids":["https://openalex.org/I4210165715"]},{"raw_affiliation_string":"Department of Obstetrics and Gynecology, Institute of Clinical Medicine, University of Tartu, Tartu, Estonia","institution_ids":["https://openalex.org/I56085075"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5009143087","https://openalex.org/A5061962903"],"corresponding_institution_ids":["https://openalex.org/I1335113835","https://openalex.org/I4210165715","https://openalex.org/I56085075"],"apc_list":{"value":1900,"currency":"USD","value_usd":1900},"apc_paid":{"value":1900,"currency":"USD","value_usd":1900},"fwci":2.5058,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.88967961,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":98},"biblio":{"volume":"5","issue":null,"first_page":"1571476","last_page":"1571476"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9484000205993652,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.6961588859558105},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5451785922050476},{"id":"https://openalex.org/keywords/messenger-rna","display_name":"Messenger RNA","score":0.5431262254714966},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5039548277854919},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4990501403808594},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.405023992061615},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3374248147010803},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.15128976106643677},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1186821460723877}],"concepts":[{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.6961588859558105},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5451785922050476},{"id":"https://openalex.org/C105580179","wikidata":"https://www.wikidata.org/wiki/Q188928","display_name":"Messenger RNA","level":3,"score":0.5431262254714966},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5039548277854919},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4990501403808594},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.405023992061615},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3374248147010803},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15128976106643677},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1186821460723877}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3389/fbinf.2025.1571476","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2025.1571476","pdf_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1571476/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40395370","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40395370","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:87b6a23e25fc45998e0c4199a3fca7f0","is_oa":true,"landing_page_url":"https://doaj.org/article/87b6a23e25fc45998e0c4199a3fca7f0","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Bioinformatics, Vol 5 (2025)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:12088952","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12088952","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Front Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3389/fbinf.2025.1571476","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2025.1571476","pdf_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1571476/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4410134908.pdf"},"referenced_works_count":98,"referenced_works":["https://openalex.org/W1569917817","https://openalex.org/W1976149758","https://openalex.org/W2025199750","https://openalex.org/W2044832480","https://openalex.org/W2046387002","https://openalex.org/W2083381199","https://openalex.org/W2096283457","https://openalex.org/W2099676867","https://openalex.org/W2127865182","https://openalex.org/W2129204554","https://openalex.org/W2130687298","https://openalex.org/W2142352901","https://openalex.org/W2275877493","https://openalex.org/W2293894278","https://openalex.org/W2329659234","https://openalex.org/W2511288941","https://openalex.org/W2579522812","https://openalex.org/W2604737133","https://openalex.org/W2736520162","https://openalex.org/W2736949652","https://openalex.org/W2741525537","https://openalex.org/W2742870892","https://openalex.org/W2779695949","https://openalex.org/W2887973500","https://openalex.org/W2904031498","https://openalex.org/W2919918774","https://openalex.org/W2923534613","https://openalex.org/W2939511186","https://openalex.org/W2946714259","https://openalex.org/W2949685204","https://openalex.org/W2951391897","https://openalex.org/W2955512611","https://openalex.org/W2963197267","https://openalex.org/W2963925536","https://openalex.org/W2980432908","https://openalex.org/W2991417010","https://openalex.org/W3007449250","https://openalex.org/W3012111622","https://openalex.org/W3012491561","https://openalex.org/W3024491630","https://openalex.org/W3030635214","https://openalex.org/W3038751622","https://openalex.org/W3044459838","https://openalex.org/W3114632245","https://openalex.org/W3119246756","https://openalex.org/W3127992645","https://openalex.org/W3129379232","https://openalex.org/W3130164520","https://openalex.org/W3133811159","https://openalex.org/W3134153391","https://openalex.org/W3134270509","https://openalex.org/W3136261983","https://openalex.org/W3137675424","https://openalex.org/W3157768825","https://openalex.org/W3162715278","https://openalex.org/W3164245268","https://openalex.org/W3186318400","https://openalex.org/W3191146867","https://openalex.org/W3203635731","https://openalex.org/W3214581619","https://openalex.org/W4200620750","https://openalex.org/W4205326779","https://openalex.org/W4213366301","https://openalex.org/W4220903131","https://openalex.org/W4281734106","https://openalex.org/W4282937915","https://openalex.org/W4284991672","https://openalex.org/W4288967758","https://openalex.org/W4295106636","https://openalex.org/W4295414130","https://openalex.org/W4297369507","https://openalex.org/W4303021221","https://openalex.org/W4309944287","https://openalex.org/W4310641306","https://openalex.org/W4310811683","https://openalex.org/W4313650905","https://openalex.org/W4321792213","https://openalex.org/W4362585644","https://openalex.org/W4365513623","https://openalex.org/W4382725355","https://openalex.org/W4383820630","https://openalex.org/W4386516124","https://openalex.org/W4387662905","https://openalex.org/W4390472019","https://openalex.org/W4391126187","https://openalex.org/W4391225439","https://openalex.org/W4393935425","https://openalex.org/W4395470181","https://openalex.org/W4399089096","https://openalex.org/W4399592967","https://openalex.org/W4399751704","https://openalex.org/W4399863456","https://openalex.org/W4400178615","https://openalex.org/W4401878456","https://openalex.org/W4402399309","https://openalex.org/W4403987776","https://openalex.org/W4406431707","https://openalex.org/W6838627734"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W4387369504","https://openalex.org/W4394896187","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W3107602296","https://openalex.org/W4364306694","https://openalex.org/W4312192474","https://openalex.org/W4283697347"],"abstract_inverted_index":{"Our":[0],"integrated":[1],"framework":[2],"provides":[3],"a":[4],"biologically":[5],"grounded,":[6],"interpretable,":[7],"and":[8,32,52],"highly":[9],"accurate":[10],"approach":[11],"for":[12],"tumor":[13],"tissue-of-origin":[14],"classification.":[15,60],"The":[16],"identified":[17],"miRNA":[18,42],"biomarkers":[19],"demonstrate":[20],"strong":[21],"translational":[22],"potential,":[23],"supported":[24],"by":[25],"clinical":[26],"trial":[27],"overlap,":[28],"drug":[29],"sensitivity":[30],"data,":[31],"survival":[33],"analyses.":[34],"This":[35],"work":[36],"highlights":[37],"the":[38],"power":[39],"of":[40,56],"combining":[41],"network":[43],"biology":[44],"with":[45],"ML":[46],"to":[47],"improve":[48],"precision":[49],"oncology":[50],"diagnostics":[51],"supports":[53],"future":[54],"development":[55],"liquid":[57],"biopsy-based":[58],"cancer":[59]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
