{"id":"https://openalex.org/W4410133260","doi":"https://doi.org/10.3389/fbinf.2025.1523184","title":"pubCounteR: an R package for interrogating published literature for experimentally-derived gene lists within a user-defined biological context","display_name":"pubCounteR: an R package for interrogating published literature for experimentally-derived gene lists within a user-defined biological context","publication_year":2025,"publication_date":"2025-05-06","ids":{"openalex":"https://openalex.org/W4410133260","doi":"https://doi.org/10.3389/fbinf.2025.1523184","pmid":"https://pubmed.ncbi.nlm.nih.gov/40438466"},"language":"en","primary_location":{"id":"doi:10.3389/fbinf.2025.1523184","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2025.1523184","pdf_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1523184/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1523184/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028947279","display_name":"Marina Leer","orcid":null},"institutions":[{"id":"https://openalex.org/I4210162705","display_name":"German Institute of Human Nutrition","ror":"https://ror.org/05xdczy51","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210162705"]},{"id":"https://openalex.org/I4210160326","display_name":"German Center for Diabetes Research","ror":"https://ror.org/04qq88z54","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210160326","https://openalex.org/I4405256427"]},{"id":"https://openalex.org/I44260953","display_name":"Heinrich Heine University D\u00fcsseldorf","ror":"https://ror.org/024z2rq82","country_code":"DE","type":"education","lineage":["https://openalex.org/I44260953"]},{"id":"https://openalex.org/I4210152419","display_name":"Deutsches Diabetes-Zentrum e.V.","ror":"https://ror.org/04ews3245","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210152419","https://openalex.org/I44260953"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Marina Leer","raw_affiliation_strings":["Department of Adipocyte Development, German Institute of Human Nutrition Potsdam-Rehbr\u00fccke (DIfE), Nuthetal, Germany","German Center for Diabetes Research (DZD), Neuherberg, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Adipocyte Development, German Institute of Human Nutrition Potsdam-Rehbr\u00fccke (DIfE), Nuthetal, Germany","institution_ids":["https://openalex.org/I4210162705"]},{"raw_affiliation_string":"German Center for Diabetes Research (DZD), Neuherberg, Germany","institution_ids":["https://openalex.org/I4210160326","https://openalex.org/I44260953","https://openalex.org/I4210152419"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000525390","display_name":"George A. Soultoukis","orcid":"https://orcid.org/0000-0002-7290-1444"},"institutions":[{"id":"https://openalex.org/I4210162705","display_name":"German Institute of Human Nutrition","ror":"https://ror.org/05xdczy51","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210162705"]},{"id":"https://openalex.org/I4210152419","display_name":"Deutsches Diabetes-Zentrum e.V.","ror":"https://ror.org/04ews3245","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210152419","https://openalex.org/I44260953"]},{"id":"https://openalex.org/I44260953","display_name":"Heinrich Heine University D\u00fcsseldorf","ror":"https://ror.org/024z2rq82","country_code":"DE","type":"education","lineage":["https://openalex.org/I44260953"]},{"id":"https://openalex.org/I4210160326","display_name":"German Center for Diabetes Research","ror":"https://ror.org/04qq88z54","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210160326","https://openalex.org/I4405256427"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"George A. Soultoukis","raw_affiliation_strings":["Department of Adipocyte Development, German Institute of Human Nutrition Potsdam-Rehbr\u00fccke (DIfE), Nuthetal, Germany","German Center for Diabetes Research (DZD), Neuherberg, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Adipocyte Development, German Institute of Human Nutrition Potsdam-Rehbr\u00fccke (DIfE), Nuthetal, Germany","institution_ids":["https://openalex.org/I4210162705"]},{"raw_affiliation_string":"German Center for Diabetes Research (DZD), Neuherberg, Germany","institution_ids":["https://openalex.org/I4210160326","https://openalex.org/I44260953","https://openalex.org/I4210152419"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064668250","display_name":"Markus J\u00e4hnert","orcid":"https://orcid.org/0000-0001-6459-7318"},"institutions":[{"id":"https://openalex.org/I4210160326","display_name":"German Center for Diabetes Research","ror":"https://ror.org/04qq88z54","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210160326","https://openalex.org/I4405256427"]},{"id":"https://openalex.org/I44260953","display_name":"Heinrich Heine University D\u00fcsseldorf","ror":"https://ror.org/024z2rq82","country_code":"DE","type":"education","lineage":["https://openalex.org/I44260953"]},{"id":"https://openalex.org/I4210152419","display_name":"Deutsches Diabetes-Zentrum e.V.","ror":"https://ror.org/04ews3245","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210152419","https://openalex.org/I44260953"]},{"id":"https://openalex.org/I4210162705","display_name":"German Institute of Human Nutrition","ror":"https://ror.org/05xdczy51","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210162705"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Markus J\u00e4hnert","raw_affiliation_strings":["Department of Experimental Diabetology, German Institute of Human Nutrition Potsdam-Rehbr\u00fccke (DIfE), Nuthetal, Germany","German Center for Diabetes Research (DZD), Neuherberg, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Experimental Diabetology, German Institute of Human Nutrition Potsdam-Rehbr\u00fccke (DIfE), Nuthetal, Germany","institution_ids":["https://openalex.org/I4210162705"]},{"raw_affiliation_string":"German Center for Diabetes Research (DZD), Neuherberg, Germany","institution_ids":["https://openalex.org/I4210160326","https://openalex.org/I44260953","https://openalex.org/I4210152419"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5093345666","display_name":"Masoome Oveisi","orcid":null},"institutions":[{"id":"https://openalex.org/I4210160326","display_name":"German Center for Diabetes Research","ror":"https://ror.org/04qq88z54","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210160326","https://openalex.org/I4405256427"]},{"id":"https://openalex.org/I4210152419","display_name":"Deutsches Diabetes-Zentrum e.V.","ror":"https://ror.org/04ews3245","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210152419","https://openalex.org/I44260953"]},{"id":"https://openalex.org/I44260953","display_name":"Heinrich Heine University D\u00fcsseldorf","ror":"https://ror.org/024z2rq82","country_code":"DE","type":"education","lineage":["https://openalex.org/I44260953"]},{"id":"https://openalex.org/I4210162705","display_name":"German Institute of Human Nutrition","ror":"https://ror.org/05xdczy51","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210162705"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Masoome Oveisi","raw_affiliation_strings":["Department of Adipocyte Development, German Institute of Human Nutrition Potsdam-Rehbr\u00fccke (DIfE), Nuthetal, Germany","German Center for Diabetes Research (DZD), Neuherberg, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Adipocyte Development, German Institute of Human Nutrition Potsdam-Rehbr\u00fccke (DIfE), Nuthetal, Germany","institution_ids":["https://openalex.org/I4210162705"]},{"raw_affiliation_string":"German Center for Diabetes Research (DZD), Neuherberg, Germany","institution_ids":["https://openalex.org/I4210160326","https://openalex.org/I44260953","https://openalex.org/I4210152419"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061247186","display_name":"Dirk Walther","orcid":"https://orcid.org/0000-0002-5755-9265"},"institutions":[{"id":"https://openalex.org/I4210105972","display_name":"Max Planck Institute of Molecular Plant Physiology","ror":"https://ror.org/01fbde567","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210105972"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Dirk Walther","raw_affiliation_strings":["Bioinformatics, Max Planck Institute of Molecular Plant Physiology, Potsdam, Germany"],"affiliations":[{"raw_affiliation_string":"Bioinformatics, Max Planck Institute of Molecular Plant Physiology, Potsdam, Germany","institution_ids":["https://openalex.org/I4210105972"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076337595","display_name":"Tim J. Schulz","orcid":"https://orcid.org/0000-0002-8413-3972"},"institutions":[{"id":"https://openalex.org/I4210162705","display_name":"German Institute of Human Nutrition","ror":"https://ror.org/05xdczy51","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210162705"]},{"id":"https://openalex.org/I176453806","display_name":"University of Potsdam","ror":"https://ror.org/03bnmw459","country_code":"DE","type":"education","lineage":["https://openalex.org/I176453806"]},{"id":"https://openalex.org/I44260953","display_name":"Heinrich Heine University D\u00fcsseldorf","ror":"https://ror.org/024z2rq82","country_code":"DE","type":"education","lineage":["https://openalex.org/I44260953"]},{"id":"https://openalex.org/I4210160326","display_name":"German Center for Diabetes Research","ror":"https://ror.org/04qq88z54","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210160326","https://openalex.org/I4405256427"]},{"id":"https://openalex.org/I4210152419","display_name":"Deutsches Diabetes-Zentrum e.V.","ror":"https://ror.org/04ews3245","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210152419","https://openalex.org/I44260953"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Tim J. Schulz","raw_affiliation_strings":["Department of Adipocyte Development, German Institute of Human Nutrition Potsdam-Rehbr\u00fccke (DIfE), Nuthetal, Germany","German Center for Diabetes Research (DZD), Neuherberg, Germany","Institute of Nutritional Science, University of Potsdam, Potsdam, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Adipocyte Development, German Institute of Human Nutrition Potsdam-Rehbr\u00fccke (DIfE), Nuthetal, Germany","institution_ids":["https://openalex.org/I4210162705"]},{"raw_affiliation_string":"German Center for Diabetes Research (DZD), Neuherberg, Germany","institution_ids":["https://openalex.org/I4210160326","https://openalex.org/I44260953","https://openalex.org/I4210152419"]},{"raw_affiliation_string":"Institute of Nutritional Science, University of Potsdam, Potsdam, Germany","institution_ids":["https://openalex.org/I176453806"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5028947279","https://openalex.org/A5076337595"],"corresponding_institution_ids":["https://openalex.org/I176453806","https://openalex.org/I4210152419","https://openalex.org/I4210160326","https://openalex.org/I4210162705","https://openalex.org/I44260953"],"apc_list":{"value":1900,"currency":"USD","value_usd":1900},"apc_paid":{"value":1900,"currency":"USD","value_usd":1900},"fwci":0.7244,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.69738491,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"5","issue":null,"first_page":"1523184","last_page":"1523184"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.7294541001319885},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.5576984882354736},{"id":"https://openalex.org/keywords/epigenomics","display_name":"Epigenomics","score":0.5407538414001465},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5249260067939758},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.5204577445983887},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5198743343353271},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5109514594078064},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.48831483721733093},{"id":"https://openalex.org/keywords/functional-genomics","display_name":"Functional genomics","score":0.47606438398361206},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.45747989416122437},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.41961103677749634},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.35459262132644653},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.34213757514953613},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.28278690576553345},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2078615427017212},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.15040144324302673},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.13604918122291565}],"concepts":[{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.7294541001319885},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.5576984882354736},{"id":"https://openalex.org/C121912465","wikidata":"https://www.wikidata.org/wiki/Q3589153","display_name":"Epigenomics","level":5,"score":0.5407538414001465},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5249260067939758},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.5204577445983887},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5198743343353271},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5109514594078064},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.48831483721733093},{"id":"https://openalex.org/C161078062","wikidata":"https://www.wikidata.org/wiki/Q1068690","display_name":"Functional genomics","level":5,"score":0.47606438398361206},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.45747989416122437},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.41961103677749634},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.35459262132644653},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.34213757514953613},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.28278690576553345},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2078615427017212},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15040144324302673},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.13604918122291565},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.0},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.3389/fbinf.2025.1523184","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2025.1523184","pdf_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1523184/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40438466","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40438466","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:917a00e4c59b4a358a81a4f8694db04e","is_oa":true,"landing_page_url":"https://doaj.org/article/917a00e4c59b4a358a81a4f8694db04e","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Bioinformatics, Vol 5 (2025)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:12118352","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12118352","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Front Bioinform","raw_type":"Text"},{"id":"pmh:oai:pure.mpg.de:item_3650073","is_oa":false,"landing_page_url":"https://hdl.handle.net/21.11116/0000-0011-2816-8","pdf_url":null,"source":{"id":"https://openalex.org/S4306400654","display_name":"MPG.PuRe (Max Planck Society)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.3389/fbinf.2025.1523184","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2025.1523184","pdf_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1523184/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4410133260.pdf"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W2020372413","https://openalex.org/W2041940800","https://openalex.org/W2103017472","https://openalex.org/W2107580398","https://openalex.org/W2123500593","https://openalex.org/W2168316093","https://openalex.org/W2173732482","https://openalex.org/W2595342131","https://openalex.org/W3092260431","https://openalex.org/W3189617125","https://openalex.org/W4251447235","https://openalex.org/W4308834638","https://openalex.org/W4323036511","https://openalex.org/W4367188881","https://openalex.org/W4376643691","https://openalex.org/W4378172771","https://openalex.org/W4389518954","https://openalex.org/W4394976547","https://openalex.org/W6851978328","https://openalex.org/W6877028498"],"related_works":["https://openalex.org/W2360935227","https://openalex.org/W2364993072","https://openalex.org/W2115576822","https://openalex.org/W2356429006","https://openalex.org/W2380568150","https://openalex.org/W2385787406","https://openalex.org/W2155595079","https://openalex.org/W2263355832","https://openalex.org/W284518807","https://openalex.org/W2359059295"],"abstract_inverted_index":{"Basic":[0],"and":[1,17,60],"clinical":[2],"biomedical":[3],"research":[4,23],"relies":[5],"heavily":[6],"on":[7],"modern":[8],"large-scale":[9],"datasets":[10],"that":[11,32,63],"include":[12],"genomics,":[13],"transcriptomics,":[14],"epigenomics,":[15],"metabolomics,":[16],"proteomics,":[18],"among":[19],"other":[20],"\"Omics\".":[21],"These":[22],"tools":[24],"very":[25],"often":[26],"generate":[27],"lists":[28],"of":[29,51,70],"candidate":[30],"genes":[31],"are":[33],"hypothesized":[34],"or":[35],"shown":[36],"to":[37],"be":[38],"responsible":[39],"for":[40,77],"the":[41,48],"biological":[42,49,75],"effect":[43],"in":[44],"question.":[45],"To":[46],"aid":[47],"interpretation":[50],"experimentally-obtained":[52],"gene":[53,79],"lists,":[54],"we":[55],"developed":[56],"pubCounteR,":[57],"an":[58],"R-package":[59],"web-based":[61],"interface":[62],"screens":[64],"publications":[65],"by":[66],"a":[67,73],"user-defined":[68],"set":[69],"keywords":[71],"representing":[72],"specific":[74],"context":[76],"experimentally-derived":[78],"lists.":[80]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
