{"id":"https://openalex.org/W4409557366","doi":"https://doi.org/10.3389/fbinf.2025.1522401","title":"Biomarker-driven drug repurposing for NAFLD-associated hepatocellular carcinoma using machine learning integrated ensemble feature selection","display_name":"Biomarker-driven drug repurposing for NAFLD-associated hepatocellular carcinoma using machine learning integrated ensemble feature selection","publication_year":2025,"publication_date":"2025-04-17","ids":{"openalex":"https://openalex.org/W4409557366","doi":"https://doi.org/10.3389/fbinf.2025.1522401","pmid":"https://pubmed.ncbi.nlm.nih.gov/40313868"},"language":"en","primary_location":{"id":"doi:10.3389/fbinf.2025.1522401","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2025.1522401","pdf_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1522401/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1522401/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102716545","display_name":"Subhajit Ghosh","orcid":"https://orcid.org/0000-0002-2897-5956"},"institutions":[{"id":"https://openalex.org/I56090587","display_name":"North Bengal University","ror":"https://ror.org/039w8qr24","country_code":"IN","type":"education","lineage":["https://openalex.org/I56090587"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Subhajit Ghosh","raw_affiliation_strings":["Department of Bioinformatics, University of North Bengal, Darjeeling, West Bengal, India"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, University of North Bengal, Darjeeling, West Bengal, India","institution_ids":["https://openalex.org/I56090587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078804878","display_name":"Sukhen Das Mandal","orcid":"https://orcid.org/0000-0001-7505-2225"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Sukhen Das Mandal","raw_affiliation_strings":["Department of Computer Science and Engineering, Ghani Khan Choudhury Institute of Engineering and Technology (GKCIET), Malda, India"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Ghani Khan Choudhury Institute of Engineering and Technology (GKCIET), Malda, India","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5022220434","display_name":"Subarna Thakur","orcid":"https://orcid.org/0000-0003-4437-8665"},"institutions":[{"id":"https://openalex.org/I56090587","display_name":"North Bengal University","ror":"https://ror.org/039w8qr24","country_code":"IN","type":"education","lineage":["https://openalex.org/I56090587"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Subarna Thakur","raw_affiliation_strings":["Department of Bioinformatics, University of North Bengal, Darjeeling, West Bengal, India"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, University of North Bengal, Darjeeling, West Bengal, India","institution_ids":["https://openalex.org/I56090587"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5022220434","https://openalex.org/A5078804878"],"corresponding_institution_ids":["https://openalex.org/I56090587"],"apc_list":{"value":1900,"currency":"USD","value_usd":1900},"apc_paid":{"value":1900,"currency":"USD","value_usd":1900},"fwci":2.4192,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.87806994,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":98},"biblio":{"volume":"5","issue":null,"first_page":"1522401","last_page":"1522401"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10351","display_name":"Liver Disease Diagnosis and Treatment","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10351","display_name":"Liver Disease Diagnosis and Treatment","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12465","display_name":"Cancer, Lipids, and Metabolism","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/feature-selection","display_name":"Feature selection","score":0.7411662936210632},{"id":"https://openalex.org/keywords/drug-repositioning","display_name":"Drug repositioning","score":0.6940675973892212},{"id":"https://openalex.org/keywords/hepatocellular-carcinoma","display_name":"Hepatocellular carcinoma","score":0.6383299231529236},{"id":"https://openalex.org/keywords/biomarker","display_name":"Biomarker","score":0.5376431345939636},{"id":"https://openalex.org/keywords/steatohepatitis","display_name":"Steatohepatitis","score":0.5224694013595581},{"id":"https://openalex.org/keywords/sorafenib","display_name":"Sorafenib","score":0.4682140350341797},{"id":"https://openalex.org/keywords/repurposing","display_name":"Repurposing","score":0.4505128264427185},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.4426226317882538},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.42143696546554565},{"id":"https://openalex.org/keywords/ensemble-learning","display_name":"Ensemble learning","score":0.4186479449272156},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3743181824684143},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.35994595289230347},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.35678011178970337},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.34493288397789},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.3065471053123474},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3063634932041168},{"id":"https://openalex.org/keywords/fatty-liver","display_name":"Fatty liver","score":0.29787328839302063},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.27314549684524536},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.259579598903656},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.09909334778785706}],"concepts":[{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.7411662936210632},{"id":"https://openalex.org/C103637391","wikidata":"https://www.wikidata.org/wiki/Q5308921","display_name":"Drug repositioning","level":3,"score":0.6940675973892212},{"id":"https://openalex.org/C2778019345","wikidata":"https://www.wikidata.org/wiki/Q1148337","display_name":"Hepatocellular carcinoma","level":2,"score":0.6383299231529236},{"id":"https://openalex.org/C2781197716","wikidata":"https://www.wikidata.org/wiki/Q864574","display_name":"Biomarker","level":2,"score":0.5376431345939636},{"id":"https://openalex.org/C2779478299","wikidata":"https://www.wikidata.org/wiki/Q2335423","display_name":"Steatohepatitis","level":4,"score":0.5224694013595581},{"id":"https://openalex.org/C2778695046","wikidata":"https://www.wikidata.org/wiki/Q421136","display_name":"Sorafenib","level":3,"score":0.4682140350341797},{"id":"https://openalex.org/C519536355","wikidata":"https://www.wikidata.org/wiki/Q21021151","display_name":"Repurposing","level":2,"score":0.4505128264427185},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.4426226317882538},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.42143696546554565},{"id":"https://openalex.org/C45942800","wikidata":"https://www.wikidata.org/wiki/Q245652","display_name":"Ensemble learning","level":2,"score":0.4186479449272156},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3743181824684143},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.35994595289230347},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.35678011178970337},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.34493288397789},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.3065471053123474},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3063634932041168},{"id":"https://openalex.org/C2778772119","wikidata":"https://www.wikidata.org/wiki/Q6058862","display_name":"Fatty liver","level":3,"score":0.29787328839302063},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.27314549684524536},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.259579598903656},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.09909334778785706},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3389/fbinf.2025.1522401","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2025.1522401","pdf_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1522401/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40313868","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40313868","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:949de1d410144910a0bef5b1c2783297","is_oa":true,"landing_page_url":"https://doaj.org/article/949de1d410144910a0bef5b1c2783297","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Bioinformatics, Vol 5 (2025)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:12043677","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12043677","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Front Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3389/fbinf.2025.1522401","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2025.1522401","pdf_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2025.1522401/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.8199999928474426}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4409557366.pdf"},"referenced_works_count":75,"referenced_works":["https://openalex.org/W27030501","https://openalex.org/W33873439","https://openalex.org/W655815432","https://openalex.org/W1490655572","https://openalex.org/W1972423203","https://openalex.org/W1974261686","https://openalex.org/W1990056753","https://openalex.org/W2104313063","https://openalex.org/W2118200955","https://openalex.org/W2118258530","https://openalex.org/W2127553917","https://openalex.org/W2143043751","https://openalex.org/W2143129697","https://openalex.org/W2146512944","https://openalex.org/W2156483112","https://openalex.org/W2162833766","https://openalex.org/W2166458835","https://openalex.org/W2168967216","https://openalex.org/W2169052701","https://openalex.org/W2179438025","https://openalex.org/W2222589778","https://openalex.org/W2230320310","https://openalex.org/W2554328824","https://openalex.org/W2600746833","https://openalex.org/W2613933396","https://openalex.org/W2698235222","https://openalex.org/W2775056555","https://openalex.org/W2790953952","https://openalex.org/W2793350103","https://openalex.org/W2905517142","https://openalex.org/W2944960456","https://openalex.org/W2948009788","https://openalex.org/W2950200056","https://openalex.org/W2964278775","https://openalex.org/W2981297924","https://openalex.org/W3091810610","https://openalex.org/W3107425599","https://openalex.org/W3125597081","https://openalex.org/W3129000180","https://openalex.org/W3139240712","https://openalex.org/W3154239981","https://openalex.org/W3173521631","https://openalex.org/W3184607363","https://openalex.org/W4200140206","https://openalex.org/W4206188979","https://openalex.org/W4210894727","https://openalex.org/W4220831425","https://openalex.org/W4229038770","https://openalex.org/W4229766132","https://openalex.org/W4281982154","https://openalex.org/W4283371554","https://openalex.org/W4283447010","https://openalex.org/W4285181165","https://openalex.org/W4287378669","https://openalex.org/W4288707390","https://openalex.org/W4301594934","https://openalex.org/W4304014019","https://openalex.org/W4306698125","https://openalex.org/W4306816578","https://openalex.org/W4308322041","https://openalex.org/W4311455437","https://openalex.org/W4311543603","https://openalex.org/W4315632125","https://openalex.org/W4324082543","https://openalex.org/W4365813323","https://openalex.org/W4380880748","https://openalex.org/W4385349297","https://openalex.org/W4385459199","https://openalex.org/W4385856385","https://openalex.org/W4386782410","https://openalex.org/W4387392255","https://openalex.org/W4388522045","https://openalex.org/W4388615780","https://openalex.org/W4392848360","https://openalex.org/W6885086691"],"related_works":["https://openalex.org/W2899096130","https://openalex.org/W3190782215","https://openalex.org/W2902729297","https://openalex.org/W3110500039","https://openalex.org/W4255531208","https://openalex.org/W4396858017","https://openalex.org/W4400165188","https://openalex.org/W4206422705","https://openalex.org/W4320009247","https://openalex.org/W3186872001"],"abstract_inverted_index":{"The":[0,266,283],"incidence":[1],"of":[2,35,58,91,157,275,285],"non-alcoholic":[3,12],"fatty":[4],"liver":[5],"disease":[6,101,143,192,306],"(NAFLD),":[7],"encompassing":[8],"the":[9,18,88,121,154,179,189,257,273],"more":[10,137],"severe":[11],"steatohepatitis":[13],"(NASH),":[14],"is":[15,29,302],"rising":[16],"alongside":[17],"surges":[19],"in":[20,64,141,224,288],"diabetes":[21],"and":[22,56,62,114,165,220,226,231,254,264,308],"obesity.":[23],"Increasing":[24],"evidence":[25],"indicates":[26],"that":[27],"NASH":[28],"responsible":[30],"for":[31,69,100,280,298],"a":[32,41,45,289],"significant":[33],"share":[34],"idiopathic":[36],"hepatocellular":[37],"carcinoma":[38],"(HCC)":[39],"cases,":[40],"fatal":[42],"cancer":[43],"with":[44,87,250],"5-year":[46],"survival":[47,147,212],"rate":[48],"below":[49],"22%.":[50],"Biomarkers":[51],"can":[52],"facilitate":[53],"early":[54,299],"screening":[55],"monitoring":[57],"at-risk":[59],"NAFLD/NASH":[60],"patients":[61],"assist":[63],"identifying":[65,83,276],"potential":[66,172,208,295],"drug":[67,162,173,236,291],"candidates":[68,174,259],"treatment.":[70],"This":[71],"study":[72],"utilized":[73,118],"an":[74],"ensemble":[75],"feature":[76,105,130,196],"selection":[77,106,131,197],"framework":[78],"to":[79,119,135,152,170,243,304],"analyze":[80],"transcriptomic":[81],"data,":[82],"biomarker":[84,155],"genes":[85,123,216],"associated":[86],"stage-wise":[89],"progression":[90,307],"NAFLD-related":[92],"HCC.":[93,282],"Seven":[94],"machine":[95,181],"learning":[96,182],"algorithms":[97],"were":[98,117,133,168,205,241],"assessed":[99],"stage":[102,193],"classification.":[103],"Twelve":[104],"methods":[107,132,271],"including":[108],"correlation-based":[109],"techniques,":[110],"mutual":[111],"information-based":[112],"methods,":[113],"embedded":[115],"techniques":[116],"rank":[120],"top":[122,200],"as":[124,188,207,256],"features,":[125],"through":[126,261],"this":[127,142],"approach,":[128],"multiple":[129,270],"combined":[134],"yield":[136],"robust":[138,278],"features":[139],"important":[140],"progression.":[144],"Cox":[145],"regression-based":[146],"analysis":[148],"was":[149],"carried":[150],"out":[151],"evaluate":[153],"potentiality":[156],"these":[158,176,247,286],"genes.":[159],"Furthermore,":[160],"multiphase":[161,290],"repurposing":[163,292],"strategy":[164,293],"molecular":[166,262],"docking":[167,263],"employed":[169],"identify":[171],"against":[175,246],"biomarkers.":[177],"Among":[178],"seven":[180],"models":[183],"initially":[184],"evaluated,":[185],"DISCR":[186],"resulted":[187],"most":[190],"accurate":[191],"classifier.":[194],"Ensemble":[195],"identified":[198],"ten":[199],"genes,":[201,249],"among":[202],"which":[203,301],"eight":[204],"recognized":[206],"biomarkers":[209,279,287],"based":[210],"on":[211],"analysis.":[213],"These":[214],"include":[215],"ABAT,":[217],"ABCB11,":[218],"MBTPS1,":[219],"ZFP1":[221],"mostly":[222],"involved":[223],"alanine":[225],"glutamate":[227],"metabolism,":[228,230],"butanoate":[229],"ER":[232],"protein":[233],"processing.":[234],"Through":[235],"repurposing,":[237],"81":[238],"candidate":[239],"drugs":[240],"found":[242],"be":[244],"effective":[245],"markers":[248],"Diosmin,":[251],"Esculin,":[252],"Lapatinib,":[253],"Phenelzine":[255],"best":[258],"screened":[260],"MMGBSA.":[265],"consensus":[267],"derived":[268],"from":[269],"enhances":[272],"accuracy":[274],"relevant":[277],"NAFLD-associated":[281],"use":[284],"highlights":[294],"therapeutic":[296],"options":[297],"intervention,":[300],"essential":[303],"stop":[305],"improve":[309],"outcomes.":[310]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
