{"id":"https://openalex.org/W4405456514","doi":"https://doi.org/10.3389/fbinf.2024.1495417","title":"Completing a molecular timetree of primates","display_name":"Completing a molecular timetree of primates","publication_year":2024,"publication_date":"2024-12-16","ids":{"openalex":"https://openalex.org/W4405456514","doi":"https://doi.org/10.3389/fbinf.2024.1495417","pmid":"https://pubmed.ncbi.nlm.nih.gov/39737248"},"language":"en","primary_location":{"id":"doi:10.3389/fbinf.2024.1495417","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2024.1495417","pdf_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2024.1495417/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2024.1495417/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091689845","display_name":"Jack M. Craig","orcid":"https://orcid.org/0000-0003-0590-5944"},"institutions":[{"id":"https://openalex.org/I84392919","display_name":"Temple University","ror":"https://ror.org/00kx1jb78","country_code":"US","type":"education","lineage":["https://openalex.org/I84392919"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jack M. Craig","raw_affiliation_strings":["Center for Biodiversity, Temple University, Philadelphia, PA, United States","Department of Biology, Temple University, Philadelphia, PA, United States","Institute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, PA, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Biodiversity, Temple University, Philadelphia, PA, United States","institution_ids":["https://openalex.org/I84392919"]},{"raw_affiliation_string":"Department of Biology, Temple University, Philadelphia, PA, United States","institution_ids":["https://openalex.org/I84392919"]},{"raw_affiliation_string":"Institute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, PA, United States","institution_ids":["https://openalex.org/I84392919"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056603005","display_name":"S. Blair Hedges","orcid":"https://orcid.org/0000-0002-0652-2411"},"institutions":[{"id":"https://openalex.org/I84392919","display_name":"Temple University","ror":"https://ror.org/00kx1jb78","country_code":"US","type":"education","lineage":["https://openalex.org/I84392919"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"S. Blair Hedges","raw_affiliation_strings":["Center for Biodiversity, Temple University, Philadelphia, PA, United States","Department of Biology, Temple University, Philadelphia, PA, United States","Institute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, PA, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Biodiversity, Temple University, Philadelphia, PA, United States","institution_ids":["https://openalex.org/I84392919"]},{"raw_affiliation_string":"Department of Biology, Temple University, Philadelphia, PA, United States","institution_ids":["https://openalex.org/I84392919"]},{"raw_affiliation_string":"Institute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, PA, United States","institution_ids":["https://openalex.org/I84392919"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100680948","display_name":"Sudhir Kumar","orcid":"https://orcid.org/0000-0002-9918-8212"},"institutions":[{"id":"https://openalex.org/I84392919","display_name":"Temple University","ror":"https://ror.org/00kx1jb78","country_code":"US","type":"education","lineage":["https://openalex.org/I84392919"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Sudhir Kumar","raw_affiliation_strings":["Center for Biodiversity, Temple University, Philadelphia, PA, United States","Department of Biology, Temple University, Philadelphia, PA, United States","Institute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, PA, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Biodiversity, Temple University, Philadelphia, PA, United States","institution_ids":["https://openalex.org/I84392919"]},{"raw_affiliation_string":"Department of Biology, Temple University, Philadelphia, PA, United States","institution_ids":["https://openalex.org/I84392919"]},{"raw_affiliation_string":"Institute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, PA, United States","institution_ids":["https://openalex.org/I84392919"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5100680948"],"corresponding_institution_ids":["https://openalex.org/I84392919"],"apc_list":{"value":2550,"currency":"CHF","value_usd":3077},"apc_paid":{"value":2550,"currency":"CHF","value_usd":3077},"fwci":1.2916,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.80065998,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"4","issue":null,"first_page":"1495417","last_page":"1495417"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9835000038146973,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9814000129699707,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.40743955969810486},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.39924630522727966},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.3737660050392151},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3676205277442932}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.40743955969810486},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.39924630522727966},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.3737660050392151},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3676205277442932}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3389/fbinf.2024.1495417","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2024.1495417","pdf_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2024.1495417/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39737248","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39737248","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:11683086","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11683086","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11683086/pdf/fbinf-04-1495417.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Front Bioinform","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:265e3828eb144a1daa875697be2bb6c5","is_oa":true,"landing_page_url":"https://doaj.org/article/265e3828eb144a1daa875697be2bb6c5","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Bioinformatics, Vol 4 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3389/fbinf.2024.1495417","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2024.1495417","pdf_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2024.1495417/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1434948336","display_name":"Methods for Evolutionary Genomics Analysis","funder_award_id":"1r35gm139540-01","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7627260611","display_name":"Bridging fields and expanding research opportunities with the timescale of life","funder_award_id":"2318917","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8358068187","display_name":null,"funder_award_id":"R35 GM139540","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4405456514.pdf","grobid_xml":"https://content.openalex.org/works/W4405456514.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W561774432","https://openalex.org/W1989350663","https://openalex.org/W1992566665","https://openalex.org/W2002947503","https://openalex.org/W2058894952","https://openalex.org/W2095638966","https://openalex.org/W2099540110","https://openalex.org/W2117260150","https://openalex.org/W2120575449","https://openalex.org/W2154014610","https://openalex.org/W2269635123","https://openalex.org/W2277521912","https://openalex.org/W2308144904","https://openalex.org/W2529145379","https://openalex.org/W2587748669","https://openalex.org/W2739096724","https://openalex.org/W2947175105","https://openalex.org/W2949972517","https://openalex.org/W2952612634","https://openalex.org/W2963837676","https://openalex.org/W2967561254","https://openalex.org/W2972518841","https://openalex.org/W2991673925","https://openalex.org/W3048090444","https://openalex.org/W3178022117","https://openalex.org/W3199805689","https://openalex.org/W4213309264","https://openalex.org/W4220931536","https://openalex.org/W4251751280","https://openalex.org/W4255659575","https://openalex.org/W4281962669","https://openalex.org/W4290075586","https://openalex.org/W4323318402","https://openalex.org/W4386369531","https://openalex.org/W4389132733","https://openalex.org/W4389788119","https://openalex.org/W4400882682"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W4391375266","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2061542922"],"abstract_inverted_index":{"Primates,":[0],"consisting":[1,94],"of":[2,36,52,77,95,105,110,120,124,132,158,190],"apes,":[3],"monkeys,":[4],"tarsiers,":[5],"and":[6,13,108],"lemurs,":[7],"are":[8,87],"among":[9],"the":[10,27,30,41,67,130,181,187],"most":[11],"charismatic":[12],"well-studied":[14],"animals":[15],"on":[16],"Earth,":[17],"yet":[18],"there":[19],"is":[20,184],"no":[21],"taxonomically":[22],"complete":[23],"molecular":[24,63,85,118],"timetree":[25,76,119],"for":[26,83,99,129],"group.":[28],"Combining":[29],"latest":[31],"large-scale":[32,175],"genomic":[33],"primate":[34,133,188],"phylogeny":[35,51],"205":[37],"recognized":[38],"species":[39,58,82,136],"with":[40,56,173,193],"400-species":[42],"literature":[43,97],"consensus":[44],"tree":[45,189],"available":[46],"from":[47,112],"TimeTree.org":[48],"yields":[49],"a":[50,75,91,96,140],"just":[53],"405":[54],"primates,":[55,79],"50":[57],"still":[59],"missing":[60],"despite":[61],"having":[62],"sequence":[64],"data":[65,86],"in":[66,143,162,196],"NCBI":[68],"GenBank.":[69],"In":[70],"this":[71],"study,":[72],"we":[73,178],"assemble":[74],"455":[78],"incorporating":[80],"every":[81],"which":[84,144,163],"available.":[88],"We":[89],"use":[90],"synthetic":[92],"approach":[93],"review":[98],"published":[100],"timetrees,":[101],"de":[102],"novo":[103],"dating":[104],"untimed":[106],"trees,":[107],"assembly":[109],"timetrees":[111],"novel":[113],"alignments.":[114],"The":[115],"resulting":[116],"near-complete":[117],"primates":[121],"allows":[122],"testing":[123],"two":[125],"long-standing":[126],"alternate":[127],"hypotheses":[128],"origins":[131],"biodiversity:":[134],"whether":[135,152],"richness":[137],"arises":[138],"at":[139],"constant":[141],"rate,":[142],"case":[145],"older":[146],"clades":[147,154,167],"have":[148],"more":[149,170],"species,":[150],"or":[151],"some":[153,194],"exhibit":[155],"faster":[156],"rates":[157],"speciation":[159,182],"than":[160],"others,":[161],"case,":[164],"these":[165],"fast":[166],"would":[168],"be":[169],"species-rich.":[171],"Consistent":[172],"other":[174],"macroevolutionary":[176],"analyses,":[177],"found":[179],"that":[180],"rate":[183],"similar":[185],"across":[186],"life,":[191],"albeit":[192],"variation":[195],"smaller":[197],"clades.":[198]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":4}],"updated_date":"2026-08-27T14:10:00.468798","created_date":"2025-10-10T00:00:00"}
