{"id":"https://openalex.org/W4403199817","doi":"https://doi.org/10.3389/fbinf.2024.1464197","title":"In silico PCR analysis: a comprehensive bioinformatics tool for enhancing nucleic acid amplification assays","display_name":"In silico PCR analysis: a comprehensive bioinformatics tool for enhancing nucleic acid amplification assays","publication_year":2024,"publication_date":"2024-10-07","ids":{"openalex":"https://openalex.org/W4403199817","doi":"https://doi.org/10.3389/fbinf.2024.1464197","pmid":"https://pubmed.ncbi.nlm.nih.gov/39435190"},"language":"en","primary_location":{"id":"doi:10.3389/fbinf.2024.1464197","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2024.1464197","pdf_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2024.1464197/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2024.1464197/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040963956","display_name":"Ruslan Kalendar","orcid":"https://orcid.org/0000-0003-3986-2460"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I4210122519","display_name":"Biocenter Finland","ror":"https://ror.org/03aay6c48","country_code":"FI","type":"facility","lineage":["https://openalex.org/I4210122519"]},{"id":"https://openalex.org/I60559429","display_name":"Nazarbayev University","ror":"https://ror.org/052bx8q98","country_code":"KZ","type":"education","lineage":["https://openalex.org/I60559429"]}],"countries":["FI","KZ"],"is_corresponding":true,"raw_author_name":"Ruslan Kalendar","raw_affiliation_strings":["Helsinki Institute of Life Science (HiLIFE), University of Helsinki, Biocentre 3, Helsinki, Finland","National Laboratory Astana, Nazarbayev University, Astana, Kazakhstan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Helsinki Institute of Life Science (HiLIFE), University of Helsinki, Biocentre 3, Helsinki, Finland","institution_ids":["https://openalex.org/I4210122519","https://openalex.org/I133731052"]},{"raw_affiliation_string":"National Laboratory Astana, Nazarbayev University, Astana, Kazakhstan","institution_ids":["https://openalex.org/I60559429"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018146292","display_name":"Alexandr Shevtsov","orcid":"https://orcid.org/0000-0002-0307-1053"},"institutions":[{"id":"https://openalex.org/I4210101002","display_name":"National Center for Biotechnology","ror":"https://ror.org/00xhcc696","country_code":"KZ","type":"facility","lineage":["https://openalex.org/I4210101002"]}],"countries":["KZ"],"is_corresponding":false,"raw_author_name":"Alexandr Shevtsov","raw_affiliation_strings":["National Center for Biotechnology, Astana, Kazakhstan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology, Astana, Kazakhstan","institution_ids":["https://openalex.org/I4210101002"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003517480","display_name":"Zhenis Otarbay","orcid":"https://orcid.org/0000-0003-4111-0719"},"institutions":[{"id":"https://openalex.org/I4210141757","display_name":"Astana Medical University","ror":"https://ror.org/038mavt60","country_code":"KZ","type":"education","lineage":["https://openalex.org/I4210141757"]}],"countries":["KZ"],"is_corresponding":false,"raw_author_name":"Zhenis Otarbay","raw_affiliation_strings":["Astana IT University, Astana, Kazakhstan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Astana IT University, Astana, Kazakhstan","institution_ids":["https://openalex.org/I4210141757"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006951101","display_name":"Aisulu Ismailova","orcid":"https://orcid.org/0000-0002-8958-1846"},"institutions":[{"id":"https://openalex.org/I4210124329","display_name":"S.Seifullin Kazakh Agro Technical University","ror":"https://ror.org/024etxn40","country_code":"KZ","type":"education","lineage":["https://openalex.org/I4210124329"]}],"countries":["KZ"],"is_corresponding":false,"raw_author_name":"Aisulu Ismailova","raw_affiliation_strings":["Department Information Systems, S. Seifullin Kazakh Agro Technical Research University, Astana, Kazakhstan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department Information Systems, S. Seifullin Kazakh Agro Technical Research University, Astana, Kazakhstan","institution_ids":["https://openalex.org/I4210124329"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5040963956"],"corresponding_institution_ids":["https://openalex.org/I133731052","https://openalex.org/I4210122519","https://openalex.org/I60559429"],"apc_list":{"value":1900,"currency":"USD","value_usd":1900},"apc_paid":{"value":1900,"currency":"USD","value_usd":1900},"fwci":3.7633,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.94159513,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"4","issue":null,"first_page":"1464197","last_page":"1464197"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.8460404872894287},{"id":"https://openalex.org/keywords/nucleic-acid","display_name":"Nucleic acid","score":0.6512181758880615},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6296275854110718},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3678702116012573},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3587265610694885},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3466726243495941},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.23134908080101013},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11169356107711792}],"concepts":[{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.8460404872894287},{"id":"https://openalex.org/C24107716","wikidata":"https://www.wikidata.org/wiki/Q123619","display_name":"Nucleic acid","level":2,"score":0.6512181758880615},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6296275854110718},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3678702116012573},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3587265610694885},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3466726243495941},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.23134908080101013},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11169356107711792}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3389/fbinf.2024.1464197","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2024.1464197","pdf_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2024.1464197/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39435190","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39435190","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11491563","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11491563","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11491563/pdf/fbinf-04-1464197.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Front Bioinform","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:2f567da2d2a44f0db2b06a8f521ae89d","is_oa":true,"landing_page_url":"https://doaj.org/article/2f567da2d2a44f0db2b06a8f521ae89d","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Bioinformatics, Vol 4 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3389/fbinf.2024.1464197","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2024.1464197","pdf_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2024.1464197/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322726","display_name":"Ministry of Education and Science of the Republic of Kazakhstan","ror":"https://ror.org/03pj6ge82"},{"id":"https://openalex.org/F4320327695","display_name":"Nazarbayev University","ror":"https://ror.org/052bx8q98"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4403199817.pdf","grobid_xml":"https://content.openalex.org/works/W4403199817.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W1970663985","https://openalex.org/W1986373859","https://openalex.org/W2019151512","https://openalex.org/W2032019813","https://openalex.org/W2038929178","https://openalex.org/W2077485115","https://openalex.org/W2081787472","https://openalex.org/W2094288890","https://openalex.org/W2095018677","https://openalex.org/W2104287544","https://openalex.org/W2105275554","https://openalex.org/W2133002406","https://openalex.org/W2149681483","https://openalex.org/W2162238964","https://openalex.org/W2164509763","https://openalex.org/W2171114940","https://openalex.org/W2613127536","https://openalex.org/W2944021648","https://openalex.org/W2950352950","https://openalex.org/W3000237367","https://openalex.org/W3018942261","https://openalex.org/W3173568073","https://openalex.org/W4210252407","https://openalex.org/W4214670042","https://openalex.org/W4294281576","https://openalex.org/W4309999671","https://openalex.org/W4366985991","https://openalex.org/W4388929150","https://openalex.org/W4393257390"],"related_works":["https://openalex.org/W2003194288","https://openalex.org/W2513589746","https://openalex.org/W2153919606","https://openalex.org/W2213189664","https://openalex.org/W2074002899","https://openalex.org/W2062254828","https://openalex.org/W4237480606","https://openalex.org/W2936968863","https://openalex.org/W1971792277","https://openalex.org/W2084707189"],"abstract_inverted_index":{"PCR":[0],"analyses":[1],"of":[2,21,46],"both":[3],"linear":[4],"and":[5,36],"circular":[6],"DNA":[7],"templates,":[8],"including":[9],"bisulfited":[10],"treatment":[11],"DNA,":[12],"enabling":[13],"multiple":[14],"primer":[15],"or":[16],"probe":[17],"searches":[18],"within":[19],"databases":[20],"varying":[22],"scales":[23],"alongside":[24],"advanced":[25],"search":[26],"functionalities.":[27],"This":[28],"tool":[29],"is":[30,37],"suitable":[31],"for":[32,39],"processing":[33],"batch":[34],"files":[35],"essential":[38],"automation":[40],"when":[41],"working":[42],"with":[43],"large":[44],"amounts":[45],"data.":[47]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":11},{"year":2024,"cited_by_count":2}],"updated_date":"2026-04-28T14:05:53.105641","created_date":"2025-10-10T00:00:00"}
