{"id":"https://openalex.org/W4402323161","doi":"https://doi.org/10.3389/fbinf.2024.1463750","title":"Molecular docking and molecular dynamic simulation studies to identify potential terpenes against Internalin A protein of Listeria monocytogenes","display_name":"Molecular docking and molecular dynamic simulation studies to identify potential terpenes against Internalin A protein of Listeria monocytogenes","publication_year":2024,"publication_date":"2024-09-06","ids":{"openalex":"https://openalex.org/W4402323161","doi":"https://doi.org/10.3389/fbinf.2024.1463750","pmid":"https://pubmed.ncbi.nlm.nih.gov/39309295"},"language":"en","primary_location":{"id":"doi:10.3389/fbinf.2024.1463750","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2024.1463750","pdf_url":"https://public-pages-files-2025.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2024.1463750/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://public-pages-files-2025.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2024.1463750/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066369614","display_name":"K Deepasree","orcid":null},"institutions":[{"id":"https://openalex.org/I876193797","display_name":"Vellore Institute of Technology University","ror":"https://ror.org/00qzypv28","country_code":"IN","type":"education","lineage":["https://openalex.org/I876193797"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Deepasree K","raw_affiliation_strings":["Department of Integrative Biology, School of Bio Sciences and Technology, Vellore Institute of Technology, Vellore, Tamil Nadu, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Integrative Biology, School of Bio Sciences and Technology, Vellore Institute of Technology, Vellore, Tamil Nadu, India","institution_ids":["https://openalex.org/I876193797"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016444065","display_name":"Subhashree Venugopal","orcid":"https://orcid.org/0000-0001-7713-5737"},"institutions":[{"id":"https://openalex.org/I876193797","display_name":"Vellore Institute of Technology University","ror":"https://ror.org/00qzypv28","country_code":"IN","type":"education","lineage":["https://openalex.org/I876193797"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Subhashree Venugopal","raw_affiliation_strings":["Department of Integrative Biology, School of Bio Sciences and Technology, Vellore Institute of Technology, Vellore, Tamil Nadu, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Integrative Biology, School of Bio Sciences and Technology, Vellore Institute of Technology, Vellore, Tamil Nadu, India","institution_ids":["https://openalex.org/I876193797"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5066369614"],"corresponding_institution_ids":["https://openalex.org/I876193797"],"apc_list":{"value":1900,"currency":"USD","value_usd":1900},"apc_paid":{"value":1900,"currency":"USD","value_usd":1900},"fwci":2.1958,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.86746303,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":98},"biblio":{"volume":"4","issue":null,"first_page":"1463750","last_page":"1463750"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10900","display_name":"Listeria monocytogenes in Food Safety","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1305","display_name":"Biotechnology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10900","display_name":"Listeria monocytogenes in Food Safety","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1305","display_name":"Biotechnology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10225","display_name":"Essential Oils and Antimicrobial Activity","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9904000163078308,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/listeria-monocytogenes","display_name":"Listeria monocytogenes","score":0.7510521411895752},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.6436631679534912},{"id":"https://openalex.org/keywords/terpene","display_name":"Terpene","score":0.5336053967475891},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4360504448413849},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3419186770915985},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.16802382469177246},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.16643181443214417},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.1503010392189026},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.13798990845680237},{"id":"https://openalex.org/keywords/veterinary-medicine","display_name":"Veterinary medicine","score":0.059813082218170166}],"concepts":[{"id":"https://openalex.org/C2781350384","wikidata":"https://www.wikidata.org/wiki/Q292015","display_name":"Listeria monocytogenes","level":3,"score":0.7510521411895752},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.6436631679534912},{"id":"https://openalex.org/C44937612","wikidata":"https://www.wikidata.org/wiki/Q212364","display_name":"Terpene","level":2,"score":0.5336053967475891},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4360504448413849},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3419186770915985},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16802382469177246},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.16643181443214417},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.1503010392189026},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.13798990845680237},{"id":"https://openalex.org/C42972112","wikidata":"https://www.wikidata.org/wiki/Q170201","display_name":"Veterinary medicine","level":1,"score":0.059813082218170166}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3389/fbinf.2024.1463750","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2024.1463750","pdf_url":"https://public-pages-files-2025.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2024.1463750/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39309295","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39309295","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11412924","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11412924","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11412924/pdf/fbinf-04-1463750.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Front Bioinform","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:6770df425d014b63856b39f4405f3f35","is_oa":true,"landing_page_url":"https://doaj.org/article/6770df425d014b63856b39f4405f3f35","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Bioinformatics, Vol 4 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3389/fbinf.2024.1463750","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2024.1463750","pdf_url":"https://public-pages-files-2025.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2024.1463750/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322838","display_name":"VIT University","ror":"https://ror.org/00qzypv28"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4402323161.pdf","grobid_xml":"https://content.openalex.org/works/W4402323161.grobid-xml"},"referenced_works_count":82,"referenced_works":["https://openalex.org/W1272784366","https://openalex.org/W1483160471","https://openalex.org/W1685046081","https://openalex.org/W1966343877","https://openalex.org/W1989056446","https://openalex.org/W1992375315","https://openalex.org/W1997872815","https://openalex.org/W2011601475","https://openalex.org/W2014054304","https://openalex.org/W2014858249","https://openalex.org/W2028046413","https://openalex.org/W2035266068","https://openalex.org/W2048309867","https://openalex.org/W2052038479","https://openalex.org/W2062105576","https://openalex.org/W2073942813","https://openalex.org/W2074473216","https://openalex.org/W2084532636","https://openalex.org/W2100947872","https://openalex.org/W2105668062","https://openalex.org/W2107957830","https://openalex.org/W2127029141","https://openalex.org/W2130479394","https://openalex.org/W2134967712","https://openalex.org/W2138864786","https://openalex.org/W2146462263","https://openalex.org/W2160871805","https://openalex.org/W2169678694","https://openalex.org/W2175688729","https://openalex.org/W2285239529","https://openalex.org/W2290314242","https://openalex.org/W2379628571","https://openalex.org/W2472089745","https://openalex.org/W2506500964","https://openalex.org/W2510150117","https://openalex.org/W2568617656","https://openalex.org/W2606142185","https://openalex.org/W2612358541","https://openalex.org/W2767446403","https://openalex.org/W2794597140","https://openalex.org/W2901244515","https://openalex.org/W2902225381","https://openalex.org/W2910958535","https://openalex.org/W2914010069","https://openalex.org/W2967088542","https://openalex.org/W2967756348","https://openalex.org/W2984268065","https://openalex.org/W2996835116","https://openalex.org/W3002370709","https://openalex.org/W3017633633","https://openalex.org/W3038370170","https://openalex.org/W3044906678","https://openalex.org/W3092126653","https://openalex.org/W3092962005","https://openalex.org/W3103608538","https://openalex.org/W3114324387","https://openalex.org/W3121112951","https://openalex.org/W3123923104","https://openalex.org/W3133282324","https://openalex.org/W3159197762","https://openalex.org/W3162657036","https://openalex.org/W3165573165","https://openalex.org/W3191852652","https://openalex.org/W3202287440","https://openalex.org/W3204747052","https://openalex.org/W3209092417","https://openalex.org/W3211248101","https://openalex.org/W4200296538","https://openalex.org/W4200468895","https://openalex.org/W4214768268","https://openalex.org/W4247610167","https://openalex.org/W4292259388","https://openalex.org/W4367301620","https://openalex.org/W4386134005","https://openalex.org/W4387765156","https://openalex.org/W4391065746","https://openalex.org/W6637348786","https://openalex.org/W6696780998","https://openalex.org/W6749795856","https://openalex.org/W6802158426","https://openalex.org/W6969002156","https://openalex.org/W7014980881"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W185342975","https://openalex.org/W2082860237","https://openalex.org/W2730826456","https://openalex.org/W119215873","https://openalex.org/W2119695867","https://openalex.org/W1599991822","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875"],"abstract_inverted_index":{"Introduction:":[0],",":[1],"the":[2,32,79,82],"lives":[3],"of":[4,21,63,84],"immunocompromised":[5],"individuals":[6],"have":[7],"been":[8],"at":[9],"risk.":[10],"Objectives":[11],"and":[12,28,43,53],"Methods:":[13],"approaches.":[14],"Results:":[15],"The":[16,36],"best":[17],"binding":[18],"affinity":[19],"value":[20],"-9.5":[22],"kcal/mol":[23],"was":[24],"observed":[25],"for":[26,60],"Bipinnatin":[27],"Epispongiadiol":[29,68],"according":[30],"to":[31,41,69,81],"molecular":[33],"docking":[34],"studies.":[35],"compounds":[37],"were":[38],"further":[39],"subjected":[40],"ADMET":[42],"biological":[44],"activity":[45],"estimation":[46],"which":[47],"confirmed":[48],"their":[49],"good":[50],"pharmacokinetic":[51],"properties":[52],"antibacterial":[54],"activity.":[55],"Discussion:":[56],"Molecular":[57],"dynamic":[58],"simulation":[59],"a":[61,71],"timescale":[62],"100":[64],"ns":[65],"finally":[66],"revealed":[67],"be":[70],"promising":[72],"drug-like":[73],"compound":[74],"that":[75],"could":[76],"possibly":[77],"pave":[78],"way":[80],"treatment":[83],"this":[85],"disease.":[86]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5}],"updated_date":"2026-04-28T14:05:53.105641","created_date":"2024-09-07T00:00:00"}
