{"id":"https://openalex.org/W4402933381","doi":"https://doi.org/10.3389/fbinf.2024.1435733","title":"SciJava Ops: an improved algorithms framework for Fiji and beyond","display_name":"SciJava Ops: an improved algorithms framework for Fiji and beyond","publication_year":2024,"publication_date":"2024-09-27","ids":{"openalex":"https://openalex.org/W4402933381","doi":"https://doi.org/10.3389/fbinf.2024.1435733","pmid":"https://pubmed.ncbi.nlm.nih.gov/39399098"},"language":"en","primary_location":{"id":"doi:10.3389/fbinf.2024.1435733","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2024.1435733","pdf_url":"https://public-pages-files-2025.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2024.1435733/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://public-pages-files-2025.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2024.1435733/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054264275","display_name":"Gabriel J. Selzer","orcid":null},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gabriel J. Selzer","raw_affiliation_strings":["Center for Quantitative Cell Imaging, University of Wisconsin-Madison, Madison, WI, United States"],"affiliations":[{"raw_affiliation_string":"Center for Quantitative Cell Imaging, University of Wisconsin-Madison, Madison, WI, United States","institution_ids":["https://openalex.org/I135310074"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078540488","display_name":"Curtis Rueden","orcid":"https://orcid.org/0000-0001-7055-6707"},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Curtis T. Rueden","raw_affiliation_strings":["Center for Quantitative Cell Imaging, University of Wisconsin-Madison, Madison, WI, United States"],"affiliations":[{"raw_affiliation_string":"Center for Quantitative Cell Imaging, University of Wisconsin-Madison, Madison, WI, United States","institution_ids":["https://openalex.org/I135310074"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032461862","display_name":"Mark Hiner","orcid":null},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mark C. Hiner","raw_affiliation_strings":["Center for Quantitative Cell Imaging, University of Wisconsin-Madison, Madison, WI, United States"],"affiliations":[{"raw_affiliation_string":"Center for Quantitative Cell Imaging, University of Wisconsin-Madison, Madison, WI, United States","institution_ids":["https://openalex.org/I135310074"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064048312","display_name":"Edward L. Evans","orcid":"https://orcid.org/0000-0003-0278-4227"},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]},{"id":"https://openalex.org/I29680605","display_name":"Morgridge Institute for Research","ror":"https://ror.org/05cb4rb43","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I135310074","https://openalex.org/I29680605"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Edward L. Evans","raw_affiliation_strings":["Center for Quantitative Cell Imaging, University of Wisconsin-Madison, Madison, WI, United States","Morgridge Institute for Research, Madison, WI, United States"],"affiliations":[{"raw_affiliation_string":"Center for Quantitative Cell Imaging, University of Wisconsin-Madison, Madison, WI, United States","institution_ids":["https://openalex.org/I135310074"]},{"raw_affiliation_string":"Morgridge Institute for Research, Madison, WI, United States","institution_ids":["https://openalex.org/I29680605"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111839356","display_name":"David Kolb","orcid":null},"institutions":[{"id":"https://openalex.org/I189712700","display_name":"University of Konstanz","ror":"https://ror.org/0546hnb39","country_code":"DE","type":"education","lineage":["https://openalex.org/I189712700"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"David Kolb","raw_affiliation_strings":["Department of Computer and Information Science, University of Konstanz, Konstanz, Germany","KNIME GmbH, Konstanz, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Science, University of Konstanz, Konstanz, Germany","institution_ids":["https://openalex.org/I189712700"]},{"raw_affiliation_string":"KNIME GmbH, Konstanz, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065188202","display_name":"Marcel Wiedenmann","orcid":null},"institutions":[{"id":"https://openalex.org/I189712700","display_name":"University of Konstanz","ror":"https://ror.org/0546hnb39","country_code":"DE","type":"education","lineage":["https://openalex.org/I189712700"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Marcel Wiedenmann","raw_affiliation_strings":["Department of Computer and Information Science, University of Konstanz, Konstanz, Germany","KNIME GmbH, Konstanz, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Science, University of Konstanz, Konstanz, Germany","institution_ids":["https://openalex.org/I189712700"]},{"raw_affiliation_string":"KNIME GmbH, Konstanz, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080638769","display_name":"Christian Birkhold","orcid":null},"institutions":[{"id":"https://openalex.org/I189712700","display_name":"University of Konstanz","ror":"https://ror.org/0546hnb39","country_code":"DE","type":"education","lineage":["https://openalex.org/I189712700"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Christian Birkhold","raw_affiliation_strings":["Department of Computer and Information Science, University of Konstanz, Konstanz, Germany","KNIME GmbH, Konstanz, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Science, University of Konstanz, Konstanz, Germany","institution_ids":["https://openalex.org/I189712700"]},{"raw_affiliation_string":"KNIME GmbH, Konstanz, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031489442","display_name":"Tim-Oliver Buchholz","orcid":"https://orcid.org/0000-0001-6953-8915"},"institutions":[{"id":"https://openalex.org/I4210159854","display_name":"Max Planck Institute of Molecular Cell Biology and Genetics","ror":"https://ror.org/05b8d3w18","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210159854"]},{"id":"https://openalex.org/I860889466","display_name":"Friedrich Miescher Institute","ror":"https://ror.org/01bmjkv45","country_code":"CH","type":"facility","lineage":["https://openalex.org/I860889466"]}],"countries":["CH","DE"],"is_corresponding":false,"raw_author_name":"Tim-Oliver Buchholz","raw_affiliation_strings":["Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland","Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany"],"affiliations":[{"raw_affiliation_string":"Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland","institution_ids":["https://openalex.org/I860889466"]},{"raw_affiliation_string":"Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany","institution_ids":["https://openalex.org/I4210159854"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059627454","display_name":"Stefan Helfrich","orcid":"https://orcid.org/0000-0003-3549-8649"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Stefan Helfrich","raw_affiliation_strings":["KNIME GmbH, Konstanz, Germany"],"affiliations":[{"raw_affiliation_string":"KNIME GmbH, Konstanz, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018755207","display_name":"B. Northan","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Brian Northan","raw_affiliation_strings":["True North Intelligent Algorithms, Guilderland, NY, United States"],"affiliations":[{"raw_affiliation_string":"True North Intelligent Algorithms, Guilderland, NY, United States","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102674784","display_name":"Alison Walter","orcid":null},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]},{"id":"https://openalex.org/I29680605","display_name":"Morgridge Institute for Research","ror":"https://ror.org/05cb4rb43","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I135310074","https://openalex.org/I29680605"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alison Walter","raw_affiliation_strings":["Center for Quantitative Cell Imaging, University of Wisconsin-Madison, Madison, WI, United States","KNIME GmbH, Konstanz, Germany","Morgridge Institute for Research, Madison, WI, United States"],"affiliations":[{"raw_affiliation_string":"Center for Quantitative Cell Imaging, University of Wisconsin-Madison, Madison, WI, United States","institution_ids":["https://openalex.org/I135310074"]},{"raw_affiliation_string":"KNIME GmbH, Konstanz, Germany","institution_ids":[]},{"raw_affiliation_string":"Morgridge Institute for Research, Madison, WI, United States","institution_ids":["https://openalex.org/I29680605"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050085853","display_name":"Johannes Schindelin","orcid":null},"institutions":[{"id":"https://openalex.org/I1290206253","display_name":"Microsoft (United States)","ror":"https://ror.org/00d0nc645","country_code":"US","type":"company","lineage":["https://openalex.org/I1290206253"]},{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]},{"id":"https://openalex.org/I29680605","display_name":"Morgridge Institute for Research","ror":"https://ror.org/05cb4rb43","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I135310074","https://openalex.org/I29680605"]},{"id":"https://openalex.org/I4210159854","display_name":"Max Planck Institute of Molecular Cell Biology and Genetics","ror":"https://ror.org/05b8d3w18","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210159854"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Johannes Schindelin","raw_affiliation_strings":["Center for Quantitative Cell Imaging, University of Wisconsin-Madison, Madison, WI, United States","Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany","Microsoft Corporation, Redmond, WA, United States","Morgridge Institute for Research, Madison, WI, United States"],"affiliations":[{"raw_affiliation_string":"Center for Quantitative Cell Imaging, University of Wisconsin-Madison, Madison, WI, United States","institution_ids":["https://openalex.org/I135310074"]},{"raw_affiliation_string":"Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany","institution_ids":["https://openalex.org/I4210159854"]},{"raw_affiliation_string":"Microsoft Corporation, Redmond, WA, United States","institution_ids":["https://openalex.org/I1290206253"]},{"raw_affiliation_string":"Morgridge Institute for Research, Madison, WI, United States","institution_ids":["https://openalex.org/I29680605"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081122949","display_name":"Tobias Pietzsch","orcid":"https://orcid.org/0000-0002-9477-3957"},"institutions":[{"id":"https://openalex.org/I4210159854","display_name":"Max Planck Institute of Molecular Cell Biology and Genetics","ror":"https://ror.org/05b8d3w18","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210159854"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Tobias Pietzsch","raw_affiliation_strings":["Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany"],"affiliations":[{"raw_affiliation_string":"Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany","institution_ids":["https://openalex.org/I4210159854"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024381551","display_name":"Stephan Saalfeld","orcid":"https://orcid.org/0000-0002-4106-1761"},"institutions":[{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]},{"id":"https://openalex.org/I195573530","display_name":"Janelia Research Campus","ror":"https://ror.org/013sk6x84","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410","https://openalex.org/I195573530"]},{"id":"https://openalex.org/I4210159854","display_name":"Max Planck Institute of Molecular Cell Biology and Genetics","ror":"https://ror.org/05b8d3w18","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210159854"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Stephan Saalfeld","raw_affiliation_strings":["Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, United States","Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany"],"affiliations":[{"raw_affiliation_string":"Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, United States","institution_ids":["https://openalex.org/I195573530","https://openalex.org/I1344073410"]},{"raw_affiliation_string":"Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany","institution_ids":["https://openalex.org/I4210159854"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035270195","display_name":"Michael R. Berthold","orcid":"https://orcid.org/0000-0001-9095-3283"},"institutions":[{"id":"https://openalex.org/I189712700","display_name":"University of Konstanz","ror":"https://ror.org/0546hnb39","country_code":"DE","type":"education","lineage":["https://openalex.org/I189712700"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Michael R. Berthold","raw_affiliation_strings":["Department of Computer and Information Science, University of Konstanz, Konstanz, Germany","KNIME GmbH, Konstanz, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Science, University of Konstanz, Konstanz, Germany","institution_ids":["https://openalex.org/I189712700"]},{"raw_affiliation_string":"KNIME GmbH, Konstanz, Germany","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010413374","display_name":"Kevin W. Eliceiri","orcid":"https://orcid.org/0000-0001-8678-670X"},"institutions":[{"id":"https://openalex.org/I135310074","display_name":"University of Wisconsin\u2013Madison","ror":"https://ror.org/01y2jtd41","country_code":"US","type":"education","lineage":["https://openalex.org/I135310074"]},{"id":"https://openalex.org/I29680605","display_name":"Morgridge Institute for Research","ror":"https://ror.org/05cb4rb43","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I135310074","https://openalex.org/I29680605"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Kevin W. Eliceiri","raw_affiliation_strings":["Center for Quantitative Cell Imaging, University of Wisconsin-Madison, Madison, WI, United States","Morgridge Institute for Research, Madison, WI, United States"],"affiliations":[{"raw_affiliation_string":"Center for Quantitative Cell Imaging, University of Wisconsin-Madison, Madison, WI, United States","institution_ids":["https://openalex.org/I135310074"]},{"raw_affiliation_string":"Morgridge Institute for Research, Madison, WI, United States","institution_ids":["https://openalex.org/I29680605"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":16,"corresponding_author_ids":["https://openalex.org/A5010413374"],"corresponding_institution_ids":["https://openalex.org/I135310074","https://openalex.org/I29680605"],"apc_list":{"value":1900,"currency":"USD","value_usd":1900},"apc_paid":{"value":1900,"currency":"USD","value_usd":1900},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.10671229,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"4","issue":null,"first_page":"1435733","last_page":"1435733"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9724000096321106,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9419999718666077,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8062691688537598},{"id":"https://openalex.org/keywords/implementation","display_name":"Implementation","score":0.6805762052536011},{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.6683822274208069},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6404283046722412},{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.5854150056838989},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.48229363560676575},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.45672377943992615},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.41311848163604736},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.3901461064815521},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.34414419531822205},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3421923518180847},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.2155889868736267},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.18237248063087463},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.10138282179832458}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8062691688537598},{"id":"https://openalex.org/C26713055","wikidata":"https://www.wikidata.org/wiki/Q245962","display_name":"Implementation","level":2,"score":0.6805762052536011},{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.6683822274208069},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6404283046722412},{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.5854150056838989},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.48229363560676575},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.45672377943992615},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.41311848163604736},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.3901461064815521},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.34414419531822205},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3421923518180847},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.2155889868736267},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.18237248063087463},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.10138282179832458},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3389/fbinf.2024.1435733","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2024.1435733","pdf_url":"https://public-pages-files-2025.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2024.1435733/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39399098","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39399098","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11466933","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11466933","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11466933/pdf/fbinf-04-1435733.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Front Bioinform","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:acb0d51e92ad4178b91bf64b589a97be","is_oa":true,"landing_page_url":"https://doaj.org/article/acb0d51e92ad4178b91bf64b589a97be","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Bioinformatics, Vol 4 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3389/fbinf.2024.1435733","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2024.1435733","pdf_url":"https://public-pages-files-2025.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2024.1435733/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.4399999976158142}],"awards":[{"id":"https://openalex.org/G2330693278","display_name":null,"funder_award_id":"GM135019","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6113404511","display_name":null,"funder_award_id":"P41GM135019","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6825648311","display_name":null,"funder_award_id":"U54CA268069","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7084597873","display_name":null,"funder_award_id":"P41GM135019 U54CA268069","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320315474","display_name":"Chan Zuckerberg Initiative","ror":"https://ror.org/02qenvm24"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4402933381.pdf","grobid_xml":"https://content.openalex.org/works/W4402933381.grobid-xml"},"referenced_works_count":54,"referenced_works":["https://openalex.org/W1524992328","https://openalex.org/W1558633536","https://openalex.org/W1835740130","https://openalex.org/W2015159529","https://openalex.org/W2020111712","https://openalex.org/W2022050193","https://openalex.org/W2028911404","https://openalex.org/W2031502025","https://openalex.org/W2037947871","https://openalex.org/W2083928750","https://openalex.org/W2099540110","https://openalex.org/W2099973502","https://openalex.org/W2121559065","https://openalex.org/W2138966546","https://openalex.org/W2147762902","https://openalex.org/W2167279371","https://openalex.org/W2170358380","https://openalex.org/W2467628122","https://openalex.org/W2468870810","https://openalex.org/W2472803348","https://openalex.org/W2541869304","https://openalex.org/W2560690681","https://openalex.org/W2560760128","https://openalex.org/W2580035316","https://openalex.org/W2603330924","https://openalex.org/W2769556951","https://openalex.org/W2905568839","https://openalex.org/W2952481429","https://openalex.org/W2962874213","https://openalex.org/W2966422204","https://openalex.org/W2984014186","https://openalex.org/W2991144311","https://openalex.org/W2996187588","https://openalex.org/W3003257820","https://openalex.org/W3012542478","https://openalex.org/W3033828193","https://openalex.org/W3035965352","https://openalex.org/W3099878876","https://openalex.org/W3113789352","https://openalex.org/W3148916402","https://openalex.org/W3164357081","https://openalex.org/W3196897371","https://openalex.org/W3217102738","https://openalex.org/W4220652264","https://openalex.org/W4237860405","https://openalex.org/W4254553107","https://openalex.org/W4281665512","https://openalex.org/W4306412158","https://openalex.org/W4383904262","https://openalex.org/W4383904399","https://openalex.org/W4383956887","https://openalex.org/W4385246338","https://openalex.org/W4385987495","https://openalex.org/W6666947087"],"related_works":["https://openalex.org/W4238897586","https://openalex.org/W435179959","https://openalex.org/W2619091065","https://openalex.org/W2059640416","https://openalex.org/W1490753184","https://openalex.org/W2284465472","https://openalex.org/W2291782699","https://openalex.org/W1993948687","https://openalex.org/W2000169967","https://openalex.org/W2112883198"],"abstract_inverted_index":{"Decades":[0],"of":[1,21,36,78,121,151,165],"iteration":[2],"on":[3,144,210,220],"scientific":[4],"imaging":[5],"hardware":[6],"and":[7,19,45,61,92,140,178,197],"software":[8],"has":[9],"yielded":[10],"an":[11],"explosion":[12],"in":[13,26,235],"not":[14],"only":[15],"the":[16,27,122,133,162,207,221,236],"size,":[17],"complexity,":[18],"heterogeneity":[20],"image":[22,37],"datasets":[23],"but":[24],"also":[25],"tooling":[28],"used":[29],"to":[30,58,65,75,89,132,174,205],"analyze":[31],"this":[32,102],"data.":[33],"This":[34],"wealth":[35],"analysis":[38,212,233],"tools,":[39,80],"spanning":[40],"different":[41],"programming":[42],"languages,":[43],"frameworks,":[44],"data":[46,53,204],"structures,":[47],"is":[48],"itself":[49],"a":[50,83,86,117],"problem":[51],"for":[52,85,229],"analysts":[54],"who":[55],"must":[56],"adapt":[57,141],"new":[59,91,176],"technologies":[60],"integrate":[62],"established":[63],"routines":[64],"solve":[66],"increasingly":[67],"complex":[68],"problems.":[69],"While":[70],"many":[71],"\"bridge\"":[72],"layers":[73],"exist":[74],"unify":[76,90],"pairs":[77],"popular":[79],"there":[81],"exists":[82],"need":[84,103],"general":[87],"solution":[88],"existing":[93,187],"toolkits.":[94],"The":[95],"SciJava":[96,172,218],"Ops":[97,143,173,219],"library":[98],"presented":[99],"here":[100],"addresses":[101],"through":[104],"two":[105],"novel":[106],"principles.":[107],"Algorithm":[108],"implementations":[109],"are":[110],"declared":[111],"as":[112,200,202],"plugins":[113],"called":[114],"Ops,":[115],"providing":[116],"uniform":[118],"interface":[119],"regardless":[120],"toolkit":[123],"they":[124],"came":[125],"from.":[126],"Users":[127],"express":[128],"their":[129],"needs":[130],"declaratively":[131],"Op":[134],"environment,":[135],"which":[136],"can":[137,156,169],"then":[138],"find":[139],"available":[142],"demand.":[145],"By":[146],"using":[147],"these":[148],"principles":[149],"instead":[150],"direct":[152],"function":[153],"calls,":[154],"users":[155],"write":[157],"streamlined":[158],"workflows":[159],"while":[160],"avoiding":[161],"translation":[163],"boilerplate":[164],"bridge":[166],"layers.":[167],"Developers":[168],"easily":[170],"extend":[171],"introduce":[175],"libraries":[177],"more":[179],"efficient,":[180],"specialized":[181],"algorithm":[182],"implementations,":[183],"even":[184],"immediately":[185],"benefitting":[186],"workflows.":[188],"We":[189,214],"provide":[190],"several":[191],"use":[192],"cases":[193],"showing":[194],"both":[195],"user":[196],"developer":[198],"benefits,":[199],"well":[201],"benchmarking":[203],"quantify":[206],"negligible":[208],"impact":[209],"overall":[211],"performance.":[213],"have":[215],"initially":[216],"deployed":[217],"Fiji":[222],"platform,":[223],"however":[224],"it":[225],"would":[226],"be":[227],"suitable":[228],"integration":[230],"with":[231],"additional":[232],"platforms":[234],"future.":[237]},"counts_by_year":[],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
