{"id":"https://openalex.org/W4394906394","doi":"https://doi.org/10.3389/fbinf.2024.1417428","title":"A systematic overview of single-cell transcriptomics databases, their use cases, and limitations","display_name":"A systematic overview of single-cell transcriptomics databases, their use cases, and limitations","publication_year":2024,"publication_date":"2024-07-08","ids":{"openalex":"https://openalex.org/W4394906394","doi":"https://doi.org/10.3389/fbinf.2024.1417428","pmid":"https://pubmed.ncbi.nlm.nih.gov/38699169"},"language":"en","primary_location":{"id":"doi:10.3389/fbinf.2024.1417428","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2024.1417428","pdf_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2024.1417428/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2024.1417428/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102650560","display_name":"Mahnoor N. Gondal","orcid":null},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]},{"id":"https://openalex.org/I4210117557","display_name":"Michigan Center for Translational Pathology","ror":"https://ror.org/027t4kk23","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210114445","https://openalex.org/I4210117557"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mahnoor N. Gondal","raw_affiliation_strings":["Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, United States","Michigan Center for Translational Pathology, University of Michigan, Ann Arbor, MI, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, United States","institution_ids":["https://openalex.org/I27837315"]},{"raw_affiliation_string":"Michigan Center for Translational Pathology, University of Michigan, Ann Arbor, MI, United States","institution_ids":["https://openalex.org/I27837315","https://openalex.org/I4210117557"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065905927","display_name":"Syed Hamad Hassan Shah","orcid":"https://orcid.org/0000-0001-9043-4811"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Saad Ur Rehman Shah","raw_affiliation_strings":["Gies College of Business, University of Illinois Business College, Champaign, MI, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Gies College of Business, University of Illinois Business College, Champaign, MI, United States","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003311852","display_name":"Arul M. Chinnaiyan","orcid":"https://orcid.org/0000-0001-9282-3415"},"institutions":[{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]},{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]},{"id":"https://openalex.org/I4210117557","display_name":"Michigan Center for Translational Pathology","ror":"https://ror.org/027t4kk23","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210114445","https://openalex.org/I4210117557"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Arul M. Chinnaiyan","raw_affiliation_strings":["Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, United States","Department of Pathology, University of Michigan, Ann Arbor, MI, United States","Department of Urology, University of Michigan, Ann Arbor, MI, United States","Howard Hughes Medical Institute, Ann Arbor, MI, United States","Michigan Center for Translational Pathology, University of Michigan, Ann Arbor, MI, United States","University of Michigan Rogel Cancer Center, Ann Arbor, MI, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, United States","institution_ids":["https://openalex.org/I27837315"]},{"raw_affiliation_string":"Department of Pathology, University of Michigan, Ann Arbor, MI, United States","institution_ids":["https://openalex.org/I27837315"]},{"raw_affiliation_string":"Department of Urology, University of Michigan, Ann Arbor, MI, United States","institution_ids":["https://openalex.org/I27837315"]},{"raw_affiliation_string":"Howard Hughes Medical Institute, Ann Arbor, MI, United States","institution_ids":["https://openalex.org/I1344073410"]},{"raw_affiliation_string":"Michigan Center for Translational Pathology, University of Michigan, Ann Arbor, MI, United States","institution_ids":["https://openalex.org/I27837315","https://openalex.org/I4210117557"]},{"raw_affiliation_string":"University of Michigan Rogel Cancer Center, Ann Arbor, MI, United States","institution_ids":["https://openalex.org/I27837315"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051824786","display_name":"Marcin Cie\u015blik","orcid":"https://orcid.org/0000-0002-5467-1040"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]},{"id":"https://openalex.org/I4210117557","display_name":"Michigan Center for Translational Pathology","ror":"https://ror.org/027t4kk23","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210114445","https://openalex.org/I4210117557"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Marcin Cieslik","raw_affiliation_strings":["Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, United States","Department of Pathology, University of Michigan, Ann Arbor, MI, United States","Michigan Center for Translational Pathology, University of Michigan, Ann Arbor, MI, United States","University of Michigan Rogel Cancer Center, Ann Arbor, MI, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, United States","institution_ids":["https://openalex.org/I27837315"]},{"raw_affiliation_string":"Department of Pathology, University of Michigan, Ann Arbor, MI, United States","institution_ids":["https://openalex.org/I27837315"]},{"raw_affiliation_string":"Michigan Center for Translational Pathology, University of Michigan, Ann Arbor, MI, United States","institution_ids":["https://openalex.org/I27837315","https://openalex.org/I4210117557"]},{"raw_affiliation_string":"University of Michigan Rogel Cancer Center, Ann Arbor, MI, United States","institution_ids":["https://openalex.org/I27837315"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5003311852","https://openalex.org/A5051824786"],"corresponding_institution_ids":["https://openalex.org/I1344073410","https://openalex.org/I27837315","https://openalex.org/I4210117557"],"apc_list":{"value":2125,"currency":"USD","value_usd":2125},"apc_paid":{"value":2125,"currency":"USD","value_usd":2125},"fwci":3.6373,"has_fulltext":true,"cited_by_count":23,"citation_normalized_percentile":{"value":0.9411533,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"4","issue":null,"first_page":"1417428","last_page":"1417428"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9861999750137329,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10773","display_name":"Extracellular vesicles in disease","score":0.9567999839782715,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6818033456802368},{"id":"https://openalex.org/keywords/scope","display_name":"Scope (computer science)","score":0.604835033416748},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5478432774543762},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5477097630500793},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.5276060104370117},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.4531916677951813}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6818033456802368},{"id":"https://openalex.org/C2778012447","wikidata":"https://www.wikidata.org/wiki/Q1034415","display_name":"Scope (computer science)","level":2,"score":0.604835033416748},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5478432774543762},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5477097630500793},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.5276060104370117},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.4531916677951813},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":8,"locations":[{"id":"doi:10.3389/fbinf.2024.1417428","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2024.1417428","pdf_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2024.1417428/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38699169","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38699169","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ArXiv","raw_type":null},{"id":"pmid:39040140","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39040140","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in bioinformatics","raw_type":null},{"id":"pmh:oai:arXiv.org:2404.10545","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2404.10545","pdf_url":"https://arxiv.org/pdf/2404.10545","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:11065044","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11065044","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11065044/pdf/nihpp-2404.10545v1.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ArXiv","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:11260681","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11260681","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11260681/pdf/fbinf-04-1417428.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Front Bioinform","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:43bc2c481c3141f5864cbec92ea63a55","is_oa":true,"landing_page_url":"https://doaj.org/article/43bc2c481c3141f5864cbec92ea63a55","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Bioinformatics, Vol 4 (2024)","raw_type":"article"},{"id":"doi:10.48550/arxiv.2404.10545","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2404.10545","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Preprint"}],"best_oa_location":{"id":"doi:10.3389/fbinf.2024.1417428","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2024.1417428","pdf_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2024.1417428/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.46000000834465027}],"awards":[{"id":"https://openalex.org/G1472747617","display_name":null,"funder_award_id":"P50  CA186786","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G1670837890","display_name":null,"funder_award_id":"U2C CA271854","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G4797887072","display_name":null,"funder_award_id":"R35-CA231996","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G5262676430","display_name":null,"funder_award_id":"T2019-006","funder_id":"https://openalex.org/F4320306536","funder_display_name":"V Foundation for Cancer Research"},{"id":"https://openalex.org/G5836662354","display_name":null,"funder_award_id":"R35CA231996 P50CA186786 U2CCA271854","funder_id":"https://openalex.org/F4320320756","funder_display_name":"National Cancer Institute - Singapore"},{"id":"https://openalex.org/G679204347","display_name":null,"funder_award_id":"ICI398672","funder_id":"https://openalex.org/F4320317949","funder_display_name":"Fund for Innovation in Cancer Informatics"}],"funders":[{"id":"https://openalex.org/F4320306536","display_name":"V Foundation for Cancer Research","ror":"https://ror.org/00kbbk236"},{"id":"https://openalex.org/F4320313998","display_name":"Vanderbilt University Medical Center","ror":"https://ror.org/05dq2gs74"},{"id":"https://openalex.org/F4320317949","display_name":"Fund for Innovation in Cancer Informatics","ror":null},{"id":"https://openalex.org/F4320320756","display_name":"National Cancer Institute - Singapore","ror":"https://ror.org/03bqk3e80"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4394906394.pdf"},"referenced_works_count":88,"referenced_works":["https://openalex.org/W2069089843","https://openalex.org/W2612519453","https://openalex.org/W2626653156","https://openalex.org/W2765472239","https://openalex.org/W2789798853","https://openalex.org/W2799751301","https://openalex.org/W2805619986","https://openalex.org/W2807856729","https://openalex.org/W2897044695","https://openalex.org/W2898312835","https://openalex.org/W2900386834","https://openalex.org/W2931036699","https://openalex.org/W2946232537","https://openalex.org/W2949177718","https://openalex.org/W2949637707","https://openalex.org/W2949829455","https://openalex.org/W2950104637","https://openalex.org/W2970386048","https://openalex.org/W2971050045","https://openalex.org/W2971653850","https://openalex.org/W2973378377","https://openalex.org/W2981214572","https://openalex.org/W2982521190","https://openalex.org/W2984472267","https://openalex.org/W2997280954","https://openalex.org/W3002417351","https://openalex.org/W3005127469","https://openalex.org/W3013151148","https://openalex.org/W3013926423","https://openalex.org/W3015272799","https://openalex.org/W3032090133","https://openalex.org/W3041348098","https://openalex.org/W3078555423","https://openalex.org/W3091035534","https://openalex.org/W3092493138","https://openalex.org/W3103119004","https://openalex.org/W3109243443","https://openalex.org/W3113268000","https://openalex.org/W3148879322","https://openalex.org/W3157094484","https://openalex.org/W3159800610","https://openalex.org/W3178987458","https://openalex.org/W3184729641","https://openalex.org/W3204092016","https://openalex.org/W3205950546","https://openalex.org/W3207394671","https://openalex.org/W3209238322","https://openalex.org/W3214975922","https://openalex.org/W4213108508","https://openalex.org/W4214673148","https://openalex.org/W4225598893","https://openalex.org/W4280598116","https://openalex.org/W4281718099","https://openalex.org/W4289545345","https://openalex.org/W4290565538","https://openalex.org/W4292209017","https://openalex.org/W4293194976","https://openalex.org/W4295261364","https://openalex.org/W4297964967","https://openalex.org/W4303614109","https://openalex.org/W4307969384","https://openalex.org/W4308834549","https://openalex.org/W4310942643","https://openalex.org/W4313312416","https://openalex.org/W4317106788","https://openalex.org/W4361285051","https://openalex.org/W4361856939","https://openalex.org/W4366256714","https://openalex.org/W4367314529","https://openalex.org/W4376106094","https://openalex.org/W4379879135","https://openalex.org/W4381248780","https://openalex.org/W4382022265","https://openalex.org/W4383710754","https://openalex.org/W4384523448","https://openalex.org/W4385416071","https://openalex.org/W4386117348","https://openalex.org/W4386272636","https://openalex.org/W4386636936","https://openalex.org/W4387603021","https://openalex.org/W4387674194","https://openalex.org/W4387955485","https://openalex.org/W4388871056","https://openalex.org/W4389041912","https://openalex.org/W4391103235","https://openalex.org/W4393084618","https://openalex.org/W4393276283","https://openalex.org/W4399388096"],"related_works":["https://openalex.org/W4241523039","https://openalex.org/W2360028903","https://openalex.org/W4280543773","https://openalex.org/W178231042","https://openalex.org/W2366083136","https://openalex.org/W2387622493","https://openalex.org/W1932132538","https://openalex.org/W2357832196","https://openalex.org/W1566252468","https://openalex.org/W4200375594"],"abstract_inverted_index":{"Rapid":[0],"advancements":[1],"in":[2,165],"high-throughput":[3],"single-cell":[4,125,155],"RNA-seq":[5],"(scRNA-seq)":[6],"technologies":[7],"and":[8,27,42,53,62,85,98,112,157],"experimental":[9],"protocols":[10],"have":[11],"led":[12],"to":[13,94,124,138,150],"the":[14,60,108,144,152,166],"generation":[15],"of":[16,19,146,154],"vast":[17],"amounts":[18],"transcriptomic":[20],"data":[21,93,156],"that":[22,78],"populates":[23],"several":[24],"online":[25],"databases":[26],"repositories.":[28],"Here,":[29],"we":[30,58],"systematically":[31],"examined":[32],"large-scale":[33,68],"scRNA-seq":[34,69,80],"databases,":[35,48,50,52,70,81],"categorizing":[36],"them":[37],"based":[38],"on":[39],"their":[40,83],"scope":[41],"purpose":[43],"such":[44],"as":[45],"general,":[46],"tissue-specific":[47],"disease-specific":[49],"cancer-focused":[51],"cell":[54],"type-focused":[55],"databases.":[56],"Next,":[57],"discuss":[59],"technical":[61],"methodological":[63],"challenges":[64],"associated":[65],"with":[66,72],"curating":[67],"along":[71],"current":[73],"computational":[74,111,148],"solutions.":[75],"We":[76],"argue":[77],"understanding":[79],"including":[82],"limitations":[84],"assumptions,":[86],"is":[87],"crucial":[88],"for":[89,121,162],"effectively":[90],"utilizing":[91],"this":[92],"make":[95],"robust":[96],"discoveries":[97],"identify":[99],"novel":[100],"biological":[101],"insights.":[102],"Such":[103],"platforms":[104,128],"can":[105],"help":[106],"bridge":[107],"gap":[109],"between":[110],"wet":[113],"lab":[114],"scientists":[115],"through":[116],"user-friendly":[117],"web-based":[118],"interfaces":[119],"needed":[120],"democratizing":[122],"access":[123],"data.":[126],"These":[127],"would":[129],"facilitate":[130],"interdisciplinary":[131],"research,":[132],"enabling":[133],"researchers":[134],"from":[135],"various":[136],"disciplines":[137],"collaborate":[139],"effectively.":[140],"This":[141],"review":[142],"underscores":[143],"importance":[145],"leveraging":[147],"approaches":[149],"unravel":[151],"complexities":[153],"offers":[158],"a":[159],"promising":[160],"direction":[161],"future":[163],"research":[164],"field.":[167]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":15},{"year":2024,"cited_by_count":2}],"updated_date":"2026-08-12T07:12:00.856984","created_date":"2024-04-18T00:00:00"}
