{"id":"https://openalex.org/W4396619959","doi":"https://doi.org/10.3389/fbinf.2024.1415791","title":"Editorial: Computational methods for analysis of DNA methylation data, volume II","display_name":"Editorial: Computational methods for analysis of DNA methylation data, volume II","publication_year":2024,"publication_date":"2024-05-03","ids":{"openalex":"https://openalex.org/W4396619959","doi":"https://doi.org/10.3389/fbinf.2024.1415791","pmid":"https://pubmed.ncbi.nlm.nih.gov/38766648"},"language":"en","primary_location":{"id":"doi:10.3389/fbinf.2024.1415791","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2024.1415791","pdf_url":null,"source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"type":"editorial","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.3389/fbinf.2024.1415791","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055593623","display_name":"Pietro Di Lena","orcid":"https://orcid.org/0000-0002-1838-8918"},"institutions":[{"id":"https://openalex.org/I9360294","display_name":"University of Bologna","ror":"https://ror.org/01111rn36","country_code":"IT","type":"education","lineage":["https://openalex.org/I9360294"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Pietro Di Lena","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Bologna, Bologna, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Bologna, Bologna, Italy","institution_ids":["https://openalex.org/I9360294"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081542076","display_name":"Christine Nardini","orcid":"https://orcid.org/0000-0001-7601-321X"},"institutions":[{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Christine Nardini","raw_affiliation_strings":["CNR IAC \"Mauro Picone\", Consiglio Nazionale delle Ricerche (CNR), Rome, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CNR IAC \"Mauro Picone\", Consiglio Nazionale delle Ricerche (CNR), Rome, Italy","institution_ids":["https://openalex.org/I4210155236"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5011670317","display_name":"Matteo Pellegrini","orcid":"https://orcid.org/0000-0001-9355-9564"},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Matteo Pellegrini","raw_affiliation_strings":["Department of Molecular, Cell and Developmental Biology, University of California, Los Angeles, Los Angeles, CA, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular, Cell and Developmental Biology, University of California, Los Angeles, Los Angeles, CA, United States","institution_ids":["https://openalex.org/I161318765"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5011670317","https://openalex.org/A5055593623","https://openalex.org/A5081542076"],"corresponding_institution_ids":["https://openalex.org/I161318765","https://openalex.org/I4210155236","https://openalex.org/I9360294"],"apc_list":{"value":2125,"currency":"USD","value_usd":2125},"apc_paid":{"value":2125,"currency":"USD","value_usd":2125},"fwci":null,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"4","issue":null,"first_page":"1415791","last_page":"1415791"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9225000143051147,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/volume","display_name":"Volume (thermodynamics)","score":0.5399529933929443},{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.4832763969898224},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.42633000016212463},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.42081156373023987},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2603786587715149},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.16127043962478638},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.14524492621421814},{"id":"https://openalex.org/keywords/thermodynamics","display_name":"Thermodynamics","score":0.11602780222892761}],"concepts":[{"id":"https://openalex.org/C20556612","wikidata":"https://www.wikidata.org/wiki/Q4469374","display_name":"Volume (thermodynamics)","level":2,"score":0.5399529933929443},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.4832763969898224},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.42633000016212463},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.42081156373023987},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2603786587715149},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16127043962478638},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.14524492621421814},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.11602780222892761},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.3389/fbinf.2024.1415791","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2024.1415791","pdf_url":null,"source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38766648","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38766648","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in bioinformatics","raw_type":null},{"id":"pmh:oai:cris.unibo.it:11585/969334","is_oa":true,"landing_page_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2024.1415791/full","pdf_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2024.1415791/pdf","source":{"id":"https://openalex.org/S4306402579","display_name":"Archivio istituzionale della ricerca (Alma Mater Studiorum Universit\u00e0 di Bologna)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210117483","host_organization_name":"Istituto di Ematologia di Bologna","host_organization_lineage":["https://openalex.org/I4210117483"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:11099281","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11099281","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11099281/pdf/fbinf-04-1415791.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Front Bioinform","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:e1bcd6a5de2f449eaed14b8a4b077af8","is_oa":true,"landing_page_url":"https://doaj.org/article/e1bcd6a5de2f449eaed14b8a4b077af8","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Bioinformatics, Vol 4 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3389/fbinf.2024.1415791","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2024.1415791","pdf_url":null,"source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":5,"referenced_works":["https://openalex.org/W2163887613","https://openalex.org/W2773327522","https://openalex.org/W2796559433","https://openalex.org/W3037895933","https://openalex.org/W3164927336"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052","https://openalex.org/W2382290278","https://openalex.org/W4395014643"],"abstract_inverted_index":{"DNA":[0,20,159],"methylation":[1,160],"stands":[2],"out":[3],"as":[4,30,34,57],"one":[5],"of":[6,17,59,70,75,110,123,131,137,151,176],"the":[7,15,67,82,120,128,135,146],"most":[8,141],"extensively":[9],"investigated":[10],"epigenetic":[11,31,76,97,124],"modifications":[12],"14":[13],"within":[14],"realm":[16,136],"eukaryotic":[18],"biology.":[19],"methylation-based":[21],"predictive":[22,121,138,182],"models":[23],"for":[24,38,170,192],"chronological":[25,51],"15":[26],"age,":[27],"referred":[28],"to":[29,66,118,178],"clocks,":[32],"serve":[33],"widely":[35],"used":[36],"tools":[37],"investigating":[39],"age-related":[40],"pathologies":[41],"16":[42],"and":[43,49,90,101,126,148,174,184],"physiological":[44],"alterations.":[45],"Discrepancies":[46],"between":[47,96],"predicted":[48],"actual":[50],"ages":[52],"are":[53],"17":[54],"frequently":[55],"interpreted":[56],"manifestations":[58],"biological":[60],"age":[61,98],"acceleration,":[62],"a":[63,167],"phenomenon":[64],"linked":[65],"18":[68],"onset":[69],"various":[71],"disorders.":[72],"A":[73],"plethora":[74],"clocks":[77,125],"have":[78,93],"been":[79],"developed":[80],"in":[81,116],"literature":[83],"(Di":[84],"19":[85],"Lena":[86],"et":[87],"al.,":[88],"2021),":[89],"several":[91],"studies":[92],"demonstrated":[94],"associations":[95],"20":[99],"acceleration":[100],"pathological":[102],"conditions":[103],"(Horvath,":[104],"Raj,":[105],"2018).":[106],"This":[107],"active":[108],"area":[109],"research":[111,153],"is":[112,155,166],"currently":[113],"21":[114],"engaged":[115],"endeavors":[117],"enhance":[119],"capabilities":[122],"facilitate":[127],"22":[129],"translation":[130],"their":[132],"applications":[133],"into":[134,189],"medicine.":[139],"The":[140],"significant":[142],"conclusion":[143],"drawn":[144],"from":[145],"first":[147],"second":[149],"volumes":[150],"this":[152],"topic":[154],"that":[156],"73":[157],"although":[158],"analysis":[161],"shows":[162],"great":[163],"potential,":[164],"there":[165],"pressing":[168],"need":[169],"further":[171],"74":[172],"investigation":[173],"refinement":[175],"methodologies":[177],"fully":[179],"harness":[180],"its":[181,186],"power":[183],"translate":[185],"75":[187],"findings":[188],"actionable":[190],"insights":[191],"clinical":[193],"practice.":[194]},"counts_by_year":[],"updated_date":"2026-08-18T07:49:30.821534","created_date":"2025-10-10T00:00:00"}
