{"id":"https://openalex.org/W4394723269","doi":"https://doi.org/10.3389/fbinf.2024.1356659","title":"From complex data to clear insights: visualizing molecular dynamics trajectories","display_name":"From complex data to clear insights: visualizing molecular dynamics trajectories","publication_year":2024,"publication_date":"2024-04-11","ids":{"openalex":"https://openalex.org/W4394723269","doi":"https://doi.org/10.3389/fbinf.2024.1356659","pmid":"https://pubmed.ncbi.nlm.nih.gov/38665177"},"language":"en","primary_location":{"id":"doi:10.3389/fbinf.2024.1356659","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2024.1356659","pdf_url":"https://www.frontiersin.org/articles/10.3389/fbinf.2024.1356659/pdf?isPublishedV2=False","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.frontiersin.org/articles/10.3389/fbinf.2024.1356659/pdf?isPublishedV2=False","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5095372352","display_name":"Hayet Belghit","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4387155780","display_name":"Matrice Extracellulaire et Dynamique Cellulaire MEDyC","ror":"https://ror.org/017p6sq53","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4387155780","https://openalex.org/I96226040"]},{"id":"https://openalex.org/I96226040","display_name":"Universit\u00e9 de Reims Champagne-Ardenne","ror":"https://ror.org/03hypw319","country_code":"FR","type":"education","lineage":["https://openalex.org/I96226040"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Hayet Belghit","raw_affiliation_strings":["Universit\u00e9 de Reims Champagne-Ardenne, CNRS, MEDYC, Reims, France"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 de Reims Champagne-Ardenne, CNRS, MEDYC, Reims, France","institution_ids":["https://openalex.org/I96226040","https://openalex.org/I4387155780","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053283738","display_name":"Mariano Spivak","orcid":"https://orcid.org/0000-0003-2249-119X"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4210094297","display_name":"Laboratoire de Biochimie Th\u00e9orique","ror":"https://ror.org/00nvjgv40","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I204730241","https://openalex.org/I4210094297","https://openalex.org/I4210128300"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Mariano Spivak","raw_affiliation_strings":["Universit\u00e9 Paris Cit\u00e9, CNRS, Laboratoire de Biochimie Th\u00e9orique, Paris, France"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Paris Cit\u00e9, CNRS, Laboratoire de Biochimie Th\u00e9orique, Paris, France","institution_ids":["https://openalex.org/I204730241","https://openalex.org/I4210094297","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016118429","display_name":"Manuel Dauchez","orcid":"https://orcid.org/0000-0002-6743-7915"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4387155780","display_name":"Matrice Extracellulaire et Dynamique Cellulaire MEDyC","ror":"https://ror.org/017p6sq53","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4387155780","https://openalex.org/I96226040"]},{"id":"https://openalex.org/I96226040","display_name":"Universit\u00e9 de Reims Champagne-Ardenne","ror":"https://ror.org/03hypw319","country_code":"FR","type":"education","lineage":["https://openalex.org/I96226040"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Manuel Dauchez","raw_affiliation_strings":["Universit\u00e9 de Reims Champagne-Ardenne, CNRS, MEDYC, Reims, France"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 de Reims Champagne-Ardenne, CNRS, MEDYC, Reims, France","institution_ids":["https://openalex.org/I96226040","https://openalex.org/I4387155780","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016139627","display_name":"Marc Baaden","orcid":"https://orcid.org/0000-0001-6472-0486"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4210094297","display_name":"Laboratoire de Biochimie Th\u00e9orique","ror":"https://ror.org/00nvjgv40","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I204730241","https://openalex.org/I4210094297","https://openalex.org/I4210128300"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Marc Baaden","raw_affiliation_strings":["Universit\u00e9 Paris Cit\u00e9, CNRS, Laboratoire de Biochimie Th\u00e9orique, Paris, France"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Paris Cit\u00e9, CNRS, Laboratoire de Biochimie Th\u00e9orique, Paris, France","institution_ids":["https://openalex.org/I204730241","https://openalex.org/I4210094297","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5000587878","display_name":"Jessica Jonquet-Pr\u00e9voteau","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4387155780","display_name":"Matrice Extracellulaire et Dynamique Cellulaire MEDyC","ror":"https://ror.org/017p6sq53","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4387155780","https://openalex.org/I96226040"]},{"id":"https://openalex.org/I96226040","display_name":"Universit\u00e9 de Reims Champagne-Ardenne","ror":"https://ror.org/03hypw319","country_code":"FR","type":"education","lineage":["https://openalex.org/I96226040"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Jessica Jonquet-Prevoteau","raw_affiliation_strings":["Universit\u00e9 de Reims Champagne-Ardenne, CNRS, MEDYC, Reims, France"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 de Reims Champagne-Ardenne, CNRS, MEDYC, Reims, France","institution_ids":["https://openalex.org/I96226040","https://openalex.org/I4387155780","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5000587878","https://openalex.org/A5016139627"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I204730241","https://openalex.org/I4210094297","https://openalex.org/I4387155780","https://openalex.org/I96226040"],"apc_list":{"value":1900,"currency":"USD","value_usd":1900},"apc_paid":{"value":1900,"currency":"USD","value_usd":1900},"fwci":2.0187,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.86160983,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"4","issue":null,"first_page":"1356659","last_page":"1356659"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9672999978065491,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9672999978065491,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9599999785423279,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10064","display_name":"Complex Network Analysis Techniques","score":0.948199987411499,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.8257578611373901},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7407267689704895},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.603935718536377},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5518673658370972},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.4943680763244629},{"id":"https://openalex.org/keywords/raw-data","display_name":"Raw data","score":0.48744943737983704},{"id":"https://openalex.org/keywords/complex-system","display_name":"Complex system","score":0.4814585745334625},{"id":"https://openalex.org/keywords/creative-visualization","display_name":"Creative visualization","score":0.46139949560165405},{"id":"https://openalex.org/keywords/focus","display_name":"Focus (optics)","score":0.45510542392730713},{"id":"https://openalex.org/keywords/interpretation","display_name":"Interpretation (philosophy)","score":0.4213109314441681},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3286803066730499},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.18460941314697266}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.8257578611373901},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7407267689704895},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.603935718536377},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5518673658370972},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.4943680763244629},{"id":"https://openalex.org/C132964779","wikidata":"https://www.wikidata.org/wiki/Q2110223","display_name":"Raw data","level":2,"score":0.48744943737983704},{"id":"https://openalex.org/C47822265","wikidata":"https://www.wikidata.org/wiki/Q854457","display_name":"Complex system","level":2,"score":0.4814585745334625},{"id":"https://openalex.org/C14669888","wikidata":"https://www.wikidata.org/wiki/Q4014850","display_name":"Creative visualization","level":3,"score":0.46139949560165405},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.45510542392730713},{"id":"https://openalex.org/C527412718","wikidata":"https://www.wikidata.org/wiki/Q855395","display_name":"Interpretation (philosophy)","level":2,"score":0.4213109314441681},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3286803066730499},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.18460941314697266},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.3389/fbinf.2024.1356659","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2024.1356659","pdf_url":"https://www.frontiersin.org/articles/10.3389/fbinf.2024.1356659/pdf?isPublishedV2=False","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38665177","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38665177","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in bioinformatics","raw_type":null},{"id":"pmh:oai:HAL:hal-04568346v1","is_oa":true,"landing_page_url":"https://hal.science/hal-04568346","pdf_url":"https://hal.science/hal-04568346/document","source":{"id":"https://openalex.org/S4406922466","display_name":"SPIRE - Sciences Po Institutional REpository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Bioinformatics, 2024, 4, &#x27E8;10.3389/fbinf.2024.1356659&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:pubmedcentral.nih.gov:11043564","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11043564","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11043564/pdf/fbinf-04-1356659.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Front Bioinform","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:d71bd7d1f5704880bb66652f7e9fb870","is_oa":true,"landing_page_url":"https://doaj.org/article/d71bd7d1f5704880bb66652f7e9fb870","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Bioinformatics, Vol 4 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3389/fbinf.2024.1356659","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2024.1356659","pdf_url":"https://www.frontiersin.org/articles/10.3389/fbinf.2024.1356659/pdf?isPublishedV2=False","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G1041345024","display_name":null,"funder_award_id":"CACSICE","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G110128176","display_name":null,"funder_award_id":"ANR-21-CE45-0014","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G2849726431","display_name":"Data mining, Visualization and Computational Modeling of Redox Signaling Networks","funder_award_id":"ANR-19-CE45-0017","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G3807293409","display_name":null,"funder_award_id":"ANR-11-LABX-00","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G4294502132","display_name":null,"funder_award_id":"11-LABX-0011","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G4867735736","display_name":null,"funder_award_id":"11-EQPX-0008","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G5341702794","display_name":null,"funder_award_id":"11-EQPX-00","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G6936976374","display_name":null,"funder_award_id":"DYNAMO","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G8318455765","display_name":null,"funder_award_id":"ANR-19","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G879526358","display_name":null,"funder_award_id":"ANR-11-EQPX-0008","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G8924954789","display_name":null,"funder_award_id":"ANR-11-LABX-0011","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4394723269.pdf"},"referenced_works_count":214,"referenced_works":["https://openalex.org/W1493374012","https://openalex.org/W1521847617","https://openalex.org/W1536606897","https://openalex.org/W1546610148","https://openalex.org/W1879416943","https://openalex.org/W1907619767","https://openalex.org/W1974035453","https://openalex.org/W1975105569","https://openalex.org/W1976898303","https://openalex.org/W1984493861","https://openalex.org/W1986518446","https://openalex.org/W1996067920","https://openalex.org/W2005543816","https://openalex.org/W2009304399","https://openalex.org/W2012879549","https://openalex.org/W2018151361","https://openalex.org/W2018393587","https://openalex.org/W2021064626","https://openalex.org/W2021259459","https://openalex.org/W2022597857","https://openalex.org/W2022993040","https://openalex.org/W2025747372","https://openalex.org/W2028056984","https://openalex.org/W2028293439","https://openalex.org/W2028705462","https://openalex.org/W2028753963","https://openalex.org/W2029667189","https://openalex.org/W2033098008","https://openalex.org/W2039546043","https://openalex.org/W2040836656","https://openalex.org/W2042640674","https://openalex.org/W2060886672","https://openalex.org/W2062709131","https://openalex.org/W2069152576","https://openalex.org/W2071883589","https://openalex.org/W2074473216","https://openalex.org/W2079875740","https://openalex.org/W2080993455","https://openalex.org/W2081498635","https://openalex.org/W2098055048","https://openalex.org/W2107278499","https://openalex.org/W2120514074","https://openalex.org/W2120568174","https://openalex.org/W2123817333","https://openalex.org/W2126364917","https://openalex.org/W2128934301","https://openalex.org/W2132629607","https://openalex.org/W2134600600","https://openalex.org/W2140559445","https://openalex.org/W2141726372","https://openalex.org/W2141891891","https://openalex.org/W2143203329","https://openalex.org/W2145961753","https://openalex.org/W2146068001","https://openalex.org/W2146770788","https://openalex.org/W2147988069","https://openalex.org/W2149130179","https://openalex.org/W2150945052","https://openalex.org/W2152013121","https://openalex.org/W2154792548","https://openalex.org/W2160715766","https://openalex.org/W2167549547","https://openalex.org/W2171727742","https://openalex.org/W2174058075","https://openalex.org/W2202710059","https://openalex.org/W2240308009","https://openalex.org/W2264001179","https://openalex.org/W2292169708","https://openalex.org/W2320259278","https://openalex.org/W2478973235","https://openalex.org/W2479768743","https://openalex.org/W2507758807","https://openalex.org/W2515351726","https://openalex.org/W2549327495","https://openalex.org/W2568320240","https://openalex.org/W2587402338","https://openalex.org/W2588296599","https://openalex.org/W2588940733","https://openalex.org/W2612725110","https://openalex.org/W2725860115","https://openalex.org/W2734356283","https://openalex.org/W2742394249","https://openalex.org/W2744078451","https://openalex.org/W2751173104","https://openalex.org/W2751478023","https://openalex.org/W2768177014","https://openalex.org/W2771627141","https://openalex.org/W2772618362","https://openalex.org/W2776282729","https://openalex.org/W2792275114","https://openalex.org/W2796078406","https://openalex.org/W2798130635","https://openalex.org/W2805235778","https://openalex.org/W2805556045","https://openalex.org/W2806399642","https://openalex.org/W2827218188","https://openalex.org/W2831736488","https://openalex.org/W2831787316","https://openalex.org/W2883919942","https://openalex.org/W2888619565","https://openalex.org/W2888970688","https://openalex.org/W2889696754","https://openalex.org/W2890117963","https://openalex.org/W2890188984","https://openalex.org/W2890964348","https://openalex.org/W2894589585","https://openalex.org/W2901361432","https://openalex.org/W2903004900","https://openalex.org/W2910637413","https://openalex.org/W2922038865","https://openalex.org/W2923423536","https://openalex.org/W2927778654","https://openalex.org/W2936083612","https://openalex.org/W2942707551","https://openalex.org/W2943039562","https://openalex.org/W2952949761","https://openalex.org/W2955481703","https://openalex.org/W2957177175","https://openalex.org/W2957249560","https://openalex.org/W2958771624","https://openalex.org/W2961564486","https://openalex.org/W2962883675","https://openalex.org/W2963333474","https://openalex.org/W2966817554","https://openalex.org/W2969264976","https://openalex.org/W2971524803","https://openalex.org/W2974666250","https://openalex.org/W2976189766","https://openalex.org/W2977390296","https://openalex.org/W2986014350","https://openalex.org/W2991285488","https://openalex.org/W3003901882","https://openalex.org/W3007306575","https://openalex.org/W3007707119","https://openalex.org/W3014347154","https://openalex.org/W3021474118","https://openalex.org/W3022359438","https://openalex.org/W3026263555","https://openalex.org/W3030441522","https://openalex.org/W3037811806","https://openalex.org/W3038901077","https://openalex.org/W3042198040","https://openalex.org/W3044853797","https://openalex.org/W3047599492","https://openalex.org/W3101594315","https://openalex.org/W3105168397","https://openalex.org/W3105639474","https://openalex.org/W3111799537","https://openalex.org/W3119625501","https://openalex.org/W3133847258","https://openalex.org/W3141185651","https://openalex.org/W3141795233","https://openalex.org/W3155545561","https://openalex.org/W3159719254","https://openalex.org/W3165004754","https://openalex.org/W3182234193","https://openalex.org/W3190622317","https://openalex.org/W3194279182","https://openalex.org/W3197067289","https://openalex.org/W3200045630","https://openalex.org/W4200152175","https://openalex.org/W4224910107","https://openalex.org/W4247683540","https://openalex.org/W4282927558","https://openalex.org/W4283370938","https://openalex.org/W4283779921","https://openalex.org/W4293094227","https://openalex.org/W4297094596","https://openalex.org/W4297779812","https://openalex.org/W4300166936","https://openalex.org/W4307230602","https://openalex.org/W4312203835","https://openalex.org/W4317104064","https://openalex.org/W4318166443","https://openalex.org/W4321783916","https://openalex.org/W4322766359","https://openalex.org/W4367673903","https://openalex.org/W4376870699","https://openalex.org/W4377220694","https://openalex.org/W4380873918","https://openalex.org/W4382240185","https://openalex.org/W4386897003","https://openalex.org/W4387440676","https://openalex.org/W4388505086","https://openalex.org/W4393508042","https://openalex.org/W6631147476","https://openalex.org/W6631178128","https://openalex.org/W6632269647","https://openalex.org/W6632599874","https://openalex.org/W6651874031","https://openalex.org/W6657226433","https://openalex.org/W6671350166","https://openalex.org/W6674851328","https://openalex.org/W6678468400","https://openalex.org/W6680586169","https://openalex.org/W6691653631","https://openalex.org/W6692967838","https://openalex.org/W6721217172","https://openalex.org/W6721598785","https://openalex.org/W6733363299","https://openalex.org/W6733780128","https://openalex.org/W6743558163","https://openalex.org/W6743602878","https://openalex.org/W6745608690","https://openalex.org/W6749668333","https://openalex.org/W6752002327","https://openalex.org/W6764986194","https://openalex.org/W6766463026","https://openalex.org/W6767344714","https://openalex.org/W6769706633","https://openalex.org/W6770140087","https://openalex.org/W6849843413","https://openalex.org/W6872336845","https://openalex.org/W6962793429"],"related_works":["https://openalex.org/W2013728941","https://openalex.org/W4225274103","https://openalex.org/W2105200106","https://openalex.org/W2129488645","https://openalex.org/W2154046714","https://openalex.org/W2816876164","https://openalex.org/W1938514595","https://openalex.org/W2799265079","https://openalex.org/W2108010457","https://openalex.org/W3143204169"],"abstract_inverted_index":{"Advances":[0],"in":[1,7,91,108],"simulations,":[2,138],"combined":[3],"with":[4,74],"technological":[5],"developments":[6],"high-performance":[8],"computing,":[9],"have":[10],"made":[11],"it":[12],"possible":[13],"to":[14,27,52,67,84],"produce":[15],"a":[16,75,105],"physically":[17],"accurate":[18],"dynamic":[19,50],"representation":[20],"of":[21,29,38,47,70,78,86,114,135,161],"complex":[22],"biological":[23,58],"systems":[24,73],"involving":[25,44],"millions":[26],"billions":[28],"atoms":[30],"over":[31],"increasingly":[32,64],"long":[33],"simulation":[34,93],"times.":[35],"The":[36],"analysis":[37,62,111],"these":[39],"computed":[40],"simulations":[41],"is":[42],"crucial,":[43],"the":[45,56,68,71,110,125,143,158],"interpretation":[46,113],"structural":[48],"and":[49,98,112,127,154,156],"data":[51,94],"gain":[53],"insights":[54],"into":[55],"underlying":[57],"processes.":[59],"However,":[60],"this":[61,119,149],"becomes":[63],"challenging":[65],"due":[66],"complexity":[69],"generated":[72],"large":[76],"number":[77],"individual":[79],"runs,":[80],"ranging":[81],"from":[82],"hundreds":[83],"thousands":[85],"trajectories.":[87],"This":[88],"massive":[89],"increase":[90],"raw":[92],"creates":[95],"additional":[96],"processing":[97],"visualization":[99,102,134],"challenges.":[100],"Effective":[101],"techniques":[103,126],"play":[104],"vital":[106],"role":[107],"facilitating":[109],"molecular":[115,136,162],"dynamics":[116,137,163],"simulations.":[117],"In":[118],"paper,":[120],"we":[121,141],"focus":[122],"mainly":[123],"on":[124],"tools":[128],"that":[129],"can":[130],"be":[131],"used":[132,146],"for":[133,148],"among":[139],"which":[140],"highlight":[142],"few":[144],"approaches":[145],"specifically":[147],"purpose,":[150],"discussing":[151],"their":[152],"advantages":[153],"limitations,":[155],"addressing":[157],"future":[159],"challenges":[160],"visualization.":[164]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":5}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
