{"id":"https://openalex.org/W4389309199","doi":"https://doi.org/10.3389/fbinf.2023.1311287","title":"RCSB Protein Data Bank: visualizing groups of experimentally determined PDB structures alongside computed structure models of proteins","display_name":"RCSB Protein Data Bank: visualizing groups of experimentally determined PDB structures alongside computed structure models of proteins","publication_year":2023,"publication_date":"2023-12-04","ids":{"openalex":"https://openalex.org/W4389309199","doi":"https://doi.org/10.3389/fbinf.2023.1311287","pmid":"https://pubmed.ncbi.nlm.nih.gov/38111685"},"language":"en","primary_location":{"id":"doi:10.3389/fbinf.2023.1311287","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2023.1311287","pdf_url":"https://www.frontiersin.org/articles/10.3389/fbinf.2023.1311287/pdf?isPublishedV2=False","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.frontiersin.org/articles/10.3389/fbinf.2023.1311287/pdf?isPublishedV2=False","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007270631","display_name":"Joan Segura","orcid":"https://orcid.org/0000-0001-5593-735X"},"institutions":[{"id":"https://openalex.org/I181653535","display_name":"San Diego Supercomputer Center","ror":"https://ror.org/04mg3nk07","country_code":"US","type":"facility","lineage":["https://openalex.org/I181653535","https://openalex.org/I36258959"]},{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Joan Segura","raw_affiliation_strings":["Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center, University of California San Diego, San Diego, CA, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center, University of California San Diego, San Diego, CA, United States","institution_ids":["https://openalex.org/I181653535","https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061045572","display_name":"Yana Rose","orcid":"https://orcid.org/0000-0003-1018-5718"},"institutions":[{"id":"https://openalex.org/I181653535","display_name":"San Diego Supercomputer Center","ror":"https://ror.org/04mg3nk07","country_code":"US","type":"facility","lineage":["https://openalex.org/I181653535","https://openalex.org/I36258959"]},{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yana Rose","raw_affiliation_strings":["Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center, University of California San Diego, San Diego, CA, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center, University of California San Diego, San Diego, CA, United States","institution_ids":["https://openalex.org/I181653535","https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037719857","display_name":"Chunxiao Bi","orcid":null},"institutions":[{"id":"https://openalex.org/I181653535","display_name":"San Diego Supercomputer Center","ror":"https://ror.org/04mg3nk07","country_code":"US","type":"facility","lineage":["https://openalex.org/I181653535","https://openalex.org/I36258959"]},{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chunxiao Bi","raw_affiliation_strings":["Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center, University of California San Diego, San Diego, CA, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center, University of California San Diego, San Diego, CA, United States","institution_ids":["https://openalex.org/I181653535","https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003460293","display_name":"Jos\u00e9 M. Duarte","orcid":"https://orcid.org/0000-0002-9544-5621"},"institutions":[{"id":"https://openalex.org/I181653535","display_name":"San Diego Supercomputer Center","ror":"https://ror.org/04mg3nk07","country_code":"US","type":"facility","lineage":["https://openalex.org/I181653535","https://openalex.org/I36258959"]},{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jose Duarte","raw_affiliation_strings":["Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center, University of California San Diego, San Diego, CA, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center, University of California San Diego, San Diego, CA, United States","institution_ids":["https://openalex.org/I181653535","https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068648875","display_name":"S.K. Burley","orcid":"https://orcid.org/0000-0002-2487-9713"},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]},{"id":"https://openalex.org/I181653535","display_name":"San Diego Supercomputer Center","ror":"https://ror.org/04mg3nk07","country_code":"US","type":"facility","lineage":["https://openalex.org/I181653535","https://openalex.org/I36258959"]},{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]},{"id":"https://openalex.org/I4390039325","display_name":"Rutgers Cancer Institute","ror":"https://ror.org/0060x3y55","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I102322142","https://openalex.org/I4390039302","https://openalex.org/I4390039325"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stephen K. Burley","raw_affiliation_strings":["Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, Piscataway, NJ, United States","Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ, United States","Research Collaboratory for Structural Bioinformatics Protein Data Bank, Rutgers, The State University of New Jersey, Piscataway, NJ, United States","Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center, University of California San Diego, San Diego, CA, United States","Rutgers Cancer Institute of New Jersey, New Brunswick, NJ, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, Piscataway, NJ, United States","institution_ids":["https://openalex.org/I102322142"]},{"raw_affiliation_string":"Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ, United States","institution_ids":["https://openalex.org/I102322142"]},{"raw_affiliation_string":"Research Collaboratory for Structural Bioinformatics Protein Data Bank, Rutgers, The State University of New Jersey, Piscataway, NJ, United States","institution_ids":["https://openalex.org/I102322142"]},{"raw_affiliation_string":"Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center, University of California San Diego, San Diego, CA, United States","institution_ids":["https://openalex.org/I181653535","https://openalex.org/I36258959"]},{"raw_affiliation_string":"Rutgers Cancer Institute of New Jersey, New Brunswick, NJ, United States","institution_ids":["https://openalex.org/I102322142","https://openalex.org/I4390039325"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017772944","display_name":"Sebastian Bittrich","orcid":"https://orcid.org/0000-0003-3576-0387"},"institutions":[{"id":"https://openalex.org/I181653535","display_name":"San Diego Supercomputer Center","ror":"https://ror.org/04mg3nk07","country_code":"US","type":"facility","lineage":["https://openalex.org/I181653535","https://openalex.org/I36258959"]},{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sebastian Bittrich","raw_affiliation_strings":["Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center, University of California San Diego, San Diego, CA, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center, University of California San Diego, San Diego, CA, United States","institution_ids":["https://openalex.org/I181653535","https://openalex.org/I36258959"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5007270631"],"corresponding_institution_ids":["https://openalex.org/I181653535","https://openalex.org/I36258959"],"apc_list":{"value":2125,"currency":"USD","value_usd":2125},"apc_paid":{"value":2125,"currency":"USD","value_usd":2125},"fwci":1.3107,"has_fulltext":true,"cited_by_count":14,"citation_normalized_percentile":{"value":0.7993087,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"3","issue":null,"first_page":"1311287","last_page":"1311287"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12104","display_name":"Protein Tyrosine Phosphatases","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12104","display_name":"Protein Tyrosine Phosphatases","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.9627090692520142},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank","score":0.8784559965133667},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5050855278968811},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4103337228298187},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.3841366469860077},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21253320574760437},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.11594492197036743}],"concepts":[{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.9627090692520142},{"id":"https://openalex.org/C119145174","wikidata":"https://www.wikidata.org/wiki/Q7251429","display_name":"Protein Data Bank","level":3,"score":0.8784559965133667},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5050855278968811},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4103337228298187},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.3841366469860077},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21253320574760437},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.11594492197036743}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.3389/fbinf.2023.1311287","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2023.1311287","pdf_url":"https://www.frontiersin.org/articles/10.3389/fbinf.2023.1311287/pdf?isPublishedV2=False","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38111685","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38111685","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10726007","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10726007","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10726007/pdf/fbinf-03-1311287.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Front Bioinform","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:996e6411879c41209af17a862968a3cb","is_oa":true,"landing_page_url":"https://doaj.org/article/996e6411879c41209af17a862968a3cb","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Bioinformatics, Vol 3 (2023)","raw_type":"article"},{"id":"pmh:oai:osti.gov:2472803","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/2472803","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"doi:10.3389/fbinf.2023.1311287","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2023.1311287","pdf_url":"https://www.frontiersin.org/articles/10.3389/fbinf.2023.1311287/pdf?isPublishedV2=False","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1181207698","display_name":null,"funder_award_id":"P41 GM109824","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G2687614564","display_name":null,"funder_award_id":"R01 GM083960","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G6474250024","display_name":null,"funder_award_id":"R01 GM133198","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G6889032373","display_name":null,"funder_award_id":"BB/W017970/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4389309199.pdf"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W1488372279","https://openalex.org/W1972463841","https://openalex.org/W1976911630","https://openalex.org/W2024706106","https://openalex.org/W2063623087","https://openalex.org/W2082448876","https://openalex.org/W2128484254","https://openalex.org/W2131693592","https://openalex.org/W2200310838","https://openalex.org/W2317996983","https://openalex.org/W2770485188","https://openalex.org/W2898364362","https://openalex.org/W2900674118","https://openalex.org/W2950954328","https://openalex.org/W2984761660","https://openalex.org/W3036690471","https://openalex.org/W3095583226","https://openalex.org/W3098935468","https://openalex.org/W3106745904","https://openalex.org/W3114734220","https://openalex.org/W3177828909","https://openalex.org/W3186179742","https://openalex.org/W3198282581","https://openalex.org/W3202105508","https://openalex.org/W3211795435","https://openalex.org/W3215918380","https://openalex.org/W4252672146","https://openalex.org/W4280543136","https://openalex.org/W4309506674","https://openalex.org/W4309908854","https://openalex.org/W4310058955","https://openalex.org/W4313340197","https://openalex.org/W4318978985","https://openalex.org/W4327550249","https://openalex.org/W4367052125","https://openalex.org/W4386709418"],"related_works":["https://openalex.org/W3126783617","https://openalex.org/W2732388178","https://openalex.org/W3093468851","https://openalex.org/W4353055924","https://openalex.org/W2806488847","https://openalex.org/W2121688928","https://openalex.org/W2772651271","https://openalex.org/W4388749535","https://openalex.org/W4361279638","https://openalex.org/W2155159626"],"abstract_inverted_index":{".,":[0],"AlphaFold,":[1],"RosettaFold,":[2],"and":[3,35,75,89,94,116,132,158],"ESMFold)":[4],"enable":[5],"prediction":[6],"of":[7,38,57,79,103,106,129,140,160,164],"three-dimensional":[8],"(3D)":[9],"protein":[10,104],"structures":[11,31,105],"from":[12,110],"amino":[13],"acid":[14],"sequences":[15,131],"alone":[16],"at":[17],"accuracies":[18],"comparable":[19],"to":[20,29,71,86],"lower-resolution":[21],"experimental":[22,108],"methods.":[23],"These":[24],"tools":[25,70,141],"have":[26],"been":[27],"employed":[28],"predict":[30],"across":[32],"entire":[33],"proteomes":[34],"the":[36,54,84,111,144],"results":[37],"large-scale":[39],"metagenomic":[40],"sequence":[41],"studies,":[42],"yielding":[43],"an":[44,65],"exponential":[45],"increase":[46],"in":[47],"available":[48],"biomolecular":[49],"3D":[50,165],"structural":[51,95,133],"information.":[52],"Given":[53],"enormous":[55],"volume":[56],"this":[58,161],"newly":[59],"computed":[60],"biostructure":[61],"data,":[62],"there":[63],"is":[64,83],"urgent":[66],"need":[67],"for":[68,153],"robust":[69],"manage,":[72],"search,":[73,156],"cluster,":[74],"visualize":[76,90],"large":[77],"collections":[78],"structures.":[80],"Equally":[81],"important":[82],"capability":[85],"efficiently":[87],"summarize":[88],"metadata,":[91],"biological/biochemical":[92],"annotations,":[93],"features,":[96],"particularly":[97],"when":[98],"working":[99],"with":[100],"vast":[101],"numbers":[102],"both":[107],"origin":[109],"Protein":[112],"Data":[113],"Bank":[114],"(PDB)":[115],"computationally-predicted":[117],"models.":[118],"Moreover,":[119],"researchers":[120],"require":[121],"advanced":[122],"visualization":[123,159],"techniques":[124],"that":[125],"support":[126],"interactive":[127],"exploration":[128],"multiple":[130],"alignments.":[134],"This":[135],"paper":[136],"introduces":[137],"a":[138],"suite":[139],"provided":[142],"on":[143],"RCSB":[145],"PDB":[146],"research-focused":[147],"web":[148],"portal":[149],"RCSB.":[150],"org,":[151],"tailor-made":[152],"efficient":[154],"management,":[155],"organization,":[157],"burgeoning":[162],"corpus":[163],"macromolecular":[166],"structure":[167],"data.":[168]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":1}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
