{"id":"https://openalex.org/W4388945356","doi":"https://doi.org/10.3389/fbinf.2023.1304099","title":"The promises of large language models for protein design and modeling","display_name":"The promises of large language models for protein design and modeling","publication_year":2023,"publication_date":"2023-11-23","ids":{"openalex":"https://openalex.org/W4388945356","doi":"https://doi.org/10.3389/fbinf.2023.1304099","pmid":"https://pubmed.ncbi.nlm.nih.gov/38076030"},"language":"en","primary_location":{"id":"doi:10.3389/fbinf.2023.1304099","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2023.1304099","pdf_url":"https://www.frontiersin.org/articles/10.3389/fbinf.2023.1304099/pdf?isPublishedV2=False","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.frontiersin.org/articles/10.3389/fbinf.2023.1304099/pdf?isPublishedV2=False","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071444502","display_name":"Giorgio Valentini","orcid":"https://orcid.org/0000-0002-5694-3919"},"institutions":[{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Giorgio Valentini","raw_affiliation_strings":["AnacletoLab, Dipartimento di Informatica, Universit\u00e0 degli Studi di Milano, Milan, Italy","ELLIS, European Laboratory for Learning and Intelligent Systems, Milan, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AnacletoLab, Dipartimento di Informatica, Universit\u00e0 degli Studi di Milano, Milan, Italy","institution_ids":["https://openalex.org/I189158943"]},{"raw_affiliation_string":"ELLIS, European Laboratory for Learning and Intelligent Systems, Milan, Italy","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005837237","display_name":"Dario Malchiodi","orcid":"https://orcid.org/0000-0002-7574-697X"},"institutions":[{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Dario Malchiodi","raw_affiliation_strings":["AnacletoLab, Dipartimento di Informatica, Universit\u00e0 degli Studi di Milano, Milan, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AnacletoLab, Dipartimento di Informatica, Universit\u00e0 degli Studi di Milano, Milan, Italy","institution_ids":["https://openalex.org/I189158943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056406146","display_name":"Jessica Gliozzo","orcid":"https://orcid.org/0000-0001-7629-8112"},"institutions":[{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]},{"id":"https://openalex.org/I4210118689","display_name":"Joint Research Centre","ror":"https://ror.org/02qezmz13","country_code":"IT","type":"government","lineage":["https://openalex.org/I1320481043","https://openalex.org/I2800387288","https://openalex.org/I4210118689","https://openalex.org/I4210161702"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Jessica Gliozzo","raw_affiliation_strings":["AnacletoLab, Dipartimento di Informatica, Universit\u00e0 degli Studi di Milano, Milan, Italy","European Commission, Joint Research Centre (JRC), Ispra, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AnacletoLab, Dipartimento di Informatica, Universit\u00e0 degli Studi di Milano, Milan, Italy","institution_ids":["https://openalex.org/I189158943"]},{"raw_affiliation_string":"European Commission, Joint Research Centre (JRC), Ispra, Italy","institution_ids":["https://openalex.org/I4210118689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089929382","display_name":"Marco Mesiti","orcid":"https://orcid.org/0000-0001-5701-0080"},"institutions":[{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marco Mesiti","raw_affiliation_strings":["AnacletoLab, Dipartimento di Informatica, Universit\u00e0 degli Studi di Milano, Milan, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AnacletoLab, Dipartimento di Informatica, Universit\u00e0 degli Studi di Milano, Milan, Italy","institution_ids":["https://openalex.org/I189158943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044649325","display_name":"Mauricio Soto","orcid":"https://orcid.org/0000-0001-5977-9467"},"institutions":[{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Mauricio Soto-Gomez","raw_affiliation_strings":["AnacletoLab, Dipartimento di Informatica, Universit\u00e0 degli Studi di Milano, Milan, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AnacletoLab, Dipartimento di Informatica, Universit\u00e0 degli Studi di Milano, Milan, Italy","institution_ids":["https://openalex.org/I189158943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090218127","display_name":"Alberto Cabri","orcid":"https://orcid.org/0000-0003-1373-8402"},"institutions":[{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Alberto Cabri","raw_affiliation_strings":["AnacletoLab, Dipartimento di Informatica, Universit\u00e0 degli Studi di Milano, Milan, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AnacletoLab, Dipartimento di Informatica, Universit\u00e0 degli Studi di Milano, Milan, Italy","institution_ids":["https://openalex.org/I189158943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073533486","display_name":"Justin Reese","orcid":"https://orcid.org/0000-0002-2170-2250"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Justin Reese","raw_affiliation_strings":["Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079939753","display_name":"Elena Casiraghi","orcid":"https://orcid.org/0000-0003-2024-7572"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]}],"countries":["IT","US"],"is_corresponding":false,"raw_author_name":"Elena Casiraghi","raw_affiliation_strings":["AnacletoLab, Dipartimento di Informatica, Universit\u00e0 degli Studi di Milano, Milan, Italy","ELLIS, European Laboratory for Learning and Intelligent Systems, Milan, Italy","Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AnacletoLab, Dipartimento di Informatica, Universit\u00e0 degli Studi di Milano, Milan, Italy","institution_ids":["https://openalex.org/I189158943"]},{"raw_affiliation_string":"ELLIS, European Laboratory for Learning and Intelligent Systems, Milan, Italy","institution_ids":[]},{"raw_affiliation_string":"Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5033225381","display_name":"Peter N. Robinson","orcid":"https://orcid.org/0000-0002-0736-9199"},"institutions":[{"id":"https://openalex.org/I4210115256","display_name":"Jackson Laboratory","ror":"https://ror.org/021sy4w91","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peter N. Robinson","raw_affiliation_strings":["Jackson Lab for Genomic Medicine, Farmington, CT, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jackson Lab for Genomic Medicine, Farmington, CT, United States","institution_ids":["https://openalex.org/I4210115256"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5071444502"],"corresponding_institution_ids":["https://openalex.org/I189158943"],"apc_list":{"value":1900,"currency":"USD","value_usd":1900},"apc_paid":{"value":1900,"currency":"USD","value_usd":1900},"fwci":5.4185,"has_fulltext":true,"cited_by_count":33,"citation_normalized_percentile":{"value":0.96669521,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":100},"biblio":{"volume":"3","issue":null,"first_page":"1304099","last_page":"1304099"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9907000064849854,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5669186115264893},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5530369281768799},{"id":"https://openalex.org/keywords/adaptation","display_name":"Adaptation (eye)","score":0.5396011471748352},{"id":"https://openalex.org/keywords/perspective","display_name":"Perspective (graphical)","score":0.4583756923675537},{"id":"https://openalex.org/keywords/natural-language","display_name":"Natural language","score":0.44221022725105286},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.32444316148757935},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.2713049054145813},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2503437399864197},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.1593199372291565},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.10449013113975525},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.06796517968177795}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5669186115264893},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5530369281768799},{"id":"https://openalex.org/C139807058","wikidata":"https://www.wikidata.org/wiki/Q352374","display_name":"Adaptation (eye)","level":2,"score":0.5396011471748352},{"id":"https://openalex.org/C12713177","wikidata":"https://www.wikidata.org/wiki/Q1900281","display_name":"Perspective (graphical)","level":2,"score":0.4583756923675537},{"id":"https://openalex.org/C195324797","wikidata":"https://www.wikidata.org/wiki/Q33742","display_name":"Natural language","level":2,"score":0.44221022725105286},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.32444316148757935},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.2713049054145813},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2503437399864197},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.1593199372291565},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.10449013113975525},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.06796517968177795},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.3389/fbinf.2023.1304099","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2023.1304099","pdf_url":"https://www.frontiersin.org/articles/10.3389/fbinf.2023.1304099/pdf?isPublishedV2=False","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38076030","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38076030","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in bioinformatics","raw_type":null},{"id":"pmh:oai:air.unimi.it:2434/1018572","is_oa":true,"landing_page_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2023.1304099/full","pdf_url":"https://public-pages-files-2025.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2023.1304099/pdf","source":{"id":"https://openalex.org/S4306400516","display_name":"Archivio Istituzionale della Ricerca (Universita Degli Studi Di Milano)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I189158943","host_organization_name":"University of Milan","host_organization_lineage":["https://openalex.org/I189158943"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:mouseion.jax.org:stfb2023-1301","is_oa":true,"landing_page_url":"https://mouseion.jax.org/stfb2023/313","pdf_url":"https://mouseion.jax.org/cgi/viewcontent.cgi?article=1301&context=stfb2023","source":{"id":"https://openalex.org/S4377196421","display_name":"The Mouseion at the JAXlibrary (Jackson Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210115256","host_organization_name":"Jackson Laboratory","host_organization_lineage":["https://openalex.org/I4210115256"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty Research 2023","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:10701588","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10701588","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10701588/pdf/fbinf-03-1304099.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Front Bioinform","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:ed73130681584108962657b68230b70f","is_oa":true,"landing_page_url":"https://doaj.org/article/ed73130681584108962657b68230b70f","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Bioinformatics, Vol 3 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3389/fbinf.2023.1304099","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2023.1304099","pdf_url":"https://www.frontiersin.org/articles/10.3389/fbinf.2023.1304099/pdf?isPublishedV2=False","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.8299999833106995}],"awards":[{"id":"https://openalex.org/G1286236842","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G1286251239","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320337480","funder_display_name":"Basic Energy Sciences"},{"id":"https://openalex.org/G2776628454","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320337480","funder_display_name":"Basic Energy Sciences"},{"id":"https://openalex.org/G3083819904","display_name":null,"funder_award_id":"05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G3944918260","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G4501827968","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G4565140552","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G498139845","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G5123489780","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320337480","funder_display_name":"Basic Energy Sciences"},{"id":"https://openalex.org/G6348972864","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6558272803","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8431251193","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320337480","funder_display_name":"Basic Energy Sciences"},{"id":"https://openalex.org/G969889393","display_name":null,"funder_award_id":"DE-AC02-","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"},{"id":"https://openalex.org/F4320337480","display_name":"Basic Energy Sciences","ror":"https://ror.org/05mg91w61"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4388945356.pdf"},"referenced_works_count":74,"referenced_works":["https://openalex.org/W1593271688","https://openalex.org/W1614298861","https://openalex.org/W1972624882","https://openalex.org/W1975147762","https://openalex.org/W2102122585","https://openalex.org/W2117130368","https://openalex.org/W2180877453","https://openalex.org/W2282821441","https://openalex.org/W2788403449","https://openalex.org/W2889498145","https://openalex.org/W2912083425","https://openalex.org/W2913668833","https://openalex.org/W2913954081","https://openalex.org/W2945976633","https://openalex.org/W2950784811","https://openalex.org/W2962862931","https://openalex.org/W2971227267","https://openalex.org/W2973049837","https://openalex.org/W2978017171","https://openalex.org/W2998704965","https://openalex.org/W2999840604","https://openalex.org/W3007007518","https://openalex.org/W3010145447","https://openalex.org/W3034917890","https://openalex.org/W3038035611","https://openalex.org/W3119872582","https://openalex.org/W3123901912","https://openalex.org/W3133652505","https://openalex.org/W3133702157","https://openalex.org/W3144701084","https://openalex.org/W3146944767","https://openalex.org/W3154507271","https://openalex.org/W3177500196","https://openalex.org/W3177828909","https://openalex.org/W3178901009","https://openalex.org/W3187467055","https://openalex.org/W3195577433","https://openalex.org/W4200048988","https://openalex.org/W4200079908","https://openalex.org/W4205773061","https://openalex.org/W4220991280","https://openalex.org/W4225080234","https://openalex.org/W4283390570","https://openalex.org/W4285175926","https://openalex.org/W4288066876","https://openalex.org/W4291023040","https://openalex.org/W4292779060","https://openalex.org/W4297243351","https://openalex.org/W4309506674","https://openalex.org/W4310498446","https://openalex.org/W4317868880","https://openalex.org/W4318071656","https://openalex.org/W4327810158","https://openalex.org/W4328049044","https://openalex.org/W4365143687","https://openalex.org/W4366552064","https://openalex.org/W4366823175","https://openalex.org/W4385255463","https://openalex.org/W4386555177","https://openalex.org/W4388020856","https://openalex.org/W6628124331","https://openalex.org/W6636510571","https://openalex.org/W6678414869","https://openalex.org/W6679434410","https://openalex.org/W6680532216","https://openalex.org/W6737947904","https://openalex.org/W6739901393","https://openalex.org/W6745740294","https://openalex.org/W6755207826","https://openalex.org/W6763868836","https://openalex.org/W6778883912","https://openalex.org/W6791955017","https://openalex.org/W6794404659","https://openalex.org/W6800751262"],"related_works":["https://openalex.org/W2149537132","https://openalex.org/W1670566515","https://openalex.org/W641279757","https://openalex.org/W370975646","https://openalex.org/W596972243","https://openalex.org/W4242022592","https://openalex.org/W2997567050","https://openalex.org/W2018871932","https://openalex.org/W69751022","https://openalex.org/W2377797706"],"abstract_inverted_index":{"The":[0],"recent":[1],"breakthroughs":[2],"of":[3,11,35,42,53,74],"Large":[4],"Language":[5],"Models":[6],"(LLMs)":[7],"in":[8,22,60],"the":[9,17,26,33,38,50,72,102,105],"context":[10],"natural":[12,30],"language":[13,31,73,78],"processing":[14],"have":[15,80],"opened":[16],"way":[18],"to":[19,44,84],"significant":[20],"advances":[21],"protein":[23,45,77,87,126],"research.":[24],"Indeed,":[25,76],"relationships":[27],"between":[28],"human":[29,65],"and":[32,40,47,55,63,104,112,116,128],"\"language":[34],"proteins\"":[36],"invite":[37],"application":[39],"adaptation":[41],"LLMs":[43,59,123],"modelling":[46],"design.":[48,129],"Considering":[49],"impressive":[51],"results":[52,70],"GPT-4":[54],"other":[56],"recently":[57],"developed":[58],"processing,":[61],"generating":[62],"translating":[64],"languages,":[66],"we":[67,100,117],"anticipate":[68],"analogous":[69],"with":[71],"proteins.":[75],"models":[79],"been":[81],"already":[82],"trained":[83],"accurately":[85],"predict":[86],"properties,":[88],"generate":[89],"novel":[90,111],"functionally":[91],"characterized":[92],"proteins,":[93],"achieving":[94],"state-of-the-art":[95],"results.":[96],"In":[97],"this":[98,110],"paper":[99],"discuss":[101],"promises":[103],"open":[106],"challenges":[107],"raised":[108],"by":[109],"exciting":[113],"research":[114],"area,":[115],"propose":[118],"our":[119],"perspective":[120],"on":[121],"how":[122],"will":[124],"affect":[125],"modeling":[127]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":21},{"year":2024,"cited_by_count":11}],"updated_date":"2026-06-04T09:04:59.091469","created_date":"2025-10-10T00:00:00"}
